/** @see Moh731CohortLibrary#revisitsArt() */
@Test
public void revisitsArt() throws Exception {
EncounterType hivConsult =
MetadataUtils.getEncounterType(HivMetadata._EncounterType.HIV_CONSULTATION);
Concept stavudine = Context.getConceptService().getConcept(84309);
// Start patient #6 this month and give them a visit in the reporting period + 2 months
TestUtils.saveDrugOrder(TestUtils.getPatient(6), stavudine, TestUtils.date(2012, 6, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(6), hivConsult, TestUtils.date(2012, 6, 20));
// Start patient #7 in previous month and give them a visit in the reporting period + 2 months
TestUtils.saveDrugOrder(TestUtils.getPatient(7), stavudine, TestUtils.date(2012, 5, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(7), hivConsult, TestUtils.date(2012, 6, 20));
// Start patient #8 and give them visit outside of reporting period + 2 month window
TestUtils.saveDrugOrder(TestUtils.getPatient(8), stavudine, TestUtils.date(2012, 1, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(8), hivConsult, TestUtils.date(2012, 1, 20));
CohortDefinition cd = moh731Cohorts.revisitsArt();
context.addParameterValue("fromDate", PERIOD_START);
context.addParameterValue("toDate", PERIOD_END);
EvaluatedCohort evaluated =
Context.getService(CohortDefinitionService.class).evaluate(cd, context);
ReportingTestUtils.assertCohortEquals(Arrays.asList(7), evaluated);
}
/** @see Moh731CohortLibrary#currentlyInCare() */
@Test
public void currentlyInCare() throws Exception {
EncounterType triage = MetadataUtils.getEncounterType(CommonMetadata._EncounterType.TRIAGE);
EncounterType hivConsult =
MetadataUtils.getEncounterType(HivMetadata._EncounterType.HIV_CONSULTATION);
// Give patient #2 irrelevant encounter during 90 day window
TestUtils.saveEncounter(TestUtils.getPatient(2), triage, TestUtils.date(2012, 6, 15));
// Give patient #6 relevant encounter before and after 90 day window
TestUtils.saveEncounter(TestUtils.getPatient(6), hivConsult, TestUtils.date(2012, 3, 31));
TestUtils.saveEncounter(TestUtils.getPatient(6), hivConsult, TestUtils.date(2012, 7, 1));
// Give patient #7 relevant encounter at start of 90 day window
TestUtils.saveEncounter(TestUtils.getPatient(7), hivConsult, TestUtils.date(2012, 4, 1));
// Give patient #8 relevant encounter at end of 90 day window
TestUtils.saveEncounter(TestUtils.getPatient(8), hivConsult, TestUtils.date(2012, 6, 30));
CohortDefinition cd = moh731Cohorts.currentlyInCare();
context.addParameterValue("onDate", PERIOD_END);
EvaluatedCohort evaluated =
Context.getService(CohortDefinitionService.class).evaluate(cd, context);
ReportingTestUtils.assertCohortEquals(Arrays.asList(7, 8), evaluated);
}
@RequestMapping(method = RequestMethod.POST)
public void process(
final @RequestParam(required = false, value = "cohort") Integer cohortId,
final @RequestParam(required = true, value = "template") MultipartFile template,
final HttpServletResponse response)
throws IOException, EvaluationException {
EvaluationContext context = new EvaluationContext();
context.addParameterValue("currentDate", new Date());
if (cohortId != null) {
context.setBaseCohort(Context.getCohortService().getCohort(cohortId));
}
PatientDataSetDefinition definition = new PatientDataSetDefinition();
definition.addColumn(
"id", new PatientIdDataDefinition(), StringUtils.EMPTY, new ObjectFormatter());
ListConverter listConverter = new ListConverter();
listConverter.setMaxNumberOfItems(1);
PatientIdentifierDataDefinition preferredIdentifier = new PatientIdentifierDataDefinition();
preferredIdentifier.addType(Context.getPatientService().getPatientIdentifierType(1));
definition.addColumn("identifier", preferredIdentifier, StringUtils.EMPTY, listConverter);
definition.addColumn(
"name",
new PreferredNameDataDefinition(),
StringUtils.EMPTY,
new ObjectFormatter("{familyName}, {givenName}"));
AgeDataDefinition ageOnDate = new AgeDataDefinition();
ageOnDate.addParameter(new Parameter("effectiveDate", "effective date", Date.class));
definition.addColumn("age", ageOnDate, "effectiveDate=${currentDate}", new AgeConverter());
definition.addColumn(
"birthdate",
new BirthdateDataDefinition(),
StringUtils.EMPTY,
new BirthdateConverter("dd-MMM-yyyy"));
definition.addColumn(
"gender", new GenderDataDefinition(), StringUtils.EMPTY, new ObjectFormatter());
ReportDefinition reportDefinition = new ReportDefinition();
reportDefinition.setName("Test Report");
reportDefinition.addDataSetDefinition("PatientDataSetDefinition", definition, null);
final ReportDesign design = new ReportDesign();
design.setName("Test Report Design With Excel Template Renderer");
design.setReportDefinition(reportDefinition);
design.setRendererType(ExcelTemplateRenderer.class);
Properties properties = new Properties();
properties.put("repeatingSections", "sheet:1,dataset:PatientDataSetDefinition");
design.setProperties(properties);
ReportDesignResource resource = new ReportDesignResource();
resource.setName("excel-template.xls");
InputStream inputStream = template.getInputStream();
resource.setContents(IOUtils.toByteArray(inputStream));
IOUtils.closeQuietly(inputStream);
design.addResource(resource);
ExcelTemplateRenderer renderer =
new ExcelTemplateRenderer() {
public ReportDesign getDesign(String argument) {
return design;
}
};
ReportDefinitionService rs = Context.getService(ReportDefinitionService.class);
ReportData data = rs.evaluate(reportDefinition, context);
CsvReportRenderer csvReportRenderer = new CsvReportRenderer();
csvReportRenderer.render(data, "output:csv", System.out);
File file = File.createTempFile("excel", "summary");
BufferedOutputStream bufferedOutputStream =
new BufferedOutputStream(new FileOutputStream(file));
renderer.render(data, "output:xls", bufferedOutputStream);
bufferedOutputStream.close();
response.setHeader("Content-Disposition", "attachment; filename=patient-summary.xls");
response.setContentType("application/vnd.ms-excel");
response.setContentLength((int) file.length());
FileCopyUtils.copy(new FileInputStream(file), response.getOutputStream());
if (file.delete()) log.info("Temporary file deleted!");
}