/**
  * Removes the ROI figure.
  *
  * @param figure The figure to remove.
  */
 void removeROIFigure(ROIFigure figure) {
   if (figure == null) return;
   FigureTableModel tm = (FigureTableModel) fieldTable.getModel();
   ROIFigure value = tm.getFigure();
   if (value == null) return;
   if (value.getROI().getID() == figure.getROI().getID()) tm.clearData();
 }
 /**
  * Add stats in the column for area figures.
  *
  * @param fig the figure where the stats come from.
  * @param data the data being populated.
  * @param count the column in the table being populated.
  */
 private void addValuesForAreaFigure(ROIFigure fig, Double data[][], int channel, int count) {
   data[count][6] = AnnotationKeys.AREA.get(fig.getROIShape());
   data[count][7] = fig.getBounds().getX();
   data[count][8] = fig.getBounds().getY();
   data[count][9] = AnnotationKeys.WIDTH.get(fig.getROIShape());
   data[count][10] = AnnotationKeys.HEIGHT.get(fig.getROIShape());
   data[count][11] = AnnotationKeys.CENTREX.get(fig.getROIShape());
   data[count][12] = AnnotationKeys.CENTREY.get(fig.getROIShape());
 }
 /**
  * Removes the ROI figures.
  *
  * @param figures The figures to remove.
  */
 void removeROIFigures(List<ROIFigure> figures) {
   if (figures == null || figures.size() == 0) return;
   FigureTableModel tm = (FigureTableModel) fieldTable.getModel();
   ROIFigure value = tm.getFigure();
   if (value == null) return;
   Iterator<ROIFigure> i = figures.iterator();
   ROIFigure figure;
   while (i.hasNext()) {
     figure = i.next();
     if (value.getROI().getID() == figure.getROI().getID()) tm.clearData();
   }
   fieldTable.repaint();
 }
  private void handleValueChanged(String text) {
    int row = fieldTable.getEditingRow();

    if (row < 0 || row >= attributeFields.size()) {
      return;
    }

    AttributeKey attr = getAttributeKey(row);

    FigureTableModel ftm = (FigureTableModel) fieldTable.getModel();
    ROIFigure figure = ftm.getFigure();

    if (attr.equals(MeasurementAttributes.TEXT)) {
      if (TextHolderFigure.class.isAssignableFrom(figure.getClass())) {
        ((TextHolderFigure) figure).setText(text);
      }
    } else if (attr.equals(MeasurementAttributes.FONT_SIZE)) {
      double d = parseDouble(text);
      figure.setAttribute(MeasurementAttributes.FONT_SIZE, d);
      figure.changed();
    } else if (attr.equals(MeasurementAttributes.STROKE_WIDTH)) {
      double d = parseDouble(text);
      figure.setAttribute(MeasurementAttributes.STROKE_WIDTH, d);
    } else if (attr.equals(MeasurementAttributes.WIDTH)) {
      try {
        double d = parseDouble(text);
        setFigureDimension(figure, MeasurementAttributes.WIDTH, d);
        if (isScaleProportionally()) {
          setFigureDimension(figure, MeasurementAttributes.HEIGHT, d);
        }
      } catch (Exception e) {
      }
    } else if (attr.equals(MeasurementAttributes.HEIGHT)) {
      try {
        double d = parseDouble(text);
        setFigureDimension(figure, MeasurementAttributes.HEIGHT, d);
        if (isScaleProportionally()) {
          setFigureDimension(figure, MeasurementAttributes.WIDTH, d);
        }
      } catch (Exception e) {
      }
    }
    model.getDrawingView().repaint();
  }
 private void setFigureDimension(ROIFigure figure, AttributeKey key, double dimension) {
   if (figure instanceof MeasureEllipseFigure
       || figure instanceof MeasureRectangleFigure
       || figure instanceof MeasureBezierFigure
       || figure instanceof MeasureTextFigure
       || figure instanceof MeasureLineConnectionFigure
       || figure instanceof MeasureLineFigure) {
     figure.setAttribute(key, dimension);
   }
 }
 /**
  * Populate the data for use in the summary table for the figure fig, and for channel.
  *
  * @param fig see above.
  * @param data see above.
  * @param channel see above.
  * @param count the column the data is being placed in.
  */
 private void populateSummaryColumn(ROIFigure fig, Double data[][], int channel, int count) {
   data[count][0] = channelMin.get(channel);
   data[count][1] = channelMax.get(channel);
   data[count][2] = channelSum.get(channel);
   data[count][3] = channelMean.get(channel);
   data[count][4] = channelStdDev.get(channel);
   data[count][5] = (double) fig.getPoints().size();
   if (areaFigure(fig)) addValuesForAreaFigure(fig, data, channel, count);
   else if (lineFigure(fig)) addValuesForLineFigure(fig, data, channel, count);
   else if (pointFigure(fig)) addValuesForPointFigure(fig, data, channel, count);
 }
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  /**
   * Selects the collection of figures.
   *
   * @param l The collection of objects to select.
   * @param clear Pass <code>true</code> to clear the selection <code>false</code> otherwise.
   */
  void setSelectedFigures(List<ROIShape> l, boolean clear) {
    Iterator<ROIShape> i = l.iterator();
    TreeSelectionModel tsm = objectsTable.getTreeSelectionModel();
    ROIFigure figure = null;
    ROIShape shape;
    if (clear) tsm.clearSelection();
    objectsTable.removeTreeSelectionListener(treeSelectionListener);

    try {
      while (i.hasNext()) {
        shape = i.next();
        figure = shape.getFigure();
        objectsTable.selectROIShape(figure.getROIShape());
      }
      objectsTable.repaint();
      if (figure != null) objectsTable.scrollToROIShape(figure.getROIShape());
    } catch (Exception e) {
      MeasurementAgent.getRegistry().getLogger().info(this, "Figure selection " + e);
    }

    objectsTable.addTreeSelectionListener(treeSelectionListener);
  }
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 /**
  * Removes the passed figure from the table.
  *
  * @param figure The figure to remove.
  */
 void removeFigure(ROIFigure figure) {
   if (figure == null) return;
   objectsTable.removeROIShape(figure.getROIShape());
   objectsTable.repaint();
 }