/**
* Checks if our WPS can really handle this process inputs and outputs
*
* @param pf
* @param name
* @return
*/
Set<Name> getProcessBlacklist() {
synchronized (PROCESS_BLACKLIST) {
if (PROCESS_BLACKLIST == Collections.EMPTY_SET) {
Set<Name> blacklist = new HashSet<Name>();
for (ProcessFactory pf : Processors.getProcessFactories()) {
int count = 0;
for (Name name : pf.getNames()) {
try {
// check inputs
for (Parameter<?> p : pf.getParameterInfo(name).values()) {
List<ProcessParameterIO> ppios = ProcessParameterIO.findAll(p, context);
if (ppios.isEmpty()) {
LOGGER.log(
Level.INFO,
"Blacklisting process "
+ name.getURI()
+ " as the input "
+ p.key
+ " of type "
+ p.type
+ " cannot be handled");
blacklist.add(name);
}
}
// check outputs
for (Parameter<?> p : pf.getResultInfo(name, null).values()) {
List<ProcessParameterIO> ppios = ProcessParameterIO.findAll(p, context);
if (ppios.isEmpty()) {
LOGGER.log(
Level.INFO,
"Blacklisting process "
+ name.getURI()
+ " as the output "
+ p.key
+ " of type "
+ p.type
+ " cannot be handled");
blacklist.add(name);
}
}
} catch (Throwable t) {
blacklist.add(name);
}
if (!blacklist.contains(name)) {
count++;
}
}
LOGGER.info("Found " + count + " bindable processes in " + pf.getTitle());
}
PROCESS_BLACKLIST = blacklist;
}
}
return PROCESS_BLACKLIST;
}
public Function function(Name processName, List<Expression> args, Literal fallback) {
// if the param function just return it
if (processName.equals(new NameImpl(ParameterFunction.NAME))) {
return new ParameterFunction(fallback, args);
}
// lookup the process
if (functionNames == null) {
init();
}
if (!processToFunction.containsKey(processName)) {
// no such function
return null;
} else {
// wrap the process
org.geotools.process.Process process = Processors.createProcess(processName);
Map<String, Parameter<?>> parameters = Processors.getParameterInfo(processName);
if (process instanceof RenderingProcess) {
return new RenderingProcessFunction(
processName.getLocalPart(),
processName,
args,
parameters,
(RenderingProcess) process,
fallback);
} else {
return new ProcessFunction(
processName.getLocalPart(), processName, args, parameters, process, fallback);
}
}
}
public Element AbstractFeatureTypeEncode(
Object object, Document document, Element value, XSDIdRegistry idSet) {
Feature feature = (Feature) object;
String id = feature.getIdentifier().getID();
Name typeName;
if (feature.getDescriptor() == null) {
// no descriptor, assume WFS feature type name is the same as the name of the content
// model type
typeName = feature.getType().getName();
} else {
// honour the name set in the descriptor
typeName = feature.getDescriptor().getName();
}
Element encoding =
document.createElementNS(typeName.getNamespaceURI(), typeName.getLocalPart());
if (!(feature instanceof SimpleFeature) && idSet != null) {
if (idSet.idExists(id)) {
// XSD type ids can only appear once in the same document, otherwise the document is
// not schema valid. Attributes of the same ids should be encoded as xlink:href to
// the existing attribute.
encoding.setAttributeNS(XLINK.NAMESPACE, XLINK.HREF.getLocalPart(), "#" + id.toString());
// make sure the attributes aren't encoded
feature.setValue(Collections.emptyList());
return encoding;
} else {
idSet.add(id);
}
}
encoding.setAttributeNS(gml.getNamespaceURI(), "id", id);
encodeClientProperties(feature, value);
return encoding;
}
public boolean delete(GeogigTransaction transaction, Feature f) throws Exception {
final WorkingTree workTree =
(transaction != null ? transaction.workingTree() : repo.workingTree());
Name name = f.getType().getName();
String localPart = name.getLocalPart();
String id = f.getIdentifier().getID();
boolean existed = workTree.delete(localPart, id);
return existed;
}
/** Inserts the feature to the index but does not stages it to be committed */
public ObjectId insert(GeogigTransaction transaction, Feature f) throws Exception {
final WorkingTree workTree =
(transaction != null ? transaction.workingTree() : repo.workingTree());
Name name = f.getType().getName();
String parentPath = name.getLocalPart();
Node ref = workTree.insert(parentPath, f);
ObjectId objectId = ref.getObjectId();
return objectId;
}
@Test
public void testNoValid2DVariable() throws Exception {
final File file = TestData.file(this, "noVars.nc");
NetcdfDataset dataset = NetcdfDataset.acquireDataset(file.getAbsolutePath(), null);
List<Variable> variables = dataset.getVariables();
boolean speedVariableIsPresent = false;
String speedVariableName = "";
for (Variable variable : variables) {
if (variable.getShortName().equals("spd")) {
speedVariableIsPresent = true;
speedVariableName = variable.getFullName();
break;
}
}
assertTrue(speedVariableIsPresent);
final NetCDFImageReaderSpi unidataImageReaderSpi = new NetCDFImageReaderSpi();
assertTrue(unidataImageReaderSpi.canDecodeInput(file));
NetCDFImageReader reader = null;
try {
// sample dataset containing a water_speed variable having
// only time, depth dimensions. No lon/lat dims are present
// resulting into variable not usable.
reader = (NetCDFImageReader) unidataImageReaderSpi.createReaderInstance();
reader.setInput(file);
final List<Name> names = reader.getCoveragesNames();
boolean isSpeedCoverageAvailable = false;
for (Name name : names) {
if (name.toString().equals(speedVariableName)) {
isSpeedCoverageAvailable = true;
break;
}
}
// Checking that only "mask" variable is found
assertFalse(isSpeedCoverageAvailable);
} finally {
if (dataset != null) {
dataset.close();
}
if (reader != null) {
try {
reader.dispose();
} catch (Throwable t) {
// Does nothing
}
}
}
}
/**
* Encode any client properties (XML attributes) found in the UserData map of a ComplexAttribute
* as XML attributes of the element.
*
* @param complex the ComplexAttribute to search for client properties
* @param element the element to which XML attributes should be added
*/
@SuppressWarnings("unchecked")
public static void encodeClientProperties(Property complex, Element element) {
Map<Name, Object> clientProperties =
(Map<Name, Object>) complex.getUserData().get(Attributes.class);
if (clientProperties != null) {
for (Name name : clientProperties.keySet()) {
if (clientProperties.get(name) != null) {
element.setAttributeNS(
name.getNamespaceURI(), name.getLocalPart(), clientProperties.get(name).toString());
}
}
}
}
/**
* Returns the VPFFile for a particular column. It will only find the first match, but that should
* be okay because duplicate columns will cause even bigger problems elsewhere.
*
* @param column the column to search for
* @return the VPFFile that owns this column
*/
private VPFFile getVPFFile(AttributeDescriptor column) {
Name columnName = column.getName();
VPFFile result = null;
VPFFile temp;
Iterator<VPFFile> iter = featureType.getFeatureClass().getFileList().iterator();
while (iter.hasNext()) {
temp = iter.next();
if ((temp != null) && (temp.getColumn(columnName.getLocalPart()) != null)) {
result = temp;
break;
}
}
return result;
}
/**
* Handles the encoding of the layers elements.
*
* <p>This method does a search over the SRS of all the layers to see if there are at least a
* common one, as needed by the spec: "<i>The root Layer element shall include a sequence of
* zero or more <SRS> elements listing all SRSes that are common to all subsidiary layers.
* Use a single SRS element with empty content (like so: "<SRS></SRS>") if there is
* no common SRS."</i>
*
* <p>By the other hand, this search is also used to collecto the whole latlon bbox, as stated
* by the spec: <i>"The bounding box metadata in Capabilities XML specify the minimum enclosing
* rectangle for the layer as a whole."</i>
*
* @task TODO: manage this differently when we have the layer list of the WMS service decoupled
* from the feature types configured for the server instance. (This involves nested layers,
* gridcoverages, etc)
*/
private void handleLayers() {
start("Layer");
final List<LayerInfo> layers;
// filter the layers if a namespace filter has been set
if (request.getNamespace() != null) {
final List<LayerInfo> allLayers = wmsConfig.getLayers();
layers = new ArrayList<LayerInfo>();
String namespace = wmsConfig.getNamespaceByPrefix(request.getNamespace());
for (LayerInfo layer : allLayers) {
Name name = layer.getResource().getQualifiedName();
if (name.getNamespaceURI().equals(namespace)) {
layers.add(layer);
}
}
} else {
layers = wmsConfig.getLayers();
}
WMSInfo serviceInfo = wmsConfig.getServiceInfo();
element("Title", serviceInfo.getTitle());
element("Abstract", serviceInfo.getAbstract());
List<String> srsList = serviceInfo.getSRS();
Set<String> srs = new HashSet<String>();
if (srsList != null) {
srs.addAll(srsList);
}
handleRootCrsList(srs);
handleRootBbox(layers);
// now encode each layer individually
LayerTree featuresLayerTree = new LayerTree(layers);
handleLayerTree(featuresLayerTree);
try {
List<LayerGroupInfo> layerGroups = wmsConfig.getLayerGroups();
handleLayerGroups(new ArrayList<LayerGroupInfo>(layerGroups));
} catch (FactoryException e) {
throw new RuntimeException("Can't obtain Envelope of Layer-Groups: " + e.getMessage(), e);
} catch (TransformException e) {
throw new RuntimeException("Can't obtain Envelope of Layer-Groups: " + e.getMessage(), e);
}
end("Layer");
}
/** @return the tree of feature references for this type */
public RevTree getCurrentVersion() {
// assume HEAD is at MASTER
try {
final Name typeName = this.type.getName();
GeoGIT geogit = dataStore.getGeogit();
RevTree typeTree =
geogit
.getRepository()
.getWorkingTree()
.getHeadVersion(new QName(typeName.getNamespaceURI(), typeName.getLocalPart()));
return typeTree;
} catch (Exception e) {
throw new RuntimeException(e);
}
}
/**
* Special handling for polymorphic mapping. Works out the polymorphic type name by evaluating the
* function on the feature, then set the relevant sub-type values.
*
* @param target The target feature to be encoded
* @param id The target feature id
* @param nestedMapping The mapping that is polymorphic
* @param source The source simple feature
* @param xpath The xpath of polymorphic type
* @param clientPropsMappings Client properties
* @throws IOException
*/
private Attribute setPolymorphicValues(
Name mappingName,
Attribute target,
String id,
NestedAttributeMapping nestedMapping,
Object source,
StepList xpath,
Map<Name, Expression> clientPropsMappings)
throws IOException {
// process sub-type mapping
DataAccess<FeatureType, Feature> da = DataAccessRegistry.getDataAccess((Name) mappingName);
if (da instanceof AppSchemaDataAccess) {
// why wouldn't it be? check just to be safe
FeatureTypeMapping fTypeMapping =
((AppSchemaDataAccess) da).getMappingByName((Name) mappingName);
List<AttributeMapping> polymorphicMappings = fTypeMapping.getAttributeMappings();
AttributeDescriptor attDescriptor = fTypeMapping.getTargetFeature();
AttributeType type = attDescriptor.getType();
Name polymorphicTypeName = attDescriptor.getName();
StepList prefixedXpath = xpath.clone();
prefixedXpath.add(
new Step(
new QName(
polymorphicTypeName.getNamespaceURI(),
polymorphicTypeName.getLocalPart(),
this.namespaces.getPrefix(polymorphicTypeName.getNamespaceURI())),
1));
if (!fTypeMapping.getFeatureIdExpression().equals(Expression.NIL)) {
id = fTypeMapping.getFeatureIdExpression().evaluate(source, String.class);
}
Attribute instance =
xpathAttributeBuilder.set(
target, prefixedXpath, null, id, type, false, attDescriptor, null);
setClientProperties(instance, source, clientPropsMappings);
for (AttributeMapping mapping : polymorphicMappings) {
if (skipTopElement(polymorphicTypeName, mapping, type)) {
// if the top level mapping for the Feature itself, the attribute instance
// has already been created.. just need to set the client properties
setClientProperties(instance, source, mapping.getClientProperties());
continue;
}
setAttributeValue(
instance, null, source, mapping, null, null, selectedProperties.get(mapping));
}
return instance;
}
return null;
}
@Override
public PropertyDescriptor getDescriptor(Name name) {
if (name.equals(ComplexFeatureConstants.FEATURE_CHAINING_LINK_NAME)) {
return ComplexFeatureConstants.FEATURE_CHAINING_LINK;
}
return super.getDescriptor(name);
}
private static SimpleScalarAxis createSimpleScalarAxis(
final Name productName, final InternationalString productDescription) {
return new SimpleScalarAxis(
new NameImpl(new StringBuilder("axis:").append(productName.toString()).toString()),
new SimpleInternationalString(
new StringBuilder("axis for product:")
.append(productDescription.toString())
.toString()));
}
public String getContentString() {
StringBuilder sb = new StringBuilder();
sb.append("Layer:").append(name.getLocalPart()).append("\n");
Iterator<Entry<String, String>> it = attributes.entrySet().iterator();
while (it.hasNext()) {
Entry<String, String> next = it.next();
sb.append(next.getKey()).append(":").append(next.getValue()).append("\n");
}
return sb.toString();
}
public HDF4ProductFieldType(
final Name name,
final InternationalString description,
final Unit<?> unit,
final SimpleScalarAxis axis,
final SampleDimension sd) {
Unit<? extends Quantity> uom = unit;
if (unit == null) {
Product product = getProduct(name.getLocalPart());
if (product != null) uom = product.getUoM();
}
this.wrappedFieldType =
new BaseFieldType(
name,
description,
uom,
Collections.singletonList(axis),
Collections.singletonMap(axis.getKey(0), sd));
}
/**
* Delegates to {@link #getFeatureSource(String)} with {@code name.getLocalPart()}
*
* @since 2.5
* @see DataAccess#getFeatureSource(Name)
*/
public SimpleFeatureSource getFeatureSource(Name typeName) throws IOException {
return getFeatureSource(typeName.getLocalPart());
}
/** Sets the local name and namespace uri of the built type. */
public void setName(Name name) {
setName(name.getLocalPart());
setNamespaceURI(name.getNamespaceURI());
}
/** Creates a new instance of FunctionExpression */
protected FunctionExpressionImpl(Name name, Literal fallback) {
this.functionName = new FunctionNameImpl(name, (Class) null);
this.name = name.getLocalPart();
this.fallback = fallback;
params = new ArrayList<org.opengis.filter.expression.Expression>();
}
/**
* Write the feature into the stream.
*
* @param feature The feature
* @param root
* @throws XMLStreamException
*/
public Element writeFeature(final Feature feature, final Document rootDocument, boolean fragment)
throws ParserConfigurationException {
final Document document;
if (rootDocument == null) {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
// then we have to create document-loader:
factory.setNamespaceAware(false);
DocumentBuilder loader = factory.newDocumentBuilder();
// creating a new DOM-document...
document = loader.newDocument();
} else {
document = rootDocument;
}
// the root element of the xml document (type of the feature)
final FeatureType type = feature.getType();
final Name typeName = type.getName();
final String namespace = typeName.getNamespaceURI();
final String localPart = typeName.getLocalPart();
final Element rootElement;
final Prefix prefix;
if (namespace != null) {
prefix = getPrefix(namespace);
rootElement = document.createElementNS(namespace, localPart);
rootElement.setPrefix(prefix.prefix);
} else {
rootElement = document.createElement(localPart);
prefix = null;
}
// if main document set the xmlns
if (!fragment) {
rootElement.setAttributeNS(
"http://www.w3.org/2000/xmlns/", "xmlns:gml", "http://www.opengis.net/gml");
}
final Attr idAttr = document.createAttributeNS(Namespaces.GML, "id");
idAttr.setValue(feature.getIdentifier().getID());
idAttr.setPrefix("gml");
rootElement.setAttributeNodeNS(idAttr);
if (rootDocument == null) {
document.appendChild(rootElement);
}
// write properties in the type order
for (final PropertyDescriptor desc : type.getDescriptors()) {
final Collection<Property> props = feature.getProperties(desc.getName());
for (Property a : props) {
final Object valueA = a.getValue();
final PropertyType typeA = a.getType();
final Name nameA = a.getName();
final String nameProperty = nameA.getLocalPart();
String namespaceProperty = nameA.getNamespaceURI();
if (valueA instanceof Collection && !(typeA instanceof GeometryType)) {
for (Object value : (Collection) valueA) {
final Element element;
if (namespaceProperty != null) {
element = document.createElementNS(namespaceProperty, nameProperty);
} else {
element = document.createElement(nameProperty);
}
element.setTextContent(Utils.getStringValue(value));
if (prefix != null) {
element.setPrefix(prefix.prefix);
}
rootElement.appendChild(element);
}
} else if (valueA instanceof Map && !(typeA instanceof GeometryType)) {
final Map<?, ?> map = (Map) valueA;
for (Entry<?, ?> entry : map.entrySet()) {
final Element element;
if (namespaceProperty != null) {
element = document.createElementNS(namespaceProperty, nameProperty);
} else {
element = document.createElement(nameProperty);
}
final Object key = entry.getKey();
if (key != null) {
element.setAttribute("name", (String) key);
}
element.setTextContent(Utils.getStringValue(entry.getValue()));
if (prefix != null) {
element.setPrefix(prefix.prefix);
}
rootElement.appendChild(element);
}
} else if (!(typeA instanceof GeometryType)) {
String value = Utils.getStringValue(valueA);
if (value != null || (value == null && !a.isNillable())) {
if ((nameProperty.equals("name") || nameProperty.equals("description"))
&& !Namespaces.GML.equals(namespaceProperty)) {
namespaceProperty = Namespaces.GML;
LOGGER.warning(
"the property name and description of a feature must have the GML namespace");
}
final Element element;
if (namespaceProperty != null) {
element = document.createElementNS(namespaceProperty, nameProperty);
} else {
element = document.createElement(nameProperty);
}
if (value != null) {
element.setTextContent(value);
}
if (prefix != null) {
element.setPrefix(prefix.prefix);
}
rootElement.appendChild(element);
}
// we add the geometry
} else {
if (valueA != null) {
final Element element;
if (namespaceProperty != null) {
element = document.createElementNS(namespaceProperty, nameProperty);
} else {
element = document.createElement(nameProperty);
}
if (prefix != null) {
element.setPrefix(prefix.prefix);
}
Geometry isoGeometry =
JTSUtils.toISO(
(com.vividsolutions.jts.geom.Geometry) valueA,
type.getCoordinateReferenceSystem());
Marshaller marshaller = null;
try {
marshaller = POOL.acquireMarshaller();
marshaller.setProperty(Marshaller.JAXB_FRAGMENT, true);
marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, false);
marshaller.marshal(OBJECT_FACTORY.buildAnyGeometry(isoGeometry), element);
} catch (JAXBException ex) {
LOGGER.log(
Level.WARNING,
"JAXB Exception while marshalling the iso geometry: " + ex.getMessage(),
ex);
} finally {
if (marshaller != null) {
POOL.release(marshaller);
}
}
rootElement.appendChild(element);
}
}
}
}
// writer.writeEndElement();
return rootElement;
}
/**
* Delegates to {@link #updateSchema(String, SimpleFeatureType)} with {@code name.getLocalPart()}
*
* @since 2.5
* @see DataAccess#getFeatureSource(Name)
*/
public void updateSchema(Name typeName, SimpleFeatureType featureType) throws IOException {
updateSchema(typeName.getLocalPart(), featureType);
}
/**
* Delegates to {@link #getSchema(String)} with {@code name.getLocalPart()}
*
* @since 2.5
* @see DataAccess#getSchema(Name)
*/
public SimpleFeatureType getSchema(Name name) throws IOException {
return getSchema(name.getLocalPart());
}
static Filter lookupExtendedOperator(
Name opName, List<Expression> expressions, org.opengis.filter.FilterFactory factory) {
FunctionFinder finder = new FunctionFinder(null);
Function f = finder.findFunction(opName.getLocalPart(), expressions);
return factory.equal(f, factory.literal(true), true);
}
@Override
public Property getProperty(Name name) {
return getProperties(name.getLocalPart()).iterator().next();
}