@Override
  public void run(TransformContext context, GtfsMutableRelationalDao dao) {

    Map<String, List<Trip>> tripsByBlockId =
        TripsByBlockInSortedOrder.getTripsByBlockInSortedOrder(dao);

    int hits = 0;
    int total = 0;
    int maxDeviation = 0;

    for (List<Trip> trips : tripsByBlockId.values()) {

      StopTime prev = null;

      for (Trip trip : trips) {

        List<StopTime> stopTimes = dao.getStopTimesForTrip(trip);

        for (StopTime stopTime : stopTimes) {
          total++;
          if (prev != null) {
            if (prev.getDepartureTime() > stopTime.getArrivalTime()) {
              hits++;
              int deviation = prev.getDepartureTime() - stopTime.getArrivalTime();
              maxDeviation = Math.max(maxDeviation, deviation);
              if (deviation > 60)
                _log.info(
                    "out_of_order_stop_times: prev="
                        + prev
                        + " next="
                        + stopTime
                        + " deviation="
                        + deviation);
              stopTime.setArrivalTime(prev.getDepartureTime());
              if (stopTime.getDepartureTime() < stopTime.getArrivalTime())
                stopTime.setDepartureTime(stopTime.getArrivalTime());
            }
          }
          prev = stopTime;
        }
      }
    }

    _log.info("stop times out of order: " + hits + "/" + total + " maxDeviation=" + maxDeviation);
  }
  @Test
  public final void testOnBoardDepartureTime() {
    Coordinate[] coordinates = new Coordinate[5];
    coordinates[0] = new Coordinate(0.0, 0.0);
    coordinates[1] = new Coordinate(0.0, 1.0);
    coordinates[2] = new Coordinate(2.0, 1.0);
    coordinates[3] = new Coordinate(5.0, 1.0);
    coordinates[4] = new Coordinate(5.0, 5.0);

    PatternDepartVertex depart = mock(PatternDepartVertex.class);
    PatternArriveVertex dwell = mock(PatternArriveVertex.class);
    PatternArriveVertex arrive = mock(PatternArriveVertex.class);
    Graph graph = mock(Graph.class);
    RoutingRequest routingRequest = mock(RoutingRequest.class);
    ServiceDay serviceDay = mock(ServiceDay.class);

    when(graph.getTimeZone()).thenReturn(TimeZone.getTimeZone("GMT"));

    GeometryFactory geometryFactory = GeometryUtils.getGeometryFactory();
    CoordinateSequenceFactory coordinateSequenceFactory =
        geometryFactory.getCoordinateSequenceFactory();
    CoordinateSequence coordinateSequence = coordinateSequenceFactory.create(coordinates);
    LineString geometry = new LineString(coordinateSequence, geometryFactory);
    ArrayList<Edge> hops = new ArrayList<Edge>(2);
    RoutingContext routingContext = new RoutingContext(routingRequest, graph, null, arrive);
    AgencyAndId agencyAndId = new AgencyAndId("Agency", "ID");
    Route route = new Route();
    ArrayList<StopTime> stopTimes = new ArrayList<StopTime>(3);
    StopTime stopDepartTime = new StopTime();
    StopTime stopDwellTime = new StopTime();
    StopTime stopArriveTime = new StopTime();
    Stop stopDepart = new Stop();
    Stop stopDwell = new Stop();
    Stop stopArrive = new Stop();
    Trip trip = new Trip();

    routingContext.serviceDays = new ArrayList<ServiceDay>(Collections.singletonList(serviceDay));
    route.setId(agencyAndId);
    stopDepart.setId(agencyAndId);
    stopDwell.setId(agencyAndId);
    stopArrive.setId(agencyAndId);
    stopDepartTime.setStop(stopDepart);
    stopDepartTime.setDepartureTime(0);
    stopDwellTime.setArrivalTime(20);
    stopDwellTime.setStop(stopDwell);
    stopDwellTime.setDepartureTime(40);
    stopArriveTime.setArrivalTime(60);
    stopArriveTime.setStop(stopArrive);
    stopTimes.add(stopDepartTime);
    stopTimes.add(stopDwellTime);
    stopTimes.add(stopArriveTime);
    trip.setId(agencyAndId);
    trip.setTripHeadsign("The right");

    TripTimes tripTimes = new TripTimes(trip, stopTimes, new Deduplicator());
    StopPattern stopPattern = new StopPattern(stopTimes);
    TripPattern tripPattern = new TripPattern(route, stopPattern);

    when(depart.getTripPattern()).thenReturn(tripPattern);
    when(dwell.getTripPattern()).thenReturn(tripPattern);

    PatternHop patternHop0 = new PatternHop(depart, dwell, stopDepart, stopDwell, 0);
    PatternHop patternHop1 = new PatternHop(dwell, arrive, stopDwell, stopArrive, 1);

    hops.add(patternHop0);
    hops.add(patternHop1);

    when(graph.getEdges()).thenReturn(hops);
    when(depart.getCoordinate()).thenReturn(new Coordinate(0, 0));
    when(dwell.getCoordinate()).thenReturn(new Coordinate(0, 0));
    when(arrive.getCoordinate()).thenReturn(new Coordinate(0, 0));
    when(routingRequest.getFrom()).thenReturn(new GenericLocation());
    when(routingRequest.getStartingTransitTripId()).thenReturn(agencyAndId);
    when(serviceDay.secondsSinceMidnight(anyInt())).thenReturn(9);

    patternHop0.setGeometry(geometry);
    tripPattern.add(tripTimes);
    graph.index = new GraphIndex(graph);

    coordinates = new Coordinate[3];
    coordinates[0] = new Coordinate(3.5, 1.0);
    coordinates[1] = new Coordinate(5.0, 1.0);
    coordinates[2] = new Coordinate(5.0, 5.0);

    coordinateSequence = coordinateSequenceFactory.create(coordinates);
    geometry = new LineString(coordinateSequence, geometryFactory);

    Vertex vertex = onBoardDepartServiceImpl.setupDepartOnBoard(routingContext);
    Edge edge = vertex.getOutgoing().toArray(new Edge[1])[0];

    assertEquals(vertex, edge.getFromVertex());
    assertEquals(dwell, edge.getToVertex());
    assertEquals("The right", edge.getDirection());
    assertEquals(geometry, edge.getGeometry());

    assertEquals(coordinates[0].x, vertex.getX(), 0.0);
    assertEquals(coordinates[0].y, vertex.getY(), 0.0);
  }
  @Test
  public final void testOnBoardAtStation() {
    TransitStop station0 = mock(TransitStop.class);
    TransitStop station1 = mock(TransitStop.class);
    TransitStop station2 = mock(TransitStop.class);
    PatternDepartVertex depart = mock(PatternDepartVertex.class);
    PatternArriveVertex dwell = mock(PatternArriveVertex.class);
    PatternArriveVertex arrive = mock(PatternArriveVertex.class);
    Graph graph = mock(Graph.class);
    RoutingRequest routingRequest = mock(RoutingRequest.class);
    ServiceDay serviceDay = mock(ServiceDay.class);

    when(graph.getTimeZone()).thenReturn(TimeZone.getTimeZone("GMT"));

    ArrayList<Edge> hops = new ArrayList<Edge>(2);
    RoutingContext routingContext = new RoutingContext(routingRequest, graph, null, arrive);
    AgencyAndId agencyAndId = new AgencyAndId("Agency", "ID");
    Route route = new Route();
    ArrayList<StopTime> stopTimes = new ArrayList<StopTime>(2);
    StopTime stopDepartTime = new StopTime();
    StopTime stopDwellTime = new StopTime();
    StopTime stopArriveTime = new StopTime();
    Stop stopDepart = new Stop();
    Stop stopDwell = new Stop();
    Stop stopArrive = new Stop();
    Trip trip = new Trip();

    routingContext.serviceDays = new ArrayList<ServiceDay>(Collections.singletonList(serviceDay));
    route.setId(agencyAndId);
    stopDepart.setId(new AgencyAndId("Station", "0"));
    stopDwell.setId(new AgencyAndId("Station", "1"));
    stopArrive.setId(new AgencyAndId("Station", "2"));
    stopDepartTime.setStop(stopDepart);
    stopDepartTime.setDepartureTime(0);
    stopDwellTime.setArrivalTime(20);
    stopDwellTime.setStop(stopDwell);
    stopDwellTime.setDepartureTime(40);
    stopArriveTime.setArrivalTime(60);
    stopArriveTime.setStop(stopArrive);
    stopTimes.add(stopDepartTime);
    stopTimes.add(stopDwellTime);
    stopTimes.add(stopArriveTime);
    trip.setId(agencyAndId);

    TripTimes tripTimes = new TripTimes(trip, stopTimes, new Deduplicator());
    StopPattern stopPattern = new StopPattern(stopTimes);
    TripPattern tripPattern = new TripPattern(route, stopPattern);

    when(depart.getTripPattern()).thenReturn(tripPattern);
    when(dwell.getTripPattern()).thenReturn(tripPattern);

    PatternHop patternHop0 = new PatternHop(depart, dwell, stopDepart, stopDwell, 0);
    PatternHop patternHop1 = new PatternHop(dwell, arrive, stopDwell, stopArrive, 1);

    hops.add(patternHop0);
    hops.add(patternHop1);

    when(graph.getEdges()).thenReturn(hops);
    when(depart.getCoordinate()).thenReturn(new Coordinate(0, 0));
    when(dwell.getCoordinate()).thenReturn(new Coordinate(0, 0));
    when(arrive.getCoordinate()).thenReturn(new Coordinate(0, 0));
    when(routingRequest.getFrom()).thenReturn(new GenericLocation());
    when(routingRequest.getStartingTransitTripId()).thenReturn(agencyAndId);
    when(graph.getVertex("Station_0")).thenReturn(station0);
    when(graph.getVertex("Station_1")).thenReturn(station1);
    when(graph.getVertex("Station_2")).thenReturn(station2);

    tripPattern.add(tripTimes);
    graph.index = new GraphIndex(graph);

    when(serviceDay.secondsSinceMidnight(anyInt())).thenReturn(0);
    assertEquals(station0, onBoardDepartServiceImpl.setupDepartOnBoard(routingContext));

    when(serviceDay.secondsSinceMidnight(anyInt())).thenReturn(20);
    assertEquals(station1, onBoardDepartServiceImpl.setupDepartOnBoard(routingContext));

    when(serviceDay.secondsSinceMidnight(anyInt())).thenReturn(30);
    assertEquals(station1, onBoardDepartServiceImpl.setupDepartOnBoard(routingContext));

    when(serviceDay.secondsSinceMidnight(anyInt())).thenReturn(40);
    assertEquals(station1, onBoardDepartServiceImpl.setupDepartOnBoard(routingContext));

    when(serviceDay.secondsSinceMidnight(anyInt())).thenReturn(60);
    assertEquals(station2, onBoardDepartServiceImpl.setupDepartOnBoard(routingContext));
  }
  @Test
  public final void testOnBoardDepartureAtArrivalTime() {
    Coordinate[] coordinates = new Coordinate[2];
    coordinates[0] = new Coordinate(0.0, 0.0);
    coordinates[1] = new Coordinate(0.0, 1.0);

    TransitStop station0 = mock(TransitStop.class);
    TransitStop station1 = mock(TransitStop.class);
    PatternDepartVertex depart = mock(PatternDepartVertex.class);
    PatternArriveVertex arrive = mock(PatternArriveVertex.class);
    Graph graph = mock(Graph.class);
    RoutingRequest routingRequest = mock(RoutingRequest.class);
    ServiceDay serviceDay = mock(ServiceDay.class);

    when(graph.getTimeZone()).thenReturn(TimeZone.getTimeZone("GMT"));
    when(station0.getX()).thenReturn(coordinates[0].x);
    when(station0.getY()).thenReturn(coordinates[0].y);
    when(station1.getX()).thenReturn(coordinates[1].x);
    when(station1.getY()).thenReturn(coordinates[1].y);

    RoutingContext routingContext = new RoutingContext(routingRequest, graph, null, arrive);
    AgencyAndId agencyAndId = new AgencyAndId("Agency", "ID");
    Route route = new Route();
    ArrayList<StopTime> stopTimes = new ArrayList<StopTime>(2);
    StopTime stopDepartTime = new StopTime();
    StopTime stopArriveTime = new StopTime();
    Stop stopDepart = new Stop();
    Stop stopArrive = new Stop();
    Trip trip = new Trip();

    routingContext.serviceDays = new ArrayList<ServiceDay>(Collections.singletonList(serviceDay));
    route.setId(agencyAndId);
    stopDepart.setId(new AgencyAndId("Station", "0"));
    stopArrive.setId(new AgencyAndId("Station", "1"));
    stopDepartTime.setStop(stopDepart);
    stopDepartTime.setDepartureTime(0);
    stopArriveTime.setArrivalTime(10);
    stopArriveTime.setStop(stopArrive);
    stopTimes.add(stopDepartTime);
    stopTimes.add(stopArriveTime);
    trip.setId(agencyAndId);

    TripTimes tripTimes = new TripTimes(trip, stopTimes, new Deduplicator());
    StopPattern stopPattern = new StopPattern(stopTimes);
    TripPattern tripPattern = new TripPattern(route, stopPattern);

    when(depart.getTripPattern()).thenReturn(tripPattern);

    PatternHop patternHop = new PatternHop(depart, arrive, stopDepart, stopArrive, 0);

    when(graph.getEdges()).thenReturn(Collections.<Edge>singletonList(patternHop));
    when(depart.getCoordinate()).thenReturn(new Coordinate(0, 0));
    when(arrive.getCoordinate()).thenReturn(new Coordinate(0, 0));
    when(routingRequest.getFrom()).thenReturn(new GenericLocation());
    when(routingRequest.getStartingTransitTripId()).thenReturn(agencyAndId);
    when(serviceDay.secondsSinceMidnight(anyInt())).thenReturn(10);
    when(graph.getVertex("Station_0")).thenReturn(station0);
    when(graph.getVertex("Station_1")).thenReturn(station1);

    tripPattern.add(tripTimes);
    graph.index = new GraphIndex(graph);

    Vertex vertex = onBoardDepartServiceImpl.setupDepartOnBoard(routingContext);

    assertEquals(coordinates[1].x, vertex.getX(), 0.0);
    assertEquals(coordinates[1].y, vertex.getY(), 0.0);
  }