private void dumpSurvivalData(Map<String, List<SurvivalData>> survivalData) {
List<String> daysToDeath = new ArrayList<String>();
List<String> lastFollowUp = new ArrayList<String>();
List<String> lastKnownAlive = new ArrayList<String>();
List<String> vitalStatus = new ArrayList<String>();
for (String patientId : new TreeSet<String>(survivalData.keySet())) {
for (SurvivalData sd : survivalData.get(patientId)) {
daysToDeath.add(sd.daysToDeath);
lastFollowUp.add(sd.lastFollowUp);
lastKnownAlive.add(sd.lastKnownAlive);
vitalStatus.add(sd.vitalStatus);
}
System.out.print(patientId + "\t\t");
printList(daysToDeath);
printList(lastFollowUp);
printList(lastKnownAlive);
printList(vitalStatus);
System.out.println();
daysToDeath.clear();
lastFollowUp.clear();
lastKnownAlive.clear();
vitalStatus.clear();
}
}
private List<String> initializeList(int size) {
List<String> os = new ArrayList<String>(size);
for (int lc = 0; lc < size; lc++) {
os.add(lc, "");
}
return os;
}
private List<String> convertFollowupPatientIds(List<String> patientIds) {
List<String> convertedPatientIds = new ArrayList<String>();
for (String patientId : patientIds) {
Matcher patientIdMatcher = FOLLOW_UP_PATIENT_ID_REGEX.matcher(patientId);
convertedPatientIds.add(patientIdMatcher.find() ? patientIdMatcher.group(1) : patientId);
}
return convertedPatientIds;
}