private boolean rangeIsValid(DesignParameters p) {
try {
CsvReader fileReader = new CsvFileReader(new File(p.getGenotype()));
int rows = fileReader.rownames().size();
if (p.getRangeStart() != null && p.getRangeEnd() != null)
for (int i = 0; i < p.getRangeStart().size(); i++) {
int start = Integer.parseInt((String) p.getRangeStart().get(i));
int end = Integer.parseInt((String) p.getRangeEnd().get(i));
logger.debug("" + start + "-" + end);
if (start < 1 || end > rows) {
this.setArgMissing(
"Marker range should be in [1,maxindex makers="
+ rows
+ ")], found [start="
+ start
+ ",end="
+ end
+ "]");
return false;
} else if (end < start) {
this.setArgMissing(
"marker range 'start' should be lower than 'end', found [start="
+ start
+ ",end="
+ end
+ "]");
return false;
}
}
} catch (Exception e) {
e.printStackTrace();
this.setArgMissing(e.getMessage());
return false;
}
return true;
}
