/**
* Primary entry point for the program.
*
* @throws Exception
*/
public void run(String[] args) throws Exception {
synchronized (ResourceManager.instance()) {
// Parse the command line ...
CommandLine cl = null;
Options options = getCommandOptions();
try {
cl = new BasicParser().parse(options, args);
} catch (ParseException e) {
Util.displayCommandOptions(
"TagScheme",
options,
"TagScheme -u \"urn:oid:2.16.840.1.113883.3.26.1.1\" -v \"05.09e\" -t \"TEST\"",
e);
Util.displayMessage(Util.getPromptForSchemeHelp());
return;
}
// Interpret provided values ...
String urn = cl.getOptionValue("u");
String ver = cl.getOptionValue("v");
String tag = cl.getOptionValue("t").trim();
CodingSchemeSummary css = null;
// Find in list of registered vocabularies ...
if (urn != null && ver != null) {
urn = urn.trim();
ver = ver.trim();
LexBIGService lbs = LexBIGServiceImpl.defaultInstance();
Enumeration<? extends CodingSchemeRendering> schemes =
lbs.getSupportedCodingSchemes().enumerateCodingSchemeRendering();
while (schemes.hasMoreElements() && css == null) {
CodingSchemeSummary summary = schemes.nextElement().getCodingSchemeSummary();
if (urn.equalsIgnoreCase(summary.getCodingSchemeURI())
&& ver.equalsIgnoreCase(summary.getRepresentsVersion())) css = summary;
}
}
// Found it? If not, prompt...
if (css == null) {
if (urn != null || ver != null) {
Util.displayMessage("No matching coding scheme was found for the given URN or version.");
Util.displayMessage("");
}
css = Util.promptForCodeSystem();
if (css == null) return;
}
// Continue and perform the action ...
Util.displayTaggedMessage("A matching coding scheme was found ...");
LexBIGServiceManager lbsm =
LexBIGServiceImpl.defaultInstance().getServiceManager(new Object());
lbsm.setVersionTag(Constructors.createAbsoluteCodingSchemeVersionReference(css), tag);
Util.displayTaggedMessage("Request complete");
}
}
public void run() throws LBException {
ValueSetDefinition vsd = Util.promptForValueSetDefinition(message);
if (vsd != null) {
AbsoluteCodingSchemeVersionReferenceList acsvList = null;
Util.displayMessage("Now select Code System to use to resolve Value Set Definition");
CodingSchemeSummary css = Util.promptForCodeSystem();
if (css != null) {
acsvList = new AbsoluteCodingSchemeVersionReferenceList();
acsvList.addAbsoluteCodingSchemeVersionReference(
Constructors.createAbsoluteCodingSchemeVersionReference(
css.getCodingSchemeURI(), css.getRepresentsVersion()));
}
LexEVSValueSetDefinitionServices vsdServ =
LexEVSValueSetDefinitionServicesImpl.defaultInstance();
ResolvedValueSetDefinition rVSD = null;
try {
rVSD =
vsdServ.resolveValueSetDefinition(
new URI(vsd.getValueSetDefinitionURI()), null, acsvList, null, null);
} catch (URISyntaxException e) {
e.printStackTrace();
}
if (rVSD != null) {
Util.displayMessage(
"Member of Value Set Definition (" + vsd.getValueSetDefinitionURI() + ") are :");
ResolvedConceptReferencesIterator conceptItr = rVSD.getResolvedConceptReferenceIterator();
while (conceptItr.hasNext()) {
ResolvedConceptReference concept = conceptItr.next();
Util.displayMessage("Concept code : " + concept.getCode());
Util.displayMessage("\tCoding Scheme Name...: " + concept.getCodingSchemeName());
Util.displayMessage("\tCoding Scheme URI....: " + concept.getCodingSchemeURI());
Util.displayMessage("\tCoding Scheme Version: " + concept.getCodingSchemeVersion());
}
} else {
Util.displayMessage(
"No members found for Value Set Definition : '" + vsd.getValueSetDefinitionURI() + "'");
}
}
}