@Override
public List<CommitteeMembershipBase> getAvailableCommitteeMembersForCurrentSubmission(
ProtocolBase protocol) {
List<CommitteeMembershipBase> results = new ArrayList<CommitteeMembershipBase>();
ProtocolSubmissionBase submission = protocol.getProtocolSubmission();
submission.refreshReferenceObject("protocolOnlineReviews");
if (LOG.isDebugEnabled()) {
LOG.debug(
String.format(
"Fetching available committee members for protocol %s, submission %s",
protocol.getProtocolNumber(), submission.getSubmissionNumber()));
}
List<ProtocolOnlineReviewBase> currentReviews = submission.getProtocolOnlineReviews();
List<CommitteeMembershipBase> committeeMembers =
getCommitteeService()
.getAvailableMembers(submission.getCommitteeId(), submission.getScheduleId());
// TODO: Make this better.
for (CommitteeMembershipBase member : committeeMembers) {
boolean found = false;
for (ProtocolOnlineReviewBase review : currentReviews) {
if (review.getProtocolReviewer().isProtocolReviewerFromCommitteeMembership(member)
&& review.isActive()) {
found = true;
break;
}
}
if (!found && !isProtocolPersonnel(protocol, member)) {
results.add(member);
}
}
return results;
}
@Override
public void cancelOnlineReviews(ProtocolSubmissionBase submission, String annotation) {
// get the online reviews, loop through them and finalize them if necessary.
for (ProtocolOnlineReviewBase review : submission.getProtocolOnlineReviews()) {
cancelOnlineReviewDocument(review.getProtocolOnlineReviewDocument(), submission, annotation);
}
}
@Override
public void moveOnlineReviews(
ProtocolSubmissionBase submission, ProtocolSubmissionBase newSubmission) {
newSubmission.setProtocolOnlineReviews(new ArrayList<ProtocolOnlineReviewBase>());
for (ProtocolOnlineReviewBase review : submission.getProtocolOnlineReviews()) {
review.setProtocol(newSubmission.getProtocol());
review.setProtocolId(newSubmission.getProtocol().getProtocolId());
review.setSubmissionIdFk(newSubmission.getSubmissionId());
if (CollectionUtils.isNotEmpty(review.getCommitteeScheduleMinutes())) {
for (CommitteeScheduleMinuteBase comment : review.getCommitteeScheduleMinutes()) {
comment.setProtocolIdFk(review.getProtocolId());
comment.setScheduleIdFk(newSubmission.getScheduleIdFk());
}
}
newSubmission.getProtocolOnlineReviews().add(review);
}
}
@Override
public void finalizeOnlineReviews(ProtocolSubmissionBase submission, String annotation) {
// get the online reviews, loop through them and finalize them if necessary.
for (ProtocolOnlineReviewBase review : submission.getProtocolOnlineReviews()) {
//
// review.addActionPerformed("Finalize:"+review.getProtocolOnlineReviewDocument().getDocumentHeader().getWorkflowDocument().getStatus().getCode()+":"+review.getProtocolOnlineReviewStatusCode());
finalizeOnlineReviewDocument(
review.getProtocolOnlineReviewDocument(), submission, annotation);
}
}
@Override
public boolean isProtocolReviewer(
String personId, boolean nonEmployeeFlag, ProtocolSubmissionBase protocolSubmission) {
boolean isReviewer = false;
if (protocolSubmission != null) {
for (ProtocolOnlineReviewBase review : protocolSubmission.getProtocolOnlineReviews()) {
if (review.getProtocolReviewer().isPersonIdProtocolReviewer(personId, nonEmployeeFlag)
&& review.isActive()) {
isReviewer = true;
break;
}
}
}
return isReviewer;
}
@Override
public List<ProtocolOnlineReviewBase> getProtocolReviews(Long submissionId) {
List<ProtocolOnlineReviewBase> reviews = new ArrayList<ProtocolOnlineReviewBase>();
ProtocolSubmissionBase submission =
getBusinessObjectService()
.findBySinglePrimaryKey(getProtocolSubmissionBOClassHook(), submissionId);
if (submission != null) {
for (ProtocolOnlineReviewBase review : submission.getProtocolOnlineReviews()) {
if (review.isActive()) {
reviews.add(review);
}
}
}
return reviews;
}
@Override
public ProtocolReviewer getProtocolReviewer(
String personId, boolean nonEmployeeFlag, ProtocolSubmissionBase protocolSubmission) {
ProtocolReviewer protocolReviewer = null;
if (protocolSubmission != null) {
for (ProtocolOnlineReviewBase protocolOnlineReview :
protocolSubmission.getProtocolOnlineReviews()) {
if (protocolOnlineReview
.getProtocolReviewer()
.isPersonIdProtocolReviewer(personId, nonEmployeeFlag)
&& protocolOnlineReview.isActive()) {
protocolReviewer = protocolOnlineReview.getProtocolReviewer();
break;
}
}
}
return protocolReviewer;
}
@Override
public ProtocolOnlineReviewDocumentBase getProtocolOnlineReviewDocument(
String personId, boolean nonEmployeeFlag, ProtocolSubmissionBase protocolSubmission) {
ProtocolOnlineReviewDocumentBase protocolOnlineReviewDocument = null;
if (protocolSubmission != null) {
for (ProtocolOnlineReviewBase protocolOnlineReview :
protocolSubmission.getProtocolOnlineReviews()) {
if (protocolOnlineReview
.getProtocolReviewer()
.isPersonIdProtocolReviewer(personId, nonEmployeeFlag)
&& protocolOnlineReview.isActive()) {
try {
protocolOnlineReviewDocument =
(ProtocolOnlineReviewDocumentBase)
getDocumentService()
.getByDocumentHeaderId(
protocolOnlineReview
.getProtocolOnlineReviewDocument()
.getDocumentNumber());
} catch (WorkflowException e) {
if (LOG.isDebugEnabled()) {
String errorMessage =
String.format(
"WorkflowException encountered while looking up document number %s for ProtocolOnlineReviewDocumentBase associated with (submissionId=%s,personId=%s,nonEmployeeFlag=%s",
protocolOnlineReview.getProtocolOnlineReviewDocument().getDocumentNumber(),
protocolSubmission.getSubmissionId(),
personId,
nonEmployeeFlag);
LOG.error(errorMessage, e);
throw new RuntimeException(errorMessage, e);
}
}
}
}
}
return protocolOnlineReviewDocument;
}
@Override
public void removeOnlineReviewDocument(
String personId,
boolean nonEmployeeFlag,
ProtocolSubmissionBase submission,
String annotation) {
ProtocolOnlineReviewDocumentBase protocolOnlineReviewDocument =
this.getProtocolOnlineReviewDocument(personId, nonEmployeeFlag, submission);
ProtocolOnlineReviewBase submissionsProtocolOnlineReview = null;
for (ProtocolOnlineReviewBase rev : submission.getProtocolOnlineReviews()) {
if (rev.getProtocolOnlineReviewId()
.equals(
protocolOnlineReviewDocument.getProtocolOnlineReview().getProtocolOnlineReviewId())) {
submissionsProtocolOnlineReview = rev;
break;
}
}
if (submissionsProtocolOnlineReview == null) {
throw new IllegalStateException(
"Could not match OnlineReview document being removed to a protocolOnlineReview in the submission.");
}
if (LOG.isDebugEnabled()) {
LOG.debug(
String.format(
"Processing request to remove online review for (personId=%s,nonEmployeeFlag=%s) from (protocol=%s,submission=%s)",
personId,
nonEmployeeFlag,
submission.getProtocol().getProtocolNumber(),
submission.getSubmissionNumber()));
}
if (protocolOnlineReviewDocument != null) {
if (LOG.isDebugEnabled()) {
LOG.debug(
String.format(
"Found protocolOnlineReviewDocument %s, removing it.",
protocolOnlineReviewDocument.getDocumentNumber()));
}
cancelOnlineReviewDocument(protocolOnlineReviewDocument, submission, annotation);
submissionsProtocolOnlineReview.setProtocolOnlineReviewStatusCode(
getProtocolOLRRemovedCancelledStatusCodeHook());
List<CommitteeScheduleMinuteBase> reviewComments =
protocolOnlineReviewDocument.getProtocolOnlineReview().getCommitteeScheduleMinutes();
List<CommitteeScheduleMinuteBase> deletedReviewComments =
new ArrayList<CommitteeScheduleMinuteBase>();
getReviewerCommentsService().deleteAllReviewComments(reviewComments, deletedReviewComments);
getReviewerCommentsService().saveReviewComments(reviewComments, deletedReviewComments);
getBusinessObjectService().save(submissionsProtocolOnlineReview);
} else {
LOG.warn(
String.format(
"ProtocolBase Online Review document could not be found for (personId=%s,nonEmployeeFlag=%s) from (protocol=%s,submission=%s)",
personId,
nonEmployeeFlag,
submission.getProtocol().getProtocolNumber(),
submission.getSubmissionNumber()));
}
}
