/** {@inheritDoc} */
@Override
protected void saveInternals(final File internDir, final ExecutionMonitor exec)
throws IOException, CanceledExecutionException {
// save m_muscle_map...
ModelContent modelContent = new ModelContent("muscle-internals.model");
String[] keys = m_muscle_map.keySet().toArray(new String[0]);
modelContent.addStringArray("internal-muscle-map-keys", keys);
ModelContentWO subkey = modelContent.addModelContent("internal-muscle-map");
for (String key : keys) {
subkey.addDataCell(key, m_muscle_map.get(key));
}
// create the XML file alongside the rest of the node data (same folder)
File file = new File(internDir, "muscle-internals.xml");
FileOutputStream fos = new FileOutputStream(file);
modelContent.saveToXML(fos);
}
/** {@inheritDoc} */
@Override
protected void loadInternals(final File internDir, final ExecutionMonitor exec)
throws IOException, CanceledExecutionException {
File file = new File(internDir, "muscle-internals.xml");
FileInputStream fis = new FileInputStream(file);
ModelContentRO modelContent = ModelContent.loadFromXML(fis);
try {
String[] keys = modelContent.getStringArray("internal-muscle-map-keys");
m_muscle_map.clear();
ModelContentRO subkey = modelContent.getModelContent("internal-muscle-map");
for (String key : keys) {
DataCell dc = subkey.getDataCell(key);
if (dc instanceof MultiAlignmentCell) {
m_muscle_map.put(key, (MultiAlignmentCell) dc);
}
}
fis.close();
} catch (InvalidSettingsException e) {
throw new IOException(e.getMessage());
}
}
