@Test
public void testNormalizer() throws Exception {
ExtSed sed1 = new ExtSed("Sed1");
ExtSed sed2 = new ExtSed("Sed2");
ExtSed sed3 = new ExtSed("Sed3");
Segment seg1 = new Segment();
for (int k = 0; k < x1.length; k++) {
y1[k] = y1[k] * 1e23;
yerr1[k] = yerr1[k] * 1e23;
}
seg1.setFluxAxisValues(y1);
seg1.setSpectralAxisValues(x1);
seg1.setFluxAxisUnits("Jy");
seg1.setSpectralAxisUnits("Angstrom");
seg1.setDataValues(yerr1, UTYPE.FLUX_STAT_ERROR);
sed1.addSegment(seg1);
Segment seg2 = new Segment();
seg2.setFluxAxisValues(y2);
seg2.setSpectralAxisValues(x2);
seg2.setFluxAxisUnits("erg/s/cm2/Hz");
seg2.setSpectralAxisUnits("Angstrom");
seg2.setDataValues(yerr2, UTYPE.FLUX_STAT_ERROR);
sed2.addSegment(seg2);
Segment seg3 = new Segment();
seg3.setFluxAxisValues(y3);
// convert the values in x3 to nm so I can test the unit conversions
// too.
for (int k = 0; k < x3.length; k++) {
x3[k] = x3[k] * 0.1;
}
seg3.setSpectralAxisValues(x3);
seg3.setFluxAxisUnits("erg/s/cm2/Hz");
seg3.setSpectralAxisUnits("nm");
seg3.setDataValues(yerr3, UTYPE.FLUX_STAT_ERROR);
sed3.addSegment(seg3);
SedStack stack = new SedStack("Stack");
stack.add(sed1);
stack.add(sed2);
stack.add(sed3);
// setup the redshift configuration
NormalizationConfiguration config = new NormalizationConfiguration();
config.setMultiply(true);
config.setIntegrate(true);
config.setStats("Average");
config.setXUnits("Angstrom");
config.setXmax(Double.POSITIVE_INFINITY);
config.setXmin(Double.NEGATIVE_INFINITY);
config.setIntegrateValueYUnits("erg/s/cm2/Hz");
config.setYValue(1.0);
// normalize the Stack
SedStackerNormalizer normalizer =
new SedStackerNormalizer(client, Default.getInstance().getUnitsManager());
normalizer.normalize(stack, config);
List<double[]> xs = new ArrayList<>();
List<double[]> ys = new ArrayList<>();
xs.add(x1);
xs.add(x2);
xs.add(x3);
ys.add(y1);
ys.add(y2);
ys.add(y3);
// stack.getOrigSeds() should return original seds
for (int j = 0; j < stack.getOrigSeds().size(); j++) {
ExtSed origSed = stack.getOrigSeds().get(j);
double[] x = xs.get(j);
double[] y = ys.get(j);
for (int i = 0; i < stack.getOrigSeds().get(j).getSegment(0).getLength(); i++) {
double xOrigValue = origSed.getSegment(0).getSpectralAxisValues()[i];
double yOrigValue = origSed.getSegment(0).getFluxAxisValues()[i];
assertEquals(xOrigValue, x[i], EPSILON);
assertEquals(yOrigValue, y[i], EPSILON);
}
}
for (int j = 0; j < stack.getSed(0).getSegment(0).getLength(); j++)
assertEquals(
0.49234923 * y1[j],
stack.getSed(0).getSegment(0).getFluxAxisValues()[j],
EPSILON * 0.49234923 * y1[j]);
for (int j = 0; j < stack.getSed(1).getSegment(0).getLength(); j++)
assertEquals(9.846 * y2[j], stack.getSed(1).getSegment(0).getFluxAxisValues()[j], EPSILON);
assertEquals(
1.1529274,
Double.valueOf(stack.getSed(2).getAttachment(NORM_CONSTANT).toString()),
EPSILON);
}
@Test
public void testStacker() throws Exception {
ExtSed sed1 = new ExtSed("Sed1");
ExtSed sed2 = new ExtSed("Sed2");
ExtSed sed3 = new ExtSed("Sed3");
Segment seg1 = new Segment();
for (int k = 0; k < x1.length; k++) {
y1[k] = y1[k] * 1e23;
yerr1[k] = yerr1[k] * 1e23;
}
seg1.setFluxAxisValues(y1);
seg1.setSpectralAxisValues(x1);
seg1.setFluxAxisUnits("Jy");
seg1.setSpectralAxisUnits("Angstrom");
seg1.setDataValues(yerr1, UTYPE.FLUX_STAT_ERROR);
sed1.addSegment(seg1);
Segment seg2 = new Segment();
seg2.setFluxAxisValues(y2);
seg2.setSpectralAxisValues(x2);
seg2.setFluxAxisUnits("erg/s/cm2/Hz");
seg2.setSpectralAxisUnits("Angstrom");
seg2.setDataValues(yerr2, UTYPE.FLUX_STAT_ERROR);
sed2.addSegment(seg2);
Segment seg3 = new Segment();
seg3.setFluxAxisValues(y3);
// convert the values in x3 to nm so I can test the unit conversions
// too.
int k = 0;
for (double x : x3) {
x3[k] = x * 0.1;
k++;
}
seg3.setSpectralAxisValues(x3);
seg3.setFluxAxisUnits("erg/s/cm2/Hz");
seg3.setSpectralAxisUnits("nm");
seg3.setDataValues(yerr3, UTYPE.FLUX_STAT_ERROR);
sed3.addSegment(seg3);
SedStack stack = new SedStack("Stack");
stack.add(sed1);
stack.add(sed2);
stack.add(sed3);
// setup the stacking configuration
StackConfiguration config = new StackConfiguration();
config.setBinsize(2.0);
config.setBinsizeUnit("Angstrom");
config.setLogbin(false);
config.setSmooth(false);
config.setSmoothBinsize(20.);
config.setStatistic("avg");
config.setYUnits("erg/s/cm2/Hz");
// stack
stacker = new SedStackerStacker(client, (UnitsManager) null);
ExtSed result = stacker.stack(stack, config);
List<double[]> xs = new ArrayList<>();
List<double[]> ys = new ArrayList<>();
xs.add(x1);
xs.add(x2);
xs.add(x3);
ys.add(y1);
ys.add(y2);
ys.add(y3);
// stack.getOrigSeds() should return original seds
for (int j = 0; j < stack.getOrigSeds().size(); j++) {
ExtSed origSed = stack.getOrigSeds().get(j);
double[] x = xs.get(j);
double[] y = ys.get(j);
for (int i = 0; i < stack.getOrigSeds().get(j).getSegment(0).getLength(); i++) {
double xOrigValue = origSed.getSegment(0).getSpectralAxisValues()[i];
double yOrigValue = origSed.getSegment(0).getFluxAxisValues()[i];
assertEquals(xOrigValue, x[i], EPSILON);
assertEquals(yOrigValue, y[i], EPSILON);
}
}
double[] controlY =
new double[] {5.0, 5.36666667, 4.5, 2.66666667, 4.0, 6.5, 1.5, 10.5, 5.0, 10.0};
double[] controlX = new double[] {0., 2., 4., 6., 8., 10., 16., 22., 50., 100.};
// double[] controlYerr = new double[] {0.5, 0.501120965, 0.3640055,
// 0.18104634, 0.4, 0.48102899, 0.15, 1.05, 0.5, 1.0}; // calculated
// from errors [sqrt(sum(errors^2))/N]
double[] controlYerr =
new double[] {0, 6.82169741, 2.5, 1.64991582, 0., 5.21216526, 0., 0., 0., 0.}; // calculated
// from
// stddev(flux)
double[] controlCounts = new double[] {1, 3, 2, 3, 1, 3, 1, 1, 1, 1};
// test values of stacked Sed
double[] yerrValues = (double[]) result.getSegment(0).getDataValues(UTYPE.FLUX_STAT_ERROR);
double[] counts = (double[]) result.getAttachment(COUNTS);
for (int i = 0; i < result.getSegment(0).getLength(); i++) {
double xValue = result.getSegment(0).getSpectralAxisValues()[i];
double yValue = result.getSegment(0).getFluxAxisValues()[i];
assertEquals(controlX[i], xValue, EPSILON);
assertEquals(controlY[i], yValue, EPSILON);
assertEquals(controlYerr[i], yerrValues[i], EPSILON);
assertEquals(controlCounts[i], counts[i], EPSILON);
}
}
@Test
public void testNormalizerOutsideRange() throws Exception {
ExtSed sed1 = new ExtSed("Sed1");
ExtSed sed2 = new ExtSed("Sed2");
ExtSed sed3 = new ExtSed("Sed3");
Segment seg1 = new Segment();
// for (int k=0; k<x1.length; k++) {
// y1[k] = y1[k]*1e23;
// yerr1[k] = yerr1[k]*1e23;
// }
seg1.setFluxAxisValues(y1);
seg1.setSpectralAxisValues(x1);
seg1.setFluxAxisUnits("erg/s/cm2/Angstrom");
seg1.setSpectralAxisUnits("Angstrom");
seg1.setDataValues(yerr1, UTYPE.FLUX_STAT_ERROR);
sed1.addSegment(seg1);
Segment seg2 = new Segment();
seg2.setFluxAxisValues(y2);
seg2.setSpectralAxisValues(x2);
seg2.setFluxAxisUnits("erg/s/cm2/Angstrom");
seg2.setSpectralAxisUnits("Angstrom");
seg2.setDataValues(yerr2, UTYPE.FLUX_STAT_ERROR);
sed2.addSegment(seg2);
Segment seg3 = new Segment();
seg3.setFluxAxisValues(y3);
// convert the values in x3 to nm so I can test the unit conversions
// too.
for (int k = 0; k < x3.length; k++) {
x3[k] = x3[k] * 0.1;
}
seg3.setSpectralAxisValues(x3);
seg3.setFluxAxisUnits("erg/s/cm2/Angstrom");
seg3.setSpectralAxisUnits("nm");
seg3.setDataValues(yerr3, UTYPE.FLUX_STAT_ERROR);
sed3.addSegment(seg3);
SedStack stack = new SedStack("Stack");
stack.add(sed1);
stack.add(sed2);
stack.add(sed3);
// setup the redshift configuration
NormalizationConfiguration config = new NormalizationConfiguration();
config.setMultiply(true);
config.setIntegrate(true);
config.setStats("Value");
config.setXUnits("Angstrom");
config.setXmax(9.0);
config.setXmin(1.5);
config.setIntegrateValueYUnits("erg/s/cm2");
config.setYValue(1.0);
// normalize the Stack
normalizeWithWindowInterceptor(stack, config);
List<double[]> xs = new ArrayList<>();
List<double[]> ys = new ArrayList<>();
xs.add(x1);
xs.add(x2);
xs.add(x3);
ys.add(y1);
ys.add(y2);
ys.add(y3);
// stack.getOrigSeds() should return original seds
for (int j = 0; j < stack.getOrigSeds().size(); j++) {
ExtSed origSed = stack.getOrigSeds().get(j);
double[] x = xs.get(j);
double[] y = ys.get(j);
for (int i = 0; i < stack.getOrigSeds().get(j).getSegment(0).getLength(); i++) {
double xOrigValue = origSed.getSegment(0).getSpectralAxisValues()[i];
double yOrigValue = origSed.getSegment(0).getFluxAxisValues()[i];
assertEquals(xOrigValue, x[i], EPSILON);
assertEquals(yOrigValue, y[i], EPSILON);
}
}
for (int j = 0; j < stack.getSed(0).getSegment(0).getLength(); j++)
assertEquals(y1[j], stack.getSed(0).getSegment(0).getFluxAxisValues()[j], EPSILON);
for (int j = 0; j < stack.getSed(1).getSegment(0).getLength(); j++)
assertEquals(0.0625 * y2[j], stack.getSed(1).getSegment(0).getFluxAxisValues()[j], EPSILON);
assertEquals(
0.035714285714,
Double.valueOf(stack.getSed(2).getAttachment(NORM_CONSTANT).toString()),
EPSILON);
}