/**
* delivers file contents and directory listing for a ZIP/JAR file into sb
*
* @param name
* @param header
* @param fileData
* @return name of entry
*/
private String getObjectAsSections(String name, String header, Map<String, String> fileData) {
if (name == null) return null;
String[] subFileList = null;
boolean asBinaryString = false;
String name0 = name.replace('\\', '/');
if (name.indexOf(":asBinaryString") >= 0) {
asBinaryString = true;
name = name.substring(0, name.indexOf(":asBinaryString"));
}
SB sb = null;
if (fileData.containsKey(name0)) return name0;
if (name.indexOf("#JMOL_MODEL ") >= 0) {
fileData.put(name0, name0 + "\n");
return name0;
}
String fullName = name;
if (name.indexOf("|") >= 0) {
subFileList = PT.split(name, "|");
name = subFileList[0];
}
BufferedInputStream bis = null;
try {
Object t =
getBufferedInputStreamOrErrorMessageFromName(name, fullName, false, false, null, false);
if (t instanceof String) {
fileData.put(name0, (String) t + "\n");
return name0;
}
bis = (BufferedInputStream) t;
if (JmolBinary.isCompoundDocumentS(bis)) {
JmolDocument doc = (JmolDocument) Interface.getOptionInterface("io2.CompoundDocument");
doc.setStream(bis, true);
doc.getAllDataMapped(name.replace('\\', '/'), "Molecule", fileData);
} else if (JmolBinary.isZipS(bis)) {
JmolBinary.getAllZipData(bis, subFileList, name.replace('\\', '/'), "Molecule", fileData);
} else if (asBinaryString) {
// used for Spartan binary file reading
JmolDocument bd = (JmolDocument) Interface.getOptionInterface("io2.BinaryDocument");
bd.setStream(bis, false);
sb = new SB();
// note -- these headers must match those in ZipUtil.getAllData and
// CompoundDocument.getAllData
if (header != null) sb.append("BEGIN Directory Entry " + name0 + "\n");
try {
while (true) sb.append(Integer.toHexString(bd.readByte() & 0xFF)).appendC(' ');
} catch (Exception e1) {
sb.appendC('\n');
}
if (header != null) sb.append("\nEND Directory Entry " + name0 + "\n");
fileData.put(name0, sb.toString());
} else {
BufferedReader br =
JmolBinary.getBufferedReader(
JmolBinary.isGzipS(bis)
? new BufferedInputStream(JmolBinary.newGZIPInputStream(bis))
: bis,
null);
String line;
sb = new SB();
if (header != null) sb.append("BEGIN Directory Entry " + name0 + "\n");
while ((line = br.readLine()) != null) {
sb.append(line);
sb.appendC('\n');
}
br.close();
if (header != null) sb.append("\nEND Directory Entry " + name0 + "\n");
fileData.put(name0, sb.toString());
}
} catch (Exception ioe) {
fileData.put(name0, ioe.toString());
}
if (bis != null)
try {
bis.close();
} catch (Exception e) {
//
}
if (!fileData.containsKey(name0)) fileData.put(name0, "FILE NOT FOUND: " + name0 + "\n");
return name0;
}
