/**
* DOCUMENT ME!
*
* @throws IllegalStateException DOCUMENT ME!
*/
private void init() {
final String json = (String) cidsBean.getProperty("uri"); // NOI18N
final ObjectMapper mapper = new ObjectMapper();
final IDFCurve curve;
try {
curve = mapper.readValue(new StringReader(json), IDFCurve.class);
} catch (IOException ex) {
final String message = "cannot read idf data from uri"; // NOI18N
LOG.error(message, ex);
throw new IllegalStateException(message, ex);
}
// Create Chart
final XYDataset dataset = createDataset(curve);
final String name = (String) cidsBean.getProperty("name"); // NOI18N
final String xAxisTitle = "Duration (min)";
final String yAxisTitle = "Intensity (mm/h)";
final JFreeChart chart = createChart(dataset, name, xAxisTitle, yAxisTitle);
final ChartPanel chartPanel = new ChartPanel(chart);
chartPanel.setMouseZoomable(true, true);
chartPanel.setMouseWheelEnabled(true);
chartPanel.setPopupMenu(null);
pnlChart.add(chartPanel, BorderLayout.CENTER);
}
public static JPanel createDemoPanel(
float[][] x1,
float[][] y,
String applicationTitle,
String chartTitle,
String xlabel,
String ylabel,
String name) {
XYDataset x = createDataset(x1, y);
JFreeChart chart = createChart(x, applicationTitle, chartTitle, xlabel, ylabel, name);
ChartPanel chartPanel = new ChartPanel(chart);
// chartPanel.setVerticalAxisTrace(true);
// chartPanel.setHorizontalAxisTrace(true);
// popup menu conflicts with axis trace
chartPanel.setPopupMenu(null);
chartPanel.setDomainZoomable(true);
chartPanel.setRangeZoomable(true);
return chartPanel;
}
private void createGUI() throws Exception {
getContentPane().setLayout(new BorderLayout());
this.chartPanel = createDemoPanel();
JFreeChart chart = chartPanel.getChart();
this.toolBar = createToolbar();
scrollBar = new ChartScrollBar(JScrollBar.HORIZONTAL, chart);
// this.toolBar.add(scrollBar);
this.getContentPane().add(this.toolBar, BorderLayout.NORTH);
this.getContentPane().add(this.scrollBar, BorderLayout.SOUTH);
// remove popup menu to allow panning
// with right mouse pressed
chartPanel.setPopupMenu(null);
chartPanel.restoreAutoBounds();
this.getContentPane().add(this.chartPanel);
}
/**
* @param name Chart name
* @param parent Skeleton parent
* @param axes Configuration of axes
* @param abcissaName Abcissa name
*/
public SwingChart(String name, final Skeleton parent, List<AxisChart> axes, String abcissaName) {
this.skeleton = parent;
this.axes = axes;
this.name = name;
this.abcissaFormat = NumberFormat.getInstance(Locale.getDefault());
this.ordinateFormat = NumberFormat.getInstance(Locale.getDefault());
plot = new XYPlot();
plot.setBackgroundPaint(scene2awtColor(javafx.scene.paint.Color.web(strChartBackgroundColor)));
plot.setDomainGridlinePaint(scene2awtColor(javafx.scene.paint.Color.web(strGridlineColor)));
plot.setRangeGridlinePaint(scene2awtColor(javafx.scene.paint.Color.web(strGridlineColor)));
plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
abcissaAxis = new NumberAxis(abcissaName);
((NumberAxis) abcissaAxis).setAutoRangeIncludesZero(false);
abcissaAxis.setTickLabelFont(new Font("SansSerif", Font.PLAIN, 12));
abcissaAxis.setLabelFont(new Font("SansSerif", Font.PLAIN, 12));
abcissaAxis.setLabelPaint(scene2awtColor(javafx.scene.paint.Color.web(strTickColor)));
abcissaAxis.setTickLabelPaint(scene2awtColor(javafx.scene.paint.Color.web(strTickColor)));
abcissaAxis.setAutoRange(true);
abcissaAxis.setLowerMargin(0.0);
abcissaAxis.setUpperMargin(0.0);
abcissaAxis.setTickLabelsVisible(true);
abcissaAxis.setLabelFont(abcissaAxis.getLabelFont().deriveFont(fontSize));
abcissaAxis.setTickLabelFont(abcissaAxis.getLabelFont().deriveFont(fontSize));
plot.setDomainAxis(abcissaAxis);
for (int i = 0; i < axes.size(); i++) {
AxisChart categoria = axes.get(i);
addAxis(categoria.getName());
for (int j = 0; j < categoria.configSerieList.size(); j++) {
SimpleSeriesConfiguration cs = categoria.configSerieList.get(j);
addSeries(categoria.getName(), cs);
}
}
chart = new JFreeChart("", new Font("SansSerif", Font.BOLD, 16), plot, false);
chart.setBackgroundPaint(scene2awtColor(javafx.scene.paint.Color.web(strBackgroundColor)));
chartPanel = new ChartPanel(chart);
chartPanel.setBorder(
BorderFactory.createCompoundBorder(
BorderFactory.createEmptyBorder(4, 4, 4, 4),
BorderFactory.createLineBorder(
scene2awtColor(javafx.scene.paint.Color.web(strBackgroundColor)))));
chartPanel.getInputMap().put(KeyStroke.getKeyStroke("ESCAPE"), "escape");
chartPanel
.getActionMap()
.put(
"escape",
new AbstractAction() {
@Override
public void actionPerformed(java.awt.event.ActionEvent e) {
for (int i = 0; i < plot.getDatasetCount(); i++) {
XYDataset test = plot.getDataset(i);
XYItemRenderer r = plot.getRenderer(i);
r.removeAnnotations();
}
}
});
chartPanel.addChartMouseListener(
cml =
new ChartMouseListener() {
@Override
public void chartMouseClicked(ChartMouseEvent event) {}
@Override
public void chartMouseMoved(ChartMouseEvent event) {
try {
XYItemEntity xyitem = (XYItemEntity) event.getEntity(); // get clicked entity
XYDataset dataset = (XYDataset) xyitem.getDataset(); // get data set
double x = dataset.getXValue(xyitem.getSeriesIndex(), xyitem.getItem());
double y = dataset.getYValue(xyitem.getSeriesIndex(), xyitem.getItem());
final XYPlot plot = chart.getXYPlot();
for (int i = 0; i < plot.getDatasetCount(); i++) {
XYDataset test = plot.getDataset(i);
XYItemRenderer r = plot.getRenderer(i);
r.removeAnnotations();
if (test == dataset) {
NumberAxis ejeOrdenada = AxesList.get(i);
double y_max = ejeOrdenada.getUpperBound();
double y_min = ejeOrdenada.getLowerBound();
double x_max = abcissaAxis.getUpperBound();
double x_min = abcissaAxis.getLowerBound();
double angulo;
if (y > (y_max + y_min) / 2 && x > (x_max + x_min) / 2) {
angulo = 3.0 * Math.PI / 4.0;
} else if (y > (y_max + y_min) / 2 && x < (x_max + x_min) / 2) {
angulo = 1.0 * Math.PI / 4.0;
} else if (y < (y_max + y_min) / 2 && x < (x_max + x_min) / 2) {
angulo = 7.0 * Math.PI / 4.0;
} else {
angulo = 5.0 * Math.PI / 4.0;
}
CircleDrawer cd =
new CircleDrawer(
(Color) r.getSeriesPaint(xyitem.getSeriesIndex()),
new BasicStroke(2.0f),
null);
// XYAnnotation bestBid = new
// XYDrawableAnnotation(dataset.getXValue(xyitem.getSeriesIndex(),
// xyitem.getItem()), dataset.getYValue(xyitem.getSeriesIndex(),
// xyitem.getItem()), 11, 11, cd);
String txt =
"X:" + abcissaFormat.format(x) + ", Y:" + ordinateFormat.format(y);
XYPointerAnnotation anotacion =
new XYPointerAnnotation(
txt,
dataset.getXValue(xyitem.getSeriesIndex(), xyitem.getItem()),
dataset.getYValue(xyitem.getSeriesIndex(), xyitem.getItem()),
angulo);
anotacion.setTipRadius(10.0);
anotacion.setBaseRadius(35.0);
anotacion.setFont(new Font("SansSerif", Font.PLAIN, 10));
if (Long.parseLong((strChartBackgroundColor.replace("#", "")), 16)
> 0xffffff / 2) {
anotacion.setPaint(Color.black);
anotacion.setArrowPaint(Color.black);
} else {
anotacion.setPaint(Color.white);
anotacion.setArrowPaint(Color.white);
}
// bestBid.setPaint((Color) r.getSeriesPaint(xyitem.getSeriesIndex()));
r.addAnnotation(anotacion);
}
}
// LabelValorVariable.setSize(LabelValorVariable.getPreferredSize());
} catch (NullPointerException | ClassCastException ex) {
}
}
});
chartPanel.setPopupMenu(null);
chartPanel.setBackground(scene2awtColor(javafx.scene.paint.Color.web(strBackgroundColor)));
SwingNode sn = new SwingNode();
sn.setContent(chartPanel);
chartFrame = new VBox();
chartFrame.getChildren().addAll(sn, legendFrame);
VBox.setVgrow(sn, Priority.ALWAYS);
VBox.setVgrow(legendFrame, Priority.NEVER);
chartFrame
.getStylesheets()
.addAll(SwingChart.class.getResource("overlay-chart.css").toExternalForm());
legendFrame.setStyle("marco: " + strBackgroundColor + ";-fx-background-color: marco;");
MenuItem mi;
mi = new MenuItem("Print");
mi.setOnAction(
(ActionEvent t) -> {
print(chartFrame);
});
contextMenuList.add(mi);
sn.setOnMouseClicked(
(MouseEvent t) -> {
if (menu != null) {
menu.hide();
}
if (t.getClickCount() == 2) {
backgroundEdition();
}
});
mi = new MenuItem("Copy to clipboard");
mi.setOnAction(
(ActionEvent t) -> {
copyClipboard(chartFrame);
});
contextMenuList.add(mi);
mi = new MenuItem("Export values");
mi.setOnAction(
(ActionEvent t) -> {
FileChooser fileChooser = new FileChooser();
fileChooser.setTitle("Export to file");
fileChooser
.getExtensionFilters()
.addAll(new FileChooser.ExtensionFilter("Comma Separated Values", "*.csv"));
Window w = null;
try {
w = parent.getScene().getWindow();
} catch (NullPointerException e) {
}
File file = fileChooser.showSaveDialog(w);
if (file != null) {
export(file);
}
});
contextMenuList.add(mi);
chartFrame.setOnContextMenuRequested(
(ContextMenuEvent t) -> {
if (menu != null) {
menu.hide();
}
menu = new ContextMenu();
menu.getItems().addAll(contextMenuList);
menu.show(chartFrame, t.getScreenX(), t.getScreenY());
});
}
/**
* Returns a sequence plot as a ChartPanel.
*
* @param aProteinSequencePanelParent the protein sequence panel parent
* @param sparklineDataset the dataset
* @param proteinAnnotations the protein annotations
* @param addReferenceLine if true, a reference line is added
* @param allowZooming if true, the user can zoom in the created plot/chart
* @return a sequence plot
*/
public ChartPanel getSequencePlot(
ProteinSequencePanelParent aProteinSequencePanelParent,
JSparklinesDataset sparklineDataset,
HashMap<Integer, ArrayList<ResidueAnnotation>> proteinAnnotations,
boolean addReferenceLine,
boolean allowZooming) {
this.proteinSequencePanelParent = aProteinSequencePanelParent;
DefaultCategoryDataset barChartDataset = new DefaultCategoryDataset();
StackedBarRenderer renderer = new StackedBarRenderer();
renderer.setShadowVisible(false);
CategoryToolTipGenerator myTooltips = new ProteinAnnotations(proteinAnnotations);
// add the data
for (int i = 0; i < sparklineDataset.getData().size(); i++) {
JSparklinesDataSeries sparklineDataSeries = sparklineDataset.getData().get(i);
for (int j = 0; j < sparklineDataSeries.getData().size(); j++) {
barChartDataset.addValue(sparklineDataSeries.getData().get(j), "" + i, "" + j);
renderer.setSeriesPaint(i, sparklineDataSeries.getSeriesColor());
renderer.setSeriesToolTipGenerator(i, myTooltips);
}
}
// create the chart
JFreeChart chart =
ChartFactory.createStackedBarChart(
null, null, null, barChartDataset, PlotOrientation.HORIZONTAL, false, false, false);
// fine tune the chart properites
CategoryPlot plot = chart.getCategoryPlot();
// remove space before/after the domain axis
plot.getDomainAxis().setUpperMargin(0);
plot.getDomainAxis().setLowerMargin(0);
// remove space before/after the range axis
plot.getRangeAxis().setUpperMargin(0);
plot.getRangeAxis().setLowerMargin(0);
renderer.setRenderAsPercentages(true);
renderer.setBaseToolTipGenerator(new IntervalCategoryToolTipGenerator());
// add the dataset to the plot
plot.setDataset(barChartDataset);
// hide unwanted chart details
plot.getRangeAxis().setVisible(false);
plot.getDomainAxis().setVisible(false);
plot.setRangeGridlinesVisible(false);
plot.setDomainGridlinesVisible(false);
// add a reference line in the middle of the dataset
if (addReferenceLine) {
DefaultCategoryDataset referenceLineDataset = new DefaultCategoryDataset();
referenceLineDataset.addValue(1.0, "A", "B");
plot.setDataset(1, referenceLineDataset);
LayeredBarRenderer referenceLineRenderer = new LayeredBarRenderer();
referenceLineRenderer.setSeriesBarWidth(0, referenceLineWidth);
referenceLineRenderer.setSeriesFillPaint(0, referenceLineColor);
referenceLineRenderer.setSeriesPaint(0, referenceLineColor);
plot.setRenderer(1, referenceLineRenderer);
}
// set up the chart renderer
plot.setRenderer(0, renderer);
// hide the outline
chart.getPlot().setOutlineVisible(false);
// make sure the background is the same as the panel
chart.getPlot().setBackgroundPaint(backgroundColor);
chart.setBackgroundPaint(backgroundColor);
final HashMap<Integer, ArrayList<ResidueAnnotation>> blockTooltips = proteinAnnotations;
// create the chart panel
ChartPanel chartPanel = new ChartPanel(chart);
chartPanel.addChartMouseListener(
new ChartMouseListener() {
@Override
public void chartMouseClicked(ChartMouseEvent cme) {
if (cme.getEntity() != null && cme.getTrigger().getButton() == MouseEvent.BUTTON1) {
((CategoryItemEntity) cme.getEntity()).getDataset();
Integer blockNumber =
new Integer((String) ((CategoryItemEntity) cme.getEntity()).getRowKey());
ArrayList<ResidueAnnotation> annotation = blockTooltips.get(blockNumber);
if (annotation != null) {
proteinSequencePanelParent.annotationClicked(annotation, cme);
}
}
}
@Override
public void chartMouseMoved(ChartMouseEvent cme) {
cme.getTrigger()
.getComponent()
.setCursor(new java.awt.Cursor(java.awt.Cursor.DEFAULT_CURSOR));
if (cme.getEntity() != null && cme.getEntity() instanceof CategoryItemEntity) {
((CategoryItemEntity) cme.getEntity()).getDataset();
Integer blockNumber =
new Integer((String) ((CategoryItemEntity) cme.getEntity()).getRowKey());
ArrayList<ResidueAnnotation> annotation = blockTooltips.get(blockNumber);
if (annotation != null && !annotation.isEmpty()) {
if (blockTooltips.get(blockNumber).get(0).isClickable()) {
cme.getTrigger()
.getComponent()
.setCursor(new java.awt.Cursor(java.awt.Cursor.HAND_CURSOR));
}
}
}
}
});
if (!allowZooming) {
chartPanel.setPopupMenu(null);
chartPanel.setRangeZoomable(false);
}
chartPanel.setBackground(Color.WHITE);
return chartPanel;
}
