public static MD5Hash createKeyHash(File file, Metadata metadata) throws IOException {
String extension = Util.getExtension(file.getName());
if ("eml".equalsIgnoreCase(extension)) {
assert (metadata != null);
String hashNames =
EmailProperties.getInstance().getProperty(EmailProperties.EMAIL_HASH_NAMES);
String[] hashNamesArr = hashNames.split(",");
StringBuilder data = new StringBuilder();
for (String hashName : hashNamesArr) {
String value = metadata.get(hashName);
if (value != null) {
data.append(value);
data.append(" ");
}
}
return MD5Hash.digest(data.toString());
} else {
MD5Hash key;
try ( // use MD5 of the input file as Hadoop key
FileInputStream fileInputStream = new FileInputStream(file)) {
key = MD5Hash.digest(fileInputStream);
}
return key;
}
}
private void installFreeEed() throws Exception {
String url = Settings.getSettings().getDownloadLink();
logger.info("Installing FreeEed software from " + url);
String cmd =
"rm FreeEed.zip; "
+ "wget "
+ url
+ " -O FreeEed.zip --no-check-certificate; "
+ "rm -fr FreeEed; "
+ "unzip -P 4ushH7XZT1 FreeEed.zip";
SSHAgent sshAgent = new SSHAgent();
sshAgent.setUser(ParameterProcessing.CLUSTER_USER_NAME);
sshAgent.setKey(ParameterProcessing.PEM_CERTIFICATE_NAME);
sshAgent.setHost(cluster.getJobTracker().getDnsName());
sshAgent.executeCommand(cmd);
logger.info("Successfully installed FreeEed");
// copy the settings to jobtracker
Server server = cluster.getJobTracker();
sshAgent.setHost(server.getDnsName());
Settings cloneForS3 = Settings.getSettings().cloneForS3();
String settingsFileToUse = "settings.properties.s3";
Util.writeTextFile(settingsFileToUse, cloneForS3.toString());
logger.info("Copying settings file: {}", settingsFileToUse);
// TODO change passing the settings to the cloud
// sshAgent.scpTo(settingsFileToUse, "FreeEed/" + ParameterProcessing.DEFAULT_SETTINGS);
}
private void verifyOperation() throws Exception {
hadoopReady = false;
String cmd;
String[] output;
SSHAgent sshAgent = new SSHAgent();
sshAgent.setUser(ParameterProcessing.CLUSTER_USER_NAME);
sshAgent.setKey(ParameterProcessing.PEM_CERTIFICATE_NAME);
sshAgent.setHost(cluster.getJobTracker().getDnsName());
logger.info("Cluster testing and verification started");
cmd = "hadoop fs -mkdir /test";
sshAgent.executeCommand(cmd);
cmd = "hadoop fs -copyFromLocal *.xml /test/";
sshAgent.executeCommand(cmd);
cmd =
"hadoop jar /usr/lib/hadoop/hadoop-0.20.2-cdh*-examples.jar grep /test /test-output 'dfs[a-z.]+'";
output = sshAgent.executeCommand(cmd);
logger.info(Util.arrayToString(output));
cmd = "hadoop fs -ls /test-output";
output = sshAgent.executeCommand(cmd);
logger.info(Util.arrayToString(output));
logger.info("Cluster testing and verification is complete");
boolean success = false;
for (String line : output) {
if (line.contains("_SUCCESS")) {
success = true;
cluster.setReadyToUse(true);
break;
}
}
hadoopReady = success;
}
private void mergeLuceneIndex() throws IOException {
String luceneDir = Settings.getSettings().getLuceneIndexDir();
String hdfsLuceneDir =
"/" + luceneDir + File.separator + Project.getProject().getProjectCode() + File.separator;
String localLuceneTempDir = luceneDir + File.separator + "tmp" + File.separator;
File localLuceneTempDirFile = new File(localLuceneTempDir);
if (localLuceneTempDirFile.exists()) {
Util.deleteDirectory(localLuceneTempDirFile);
}
localLuceneTempDirFile.mkdir();
// copy all zip lucene indexes, created by maps to local hd
String cmd = "hadoop fs -copyToLocal " + hdfsLuceneDir + "* " + localLuceneTempDir;
OsUtil.runCommand(cmd);
// remove the map indexes as they are now copied to local
String removeOldZips = "hadoop fs -rm " + hdfsLuceneDir + "*";
OsUtil.runCommand(removeOldZips);
logger.trace("Lucene index files collected to: {}", localLuceneTempDirFile.getAbsolutePath());
String[] zipFilesArr = localLuceneTempDirFile.list();
for (String indexZipFileStr : zipFilesArr) {
String indexZipFileName = localLuceneTempDir + indexZipFileStr;
String unzipToDir = localLuceneTempDir + indexZipFileStr.replace(".zip", "");
ZipUtil.unzipFile(indexZipFileName, unzipToDir);
File indexDir = new File(unzipToDir);
FSDirectory fsDir = FSDirectory.open(indexDir);
luceneIndex.addToIndex(fsDir);
}
// TODO check if we need to push the index to S3 or somewhere else
luceneIndex.destroy();
}
private void setupAndStartCluster() throws Exception {
// form config files
String masters = cluster.getMaster().getPrivateDnsName() + "\n";
Files.write(masters.getBytes(), new File(mastersFile));
List<String> slavesList = new ArrayList<String>();
for (int i = 0; i < cluster.size(); ++i) {
Server server = cluster.get(i);
if (server.isTaskTracker()) {
slavesList.add(server.getPrivateDnsName());
}
}
String[] slaves = (String[]) slavesList.toArray(new String[0]);
Files.write(Util.arrayToString(slaves).getBytes(), new File(slavesFile));
String coreSite = Util.readTextFile("config/" + coreSiteFile);
coreSite = coreSite.replaceFirst("localhost", cluster.getMaster().getPrivateDnsName());
Files.write(coreSite.getBytes(), new File(coreSiteFile));
String mapredSite = Util.readTextFile("config/" + mapredSiteFile);
mapredSite = mapredSite.replaceFirst("localhost", cluster.getJobTracker().getPrivateDnsName());
Files.write(mapredSite.getBytes(), new File(mapredSiteFile));
String cmd;
String[] output;
// push config files to the cluster
logger.info("Configuring the Hadoop cluster");
ClusterCommand clusterCommand = new ClusterCommand(cluster);
clusterCommand.runScpWaitForAll(mastersFile, mastersFile);
clusterCommand.runScpWaitForAll(slavesFile, slavesFile);
clusterCommand.runScpWaitForAll("config/" + hdfsSiteFile, hdfsSiteFile);
clusterCommand.runScpWaitForAll(coreSiteFile, coreSiteFile);
clusterCommand.runScpWaitForAll(mapredSiteFile, mapredSiteFile);
// copy from home on remote to the config area
clusterCommand.runCommandWaitForAll("sudo cp " + mastersFile + " /etc/hadoop/conf/");
clusterCommand.runCommandWaitForAll("sudo cp " + slavesFile + " /etc/hadoop/conf/");
clusterCommand.runCommandWaitForAll("sudo cp " + hdfsSiteFile + " /etc/hadoop/conf/");
clusterCommand.runCommandWaitForAll("sudo cp " + coreSiteFile + " /etc/hadoop/conf/");
clusterCommand.runCommandWaitForAll("sudo cp " + mapredSiteFile + " /etc/hadoop/conf/");
// create /mnt/tmp for everyone to use
clusterCommand.runCommandWaitForAll("sudo rm -fr /mnt/tmp");
clusterCommand.runCommandWaitForAll("sudo mkdir /mnt/tmp");
clusterCommand.runCommandWaitForAll("sudo chmod 777 /mnt/tmp");
// create /mnt/tmp for hadoop tmp dir
clusterCommand.runCommandWaitForAll("sudo mkdir /mnt/tmp/hadoop");
clusterCommand.runCommandWaitForAll("sudo chmod 777 /mnt/tmp/hadoop");
logger.info("Hadoop cluster configured, starting the services");
// shut down all services
// clean up dfs on slaves
hadoopReady = false;
cmd = "for service in /etc/init.d/hadoop-0.20-*; do sudo $service stop; done";
clusterCommand.runCommandWaitForAll(cmd);
cmd = "sudo rm -fr /var/lib/hadoop-0.20/cache/*";
clusterCommand.runCommandWaitForAll(cmd);
SSHAgent sshAgent = new SSHAgent();
sshAgent.setUser(ParameterProcessing.CLUSTER_USER_NAME);
sshAgent.setKey(ParameterProcessing.PEM_CERTIFICATE_NAME);
sshAgent.setHost(cluster.getMaster().getDnsName());
cmd = "sudo -u hdfs hadoop namenode -format";
sshAgent.executeCommand(cmd);
cmd = "sudo service hadoop-0.20-namenode start";
output = sshAgent.executeCommand(cmd);
logger.info(Util.arrayToString(output));
// start all hdfs slaves
clusterCommand = new ClusterCommand(cluster.getDataNodes());
cmd = "sudo service hadoop-0.20-datanode start";
clusterCommand.runCommandWaitForAll(cmd);
// start all tasktrackers
clusterCommand = new ClusterCommand(cluster.getTaskTrackers());
cmd = "sudo service hadoop-0.20-tasktracker start";
clusterCommand.runCommandWaitForAll(cmd);
sshAgent.setHost(cluster.getJobTracker().getDnsName());
cmd = "sudo service hadoop-0.20-jobtracker start";
output = sshAgent.executeCommand(cmd);
logger.info(Util.arrayToString(output));
logger.info("Cluster configuration and startup is complete");
cmd = "sudo rm /usr/lib/hadoop/lib/jets3t*.jar";
clusterCommand = new ClusterCommand(cluster);
clusterCommand.runCommandWaitForAll(cmd);
// install a fresh version of FreeEed
installFreeEed();
// run a distributed grep app
verifyOperation();
if (callingUI != null) {
callingUI.refreshStatus();
}
}
