private SpatialBinCollection doSpatialBinning(BinningProductFilter productFilter)
throws IOException {
SpatialBinCollector spatialBinCollector =
new GeneralSpatialBinCollector(binningContext.getPlanetaryGrid().getNumBins());
final SpatialBinner spatialBinner = new SpatialBinner(binningContext, spatialBinCollector);
if (sourceProducts != null) {
for (Product sourceProduct : sourceProducts) {
if (productFilter.accept(sourceProduct)) {
processSource(sourceProduct, spatialBinner);
} else {
getLogger().warning("Filtered out product '" + sourceProduct.getFileLocation() + "'");
getLogger().warning(" reason: " + productFilter.getReason());
}
}
}
if (sourceProductPaths != null) {
SortedSet<File> fileSet = new TreeSet<>();
for (String filePattern : sourceProductPaths) {
WildcardMatcher.glob(filePattern, fileSet);
}
if (fileSet.isEmpty()) {
getLogger().warning("The given source file patterns did not match any files");
}
for (File file : fileSet) {
Product sourceProduct = null;
try {
if (sourceProductFormat != null) {
sourceProduct = ProductIO.readProduct(file, sourceProductFormat);
} else {
sourceProduct = ProductIO.readProduct(file);
}
} catch (Exception e) {
String msgPattern = "Failed to read file '%s'. %s: %s";
getLogger()
.severe(
String.format(msgPattern, file, e.getClass().getSimpleName(), e.getMessage()));
}
if (sourceProduct != null) {
try {
if (productFilter.accept(sourceProduct)) {
processSource(sourceProduct, spatialBinner);
} else {
getLogger().warning("Filtered out product '" + sourceProduct.getFileLocation() + "'");
getLogger().warning(" reason: " + productFilter.getReason());
}
} finally {
sourceProduct.dispose();
}
} else {
String msgPattern = "Failed to read file '%s' (not a data product or reader missing)";
getLogger().severe(String.format(msgPattern, file));
}
}
}
spatialBinCollector.consumingCompleted();
return spatialBinCollector.getSpatialBinCollection();
}
private void writeOutput(
List<TemporalBin> temporalBins, ProductData.UTC startTime, ProductData.UTC stopTime)
throws Exception {
StopWatch stopWatch = new StopWatch();
stopWatch.start();
initMetadataProperties();
if (outputBinnedData) {
try {
writeNetCDFBinFile(temporalBins, startTime, stopTime);
} catch (Exception e) {
getLogger()
.log(Level.SEVERE, String.format("Failed to write binned data: %s", e.getMessage()), e);
}
}
if (outputTargetProduct) {
getLogger()
.info(String.format("Writing mapped product '%s'...", formatterConfig.getOutputFile()));
final MetadataElement processingGraphMetadata = getProcessingGraphMetadata();
Formatter.format(
binningContext.getPlanetaryGrid(),
getTemporalBinSource(temporalBins),
binningContext.getBinManager().getResultFeatureNames(),
formatterConfig,
region,
startTime,
stopTime,
processingGraphMetadata);
stopWatch.stop();
String msgPattern = "Writing mapped product '%s' done, took %s";
getLogger().info(String.format(msgPattern, formatterConfig.getOutputFile(), stopWatch));
if (outputType.equalsIgnoreCase("Product")) {
final File writtenProductFile = new File(outputFile);
String format = Formatter.getOutputFormat(formatterConfig, writtenProductFile);
writtenProduct = ProductIO.readProduct(writtenProductFile, format);
this.targetProduct = copyProduct(writtenProduct);
} else {
this.targetProduct = new Product("Dummy", "t", 10, 10);
}
} else {
this.targetProduct = new Product("Dummy", "t", 10, 10);
}
}