Esempio n. 1
0
  @Override
  public void setDataDomain(ATableBasedDataDomain dataDomain) {
    this.dataDomain = dataDomain;

    // Tree<ClusterNode> tree =
    // dataDomain.getTable().getDimensionData(dimensionVAType)
    // .getDimensionTree();
    // // Tree<ClusterNode> tree = table.getClusteredTreeGenes();
    // if (tree != null) {
    // ArrayList<EPDDrawingStrategyType> alColorModes = new
    // ArrayList<EPDDrawingStrategyType>();
    // alColorModes.add(EPDDrawingStrategyType.EXPRESSION_COLOR);
    // alColorModes.add(EPDDrawingStrategyType.RAINBOW_COLOR);
    //
    // // initHierarchy(tree, EIDType.CLUSTER_NUMBER,
    // // new GeneClusterDataEventManager(this), alColorModes);
    // initHierarchy(tree,
    // dataDomain.getTable().getDimensionData(dimensionVAType)
    // .getDimensionTreeRoot(), new ExperimentClusterDataEventManager(this),
    // alColorModes);
    // }

    Tree<ClusterNode> tree = tablePerspective.getRecordPerspective().getTree();
    // Tree<ClusterNode> tree = table.getClusteredTreeGenes();
    if (tree != null) {
      ArrayList<EPDDrawingStrategyType> alColorModes = new ArrayList<EPDDrawingStrategyType>();
      alColorModes.add(EPDDrawingStrategyType.EXPRESSION_COLOR);
      alColorModes.add(EPDDrawingStrategyType.RAINBOW_COLOR);

      // initHierarchy(tree, EIDType.CLUSTER_NUMBER,
      // new GeneClusterDataEventManager(this), alColorModes);
      initHierarchy(tree, tree.getRoot(), new GeneClusterDataEventManager(this), alColorModes);
    }

    // Tree<ClusterNode> tree =
    // dataDomain.getTable().getContentData(recordVAType)
    // .getContentTree();
    // if (tree != null) {
    // // initHierarchy(tree);
    // } else {
    // // initTestHierarchy();
    // // }
    // partialDiscTree.setLeafIDType(tree.getLeaveIDType());
    // partialDiscTree.setNodeIDType(tree.getNodeIDType());

  }
Esempio n. 2
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  /**
   * Recursively builds the partial disc tree according to a hierarchy data tree. Note that the root
   * element of the partial disc tree has to be set separately.
   *
   * @param tree Tree of cluster nodes which is used to build the partial disc tree.
   * @param hierarchyElement Current parent hierarchy element whose children are used for the
   *     creation of the children of partialDisc. Initially this variable should be the root element
   *     of the hierarchy element tree.
   * @param partialDisc Current parent partial disc whose children will be created. Initially this
   *     variable should be the root element of the partial disc tree.
   */
  private <E extends AHierarchyElement<E>> void buildTree(
      Tree<E> tree, E hierarchyElement, PartialDisc partialDisc) {

    ArrayList<E> alChildNodes = tree.getChildren(hierarchyElement);
    ArrayList<PartialDisc> alChildDiscs = new ArrayList<PartialDisc>();

    if (alChildNodes != null) {
      for (E heChild : alChildNodes) {
        PartialDisc pdCurrentChildDisc =
            new PartialDisc(
                partialDiscTree, heChild, drawingStrategyManager.getDefaultDrawingStrategy());
        try {
          alChildDiscs.add(pdCurrentChildDisc);
          partialDiscTree.addChild(partialDisc, pdCurrentChildDisc);
          hashPartialDiscs.put(heChild.getID(), pdCurrentChildDisc);
          // selectionManager.initialAdd(heChild.getID());
          buildTree(tree, heChild, pdCurrentChildDisc);
        } catch (Exception e) {
          e.printStackTrace();
        }
      }
    }
  }
Esempio n. 3
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  /**
   * Initializes a new hierarchy of partial discs according to a tree of cluster nodes and other
   * parameters.
   *
   * @param <E> Concrete Type of IHierarchyData
   * @param tree Tree of hierarchy data objects which is used to build the partial disc tree.
   * @param idType IDType of the hierarchy data objects.
   * @param dataEventManager Concrete DataEventManager that is responsible for handling and
   *     triggering data specific events.
   * @param alColorModes List of drawing strategies that shall be used as color modes.
   */
  public <E extends AHierarchyElement<E>> void initHierarchy(
      Tree<E> tree,
      E heRoot,
      ADataEventManager dataEventManager,
      ArrayList<EPDDrawingStrategyType> alColorModes) {

    hashPartialDiscs.clear();
    selectionManager = new SelectionManager(tree.getNodeIDType());
    partialDiscTree = new Tree<PartialDisc>();
    navigationHistory.reset();
    drawingController.setDrawingState(EDrawingStateType.DRAWING_STATE_FULL_HIERARCHY);
    LabelManager.get().clearLabels();
    drawingStrategyManager.init(pickingManager, uniqueID, alColorModes);

    PartialDisc pdRoot =
        new PartialDisc(
            partialDiscTree, heRoot, drawingStrategyManager.getDefaultDrawingStrategy());
    partialDiscTree.setRootNode(pdRoot);
    partialDiscTree.setLeafIDType(tree.getLeaveIDType());
    partialDiscTree.setNodeIDType(tree.getNodeIDType());
    hashPartialDiscs.put(heRoot.getID(), pdRoot);
    // selectionManager.initialAdd(heRoot.getID());
    buildTree(tree, heRoot, pdRoot);
    pdRoot.calculateLargestChildren();
    iMaxDisplayedHierarchyDepth = DISP_HIER_DEPTH_DEFAULT;

    this.dataEventManager = dataEventManager;
    this.dataEventManager.registerEventListeners();

    pdCurrentRootElement = pdRoot;
    pdCurrentSelectedElement = pdRoot;
    pdRealRootElement = pdRoot;

    navigationHistory.addNewHistoryEntry(
        drawingController.getCurrentDrawingState(),
        pdCurrentRootElement,
        pdCurrentSelectedElement,
        iMaxDisplayedHierarchyDepth);

    selectionManager.addToType(SelectionType.SELECTION, pdCurrentRootElement.getElementID());

    controlBox = new Rectangle(0, 0, 0.3f, 0.2f);
    upwardNavigationSlider =
        new OneWaySlider(
            new Vec2f(controlBox.getMinX() + 0.1f, controlBox.getMinY() + 0.1f),
            0.2f,
            1f,
            pdRealRootElement.getHierarchyLevel(),
            1,
            0,
            pdRealRootElement.getDepth() - 1);
    upwardNavigationSlider.setMinSize(80);
  }
Esempio n. 4
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 IDType getNodeIDType() {
   return partialDiscTree.getNodeIDType();
 }