@Override
public void setDataDomain(ATableBasedDataDomain dataDomain) {
this.dataDomain = dataDomain;
// Tree<ClusterNode> tree =
// dataDomain.getTable().getDimensionData(dimensionVAType)
// .getDimensionTree();
// // Tree<ClusterNode> tree = table.getClusteredTreeGenes();
// if (tree != null) {
// ArrayList<EPDDrawingStrategyType> alColorModes = new
// ArrayList<EPDDrawingStrategyType>();
// alColorModes.add(EPDDrawingStrategyType.EXPRESSION_COLOR);
// alColorModes.add(EPDDrawingStrategyType.RAINBOW_COLOR);
//
// // initHierarchy(tree, EIDType.CLUSTER_NUMBER,
// // new GeneClusterDataEventManager(this), alColorModes);
// initHierarchy(tree,
// dataDomain.getTable().getDimensionData(dimensionVAType)
// .getDimensionTreeRoot(), new ExperimentClusterDataEventManager(this),
// alColorModes);
// }
Tree<ClusterNode> tree = tablePerspective.getRecordPerspective().getTree();
// Tree<ClusterNode> tree = table.getClusteredTreeGenes();
if (tree != null) {
ArrayList<EPDDrawingStrategyType> alColorModes = new ArrayList<EPDDrawingStrategyType>();
alColorModes.add(EPDDrawingStrategyType.EXPRESSION_COLOR);
alColorModes.add(EPDDrawingStrategyType.RAINBOW_COLOR);
// initHierarchy(tree, EIDType.CLUSTER_NUMBER,
// new GeneClusterDataEventManager(this), alColorModes);
initHierarchy(tree, tree.getRoot(), new GeneClusterDataEventManager(this), alColorModes);
}
// Tree<ClusterNode> tree =
// dataDomain.getTable().getContentData(recordVAType)
// .getContentTree();
// if (tree != null) {
// // initHierarchy(tree);
// } else {
// // initTestHierarchy();
// // }
// partialDiscTree.setLeafIDType(tree.getLeaveIDType());
// partialDiscTree.setNodeIDType(tree.getNodeIDType());
}
/**
* Recursively builds the partial disc tree according to a hierarchy data tree. Note that the root
* element of the partial disc tree has to be set separately.
*
* @param tree Tree of cluster nodes which is used to build the partial disc tree.
* @param hierarchyElement Current parent hierarchy element whose children are used for the
* creation of the children of partialDisc. Initially this variable should be the root element
* of the hierarchy element tree.
* @param partialDisc Current parent partial disc whose children will be created. Initially this
* variable should be the root element of the partial disc tree.
*/
private <E extends AHierarchyElement<E>> void buildTree(
Tree<E> tree, E hierarchyElement, PartialDisc partialDisc) {
ArrayList<E> alChildNodes = tree.getChildren(hierarchyElement);
ArrayList<PartialDisc> alChildDiscs = new ArrayList<PartialDisc>();
if (alChildNodes != null) {
for (E heChild : alChildNodes) {
PartialDisc pdCurrentChildDisc =
new PartialDisc(
partialDiscTree, heChild, drawingStrategyManager.getDefaultDrawingStrategy());
try {
alChildDiscs.add(pdCurrentChildDisc);
partialDiscTree.addChild(partialDisc, pdCurrentChildDisc);
hashPartialDiscs.put(heChild.getID(), pdCurrentChildDisc);
// selectionManager.initialAdd(heChild.getID());
buildTree(tree, heChild, pdCurrentChildDisc);
} catch (Exception e) {
e.printStackTrace();
}
}
}
}
/**
* Initializes a new hierarchy of partial discs according to a tree of cluster nodes and other
* parameters.
*
* @param <E> Concrete Type of IHierarchyData
* @param tree Tree of hierarchy data objects which is used to build the partial disc tree.
* @param idType IDType of the hierarchy data objects.
* @param dataEventManager Concrete DataEventManager that is responsible for handling and
* triggering data specific events.
* @param alColorModes List of drawing strategies that shall be used as color modes.
*/
public <E extends AHierarchyElement<E>> void initHierarchy(
Tree<E> tree,
E heRoot,
ADataEventManager dataEventManager,
ArrayList<EPDDrawingStrategyType> alColorModes) {
hashPartialDiscs.clear();
selectionManager = new SelectionManager(tree.getNodeIDType());
partialDiscTree = new Tree<PartialDisc>();
navigationHistory.reset();
drawingController.setDrawingState(EDrawingStateType.DRAWING_STATE_FULL_HIERARCHY);
LabelManager.get().clearLabels();
drawingStrategyManager.init(pickingManager, uniqueID, alColorModes);
PartialDisc pdRoot =
new PartialDisc(
partialDiscTree, heRoot, drawingStrategyManager.getDefaultDrawingStrategy());
partialDiscTree.setRootNode(pdRoot);
partialDiscTree.setLeafIDType(tree.getLeaveIDType());
partialDiscTree.setNodeIDType(tree.getNodeIDType());
hashPartialDiscs.put(heRoot.getID(), pdRoot);
// selectionManager.initialAdd(heRoot.getID());
buildTree(tree, heRoot, pdRoot);
pdRoot.calculateLargestChildren();
iMaxDisplayedHierarchyDepth = DISP_HIER_DEPTH_DEFAULT;
this.dataEventManager = dataEventManager;
this.dataEventManager.registerEventListeners();
pdCurrentRootElement = pdRoot;
pdCurrentSelectedElement = pdRoot;
pdRealRootElement = pdRoot;
navigationHistory.addNewHistoryEntry(
drawingController.getCurrentDrawingState(),
pdCurrentRootElement,
pdCurrentSelectedElement,
iMaxDisplayedHierarchyDepth);
selectionManager.addToType(SelectionType.SELECTION, pdCurrentRootElement.getElementID());
controlBox = new Rectangle(0, 0, 0.3f, 0.2f);
upwardNavigationSlider =
new OneWaySlider(
new Vec2f(controlBox.getMinX() + 0.1f, controlBox.getMinY() + 0.1f),
0.2f,
1f,
pdRealRootElement.getHierarchyLevel(),
1,
0,
pdRealRootElement.getDepth() - 1);
upwardNavigationSlider.setMinSize(80);
}
IDType getNodeIDType() {
return partialDiscTree.getNodeIDType();
}