public void onTraversalDone(Integer includedSites) {
logger.info("Sites included in beagle likelihoods file : " + includedSites);
logger.info(
String.format(
"Certain false positive found from recalibration curve : %d (%.2f%%)",
certainFPs, (100.0 * certainFPs) / (Math.max(certainFPs + includedSites, 1))));
}
/**
* Creates a new LRU cache.
*
* @param cacheSize the maximum number of entries that will be kept in this cache.
*/
public LRUCache(int cacheSize) {
this.cacheSize = cacheSize;
int hashTableCapacity = (int) Math.ceil(cacheSize / hashTableLoadFactor) + 1;
map =
new LinkedHashMap<K, V>(hashTableCapacity, hashTableLoadFactor, true) {
// (an anonymous inner class)
private static final long serialVersionUID = 1;
@Override
protected boolean removeEldestEntry(Map.Entry<K, V> eldest) {
return size() > LRUCache.this.cacheSize;
}
};
}