private CIJobStatus deleteCI(CIJob job, List<String> builds) throws PhrescoException {
S_LOGGER.debug("Entering Method CIManagerImpl.deleteCI(CIJob job)");
S_LOGGER.debug("Job name " + job.getName());
cli = getCLI(job);
String deleteType = null;
List<String> argList = new ArrayList<String>();
S_LOGGER.debug("job name " + job.getName());
S_LOGGER.debug("Builds " + builds);
if (CollectionUtils.isEmpty(builds)) { // delete job
S_LOGGER.debug("Job deletion started");
S_LOGGER.debug("Command " + FrameworkConstants.CI_JOB_DELETE_COMMAND);
deleteType = DELETE_TYPE_JOB;
argList.add(FrameworkConstants.CI_JOB_DELETE_COMMAND);
argList.add(job.getName());
} else { // delete Build
S_LOGGER.debug("Build deletion started");
deleteType = DELETE_TYPE_BUILD;
argList.add(FrameworkConstants.CI_BUILD_DELETE_COMMAND);
argList.add(job.getName());
StringBuilder result = new StringBuilder();
for (String string : builds) {
result.append(string);
result.append(",");
}
String buildNos = result.substring(0, result.length() - 1);
argList.add(buildNos);
S_LOGGER.debug("Command " + FrameworkConstants.CI_BUILD_DELETE_COMMAND);
S_LOGGER.debug("Build numbers " + buildNos);
}
try {
int status = cli.execute(argList);
String message = deleteType + " deletion started in jenkins";
if (status == FrameworkConstants.JOB_STATUS_NOTOK) {
deleteType = deleteType.substring(0, 1).toLowerCase() + deleteType.substring(1);
message = "Error while deleting " + deleteType + " in jenkins";
}
S_LOGGER.debug("Delete CI Status " + status);
S_LOGGER.debug("Delete CI Message " + message);
return new CIJobStatus(status, message);
} finally {
if (cli != null) {
try {
cli.close();
} catch (IOException e) {
if (debugEnabled) {
S_LOGGER.error(
"Entered into catch block of CIManagerImpl.deleteCI(CIJob job) "
+ e.getLocalizedMessage());
}
} catch (InterruptedException e) {
if (debugEnabled) {
S_LOGGER.error(
"Entered into catch block of CIManagerImpl.deleteCI(CIJob job) "
+ e.getLocalizedMessage());
}
}
}
}
}
private CIJobStatus buildJob(CIJob job) throws PhrescoException {
if (debugEnabled) {
S_LOGGER.debug("Entering Method CIManagerImpl.buildJob(CIJob job)");
}
cli = getCLI(job);
List<String> argList = new ArrayList<String>();
argList.add(FrameworkConstants.CI_BUILD_JOB_COMMAND);
argList.add(job.getName());
try {
int status = cli.execute(argList);
String message = FrameworkConstants.CI_BUILD_STARTED;
if (status == FrameworkConstants.JOB_STATUS_NOTOK) {
message = FrameworkConstants.CI_BUILD_STARTING_ERROR;
}
return new CIJobStatus(status, message);
} finally {
if (cli != null) {
try {
cli.close();
} catch (IOException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
} catch (InterruptedException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
}
}
}
}
public void updateJob(ApplicationInfo appInfo, CIJob job) throws PhrescoException {
if (debugEnabled) {
S_LOGGER.debug(
"Entering Method ProjectAdministratorImpl.updateJob(Project project, CIJob job)");
}
FileWriter writer = null;
try {
CIJobStatus jobStatus = configureJob(job, FrameworkConstants.CI_UPDATE_JOB_COMMAND);
if (jobStatus.getCode() == -1) {
throw new PhrescoException(jobStatus.getMessage());
}
if (debugEnabled) {
S_LOGGER.debug("getCustomModules() ProjectInfo = " + appInfo);
}
updateJsonJob(appInfo, job);
} catch (ClientHandlerException ex) {
if (debugEnabled) {
S_LOGGER.error(ex.getLocalizedMessage());
}
throw new PhrescoException(ex);
} finally {
if (writer != null) {
try {
writer.close();
} catch (IOException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
}
}
}
}
private void send(Message m) {
try {
moteIF.send(MoteIF.TOS_BCAST_ADDR, m);
} catch (IOException e) {
e.printStackTrace();
System.out.println("ERROR: Can't send message");
System.exit(1);
} catch (Exception e) {
e.printStackTrace();
}
}
private CIJob getJob(ApplicationInfo appInfo) throws PhrescoException {
Gson gson = new Gson();
try {
BufferedReader br = new BufferedReader(new FileReader(getCIJobPath(appInfo)));
CIJob job = gson.fromJson(br, CIJob.class);
br.close();
return job;
} catch (FileNotFoundException e) {
S_LOGGER.debug(e.getLocalizedMessage());
return null;
} catch (com.google.gson.JsonParseException e) {
S_LOGGER.debug("it is already adpted project !!!!! " + e.getLocalizedMessage());
return null;
} catch (IOException e) {
S_LOGGER.debug(e.getLocalizedMessage());
return null;
}
}
private String[] loadKBInfo(String mode, String parentPath) {
// Results: [0] = kbFilePath
// [1] = kbID
String[] results = new String[2];
results[0] = "";
results[1] = "";
String configFilePath = parentPath + "config/";
File configFileDir = new File(configFilePath);
if (configFileDir.isDirectory() == false) {
System.out.println(configFileDir.getName() + " directory is missing. Exiting");
System.exit(0);
}
String configFName = parentPath + "config/KB MAP.txt";
TStringList sl = new TStringList();
try {
sl.ReadFromFile(configFName);
} catch (IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
for (int i = 0; i < sl.Count(); i++) {
String s = sl.getString(i);
String lbl = s.split("=")[0];
if (lbl.equals("")) continue;
String[] lblParts = lbl.split(":");
if (lblParts.length < 2) continue;
if (lblParts[0].equals(mode) == false) continue;
if (lblParts[1].equals("KB")) {
String kbFilePath = parentPath + "kbs/" + s.split("=")[1].trim();
results[0] = kbFilePath;
} else if (lblParts[1].equals("ID")) {
results[1] = s.split("=")[1].trim(); // kb ID string
}
}
return results;
}
public static void main(String[] argv) throws InterruptedException {
// Arguments:
// 1st = Mode
// 2nd = Parent Path -- (Parent path must have children /data and /output
System.out.println("+----------------------------------+");
System.out.println("| Running Athena Pallas Processor |");
System.out.println("| 9/12/12 |");
System.out.println("+----------------------------------+");
Athena_Server_Obj = new ATHENA_Server_Local();
BasicConfigurator.configure();
Logger.getRootLogger().setLevel(Level.WARN);
// Get and verify parameters
if (argv.length < 2) {
System.out.println("Not enough parameters.");
System.out.println("Expected 2 parameters: 1st is MODE, 2nd is path to working directory.");
System.out.println("Exiting.");
System.exit(0);
}
String mode = argv[0];
String parentPath = argv[1];
File inFilePath = new File(parentPath + "astronautdata/");
File outFilePath = new File(parentPath + "output/");
File kbFilePath = new File(parentPath + "kbs/");
if (mode.equals("")) {
System.out.println("Parameter 1 is empty. Should be RUNMODE (e.g. 'HTN'). Exiting");
System.exit(0);
}
if (inFilePath.isDirectory() == false) {
System.out.println(inFilePath.getName() + " directory is missing. Exiting");
System.exit(0);
}
if (outFilePath.isDirectory() == false) {
System.out.println(outFilePath.getName() + " directory is missing. Exiting");
System.exit(0);
}
if (kbFilePath.isDirectory() == false) {
System.out.println(kbFilePath.getName() + " directory is missing. Exiting");
System.exit(0);
}
String kbID = "";
TStringList IgnoredFileNames = new TStringList();
// Main Loop
while (mainLoopRunning) {
if (Verbose == true) {
// System.out.println("New Loop");
}
fileProcessed = false;
if (Verbose == true) {
// System.out.println("Ignoring #" + IgnoredFileNames.Count() + " files.");
}
// (re)load if needed
if (loadKB == true) {
String[] kbInfo = Athena_Server_Obj.loadKBInfo(mode, parentPath);
String kbFilenamePath = kbInfo[0];
kbID = kbInfo[1];
Athena_Server_Obj.loadKB(kbFilenamePath, kbID);
loadKB = false;
}
File[] listOfFiles = inFilePath.listFiles();
// for (File child : inFilePath.listFiles()) {
for (int i = 0; i < listOfFiles.length; i++) {
File child = listOfFiles[i];
if (".".equals(child.getName()) || "..".equals(child.getName())) {
continue;
}
if (child.getName().toUpperCase().equals(mode + "-CMD.TXT")) {
try {
handleCommands(child.getPath(), outFilePath, mode);
// fileProcessed = true;
if (child.delete() == false) {
System.out.println("Unable to delete: " + child.getPath());
Thread.sleep(1000);
}
} catch (IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
// continue;
}
if (IgnoredFileNames.IndexOf(child.getName()) > -1) {
// if (Verbose == true) {System.out.print("~");}
continue;
}
if (Verbose == true) {
System.out.println("Considering file: [" + child.getName() + "]");
}
String[] namePieces = child.getName().split("_");
// (should only open filenames with format of <MODE>_<DFN>.xml)
if (Verbose == true) {
System.out.println("File Name Is: " + child.getName());
}
String fileExt = GetFileExtension(child.getName());
if (Verbose == true) {
System.out.println("File Ext Is: " + fileExt);
}
// At times, there seems to be a race condition, where this java process
// tries to load in the file before the mump process is done writting
// So I have modified the mumps process to that it outputs TWO files.
// 1st the <MODE>_<DFN>.xml file
// 2nd, after finished with above, it outputs <MODE>_<DFN>_READY.TXT
// So the 2nd file must exist before opening the <MODE>_<DFN>.xml
// The 2nd file need not be opened or processed. Just the fact that
// it exists on in the directory is signal that it is OK to process.
if (fileExt.equals("xml") == false) {
if (Verbose == true) {
System.out.println("Skipping file due to wrong extension.");
}
IgnoredFileNames.Add(child.getName());
continue;
}
if (((namePieces.length > 1) && (namePieces[0].equals(mode))) == false) {
if (Verbose == true) {
System.out.println("Skipping file due to wrong mode.");
}
IgnoredFileNames.Add(child.getName());
continue;
}
Boolean finishFileExists = finishFileExist(child.getPath());
if (Verbose == true) {
System.out.println("Ready File Exists?: " + finishFileExists);
}
// NOTE: after processing the <MODE>_<DFN>.xml, both files should be deleted
// NOTE: in java, one can't use '=' to compare strings -- that just compares a pointer to
// the string. Must use ".equals()"
if (finishFileExists == true) {
System.out.println("Found File to Process: [" + child.getName() + "]");
fileProcessed = true;
String patientID = namePieces[1];
patientID = patientID.split("\\.")[0];
File outFileName =
new File(outFilePath.getPath() + "/" + mode + "_" + patientID + ".xml");
String htmlFile = outFilePath.getPath() + "/" + mode + "_" + patientID + ".html";
System.out.println("SENDING TO: [" + outFileName.getPath() + "]");
String readyFileName;
readyFileName = outFileName.getPath();
try {
processFile(patientID, child, outFileName, kbID, htmlFile);
} catch (Throwable t) {
try {
FileWriter fwrite = new FileWriter(outFileName);
fwrite.write(
"-1^CDSS/Clinical Decision Support Engine(Athena) Error. " + t.getMessage());
fwrite.flush();
fwrite.close();
} catch (IOException e3) {
System.out.println("Could not create error message");
}
System.out.println("Error Processing Recommendation: " + t.getMessage());
// return;
}
System.out.println("Ready.TXT File Name Is: " + readyFileName); // Remove
File readyFile = new File(readyFileName.replace(".xml", "_READY.TXT"));
try {
readyFile.createNewFile();
FileWriter fstream = new FileWriter(readyFile);
BufferedWriter out = new BufferedWriter(fstream);
out.write("DONE");
out.close();
System.out.println("****SUCCESS****" + readyFile.getPath());
} catch (java.io.IOException e0) {
System.out.println("Error creating READY file");
}
if (child.delete() == false) {
System.out.println("Unable to delete: " + child.getName());
Thread.sleep(1000);
}
// Delete completed file
File f = new File(getFinishFileName(child.getPath()));
if (f.delete() == false) {
System.out.println("Unable to delete: " + f.getName());
Thread.sleep(1000);
}
}
}
if (fileProcessed == false) {
Thread.sleep(1000);
if (Verbose == true) {
System.out.print(".");
}
} else {
if (Verbose == true) {
System.out.println("Found process, so won't sleep...");
}
}
mainLoopRunning = false;
} // for loop
System.out.println("Finished with run.");
System.exit(0);
} // Main routine
public static Data getHTTPData(
HttpServletRequest req, HttpServletResponse res, String surl, long since)
throws DataSourceException, IOException {
int tries = 1;
// timeout msecs of time we're allowed in this routine
// we must return or throw an exception. 0 means infinite.
int timeout = mTimeout;
if (req != null) {
String timeoutParm = req.getParameter("timeout");
if (timeoutParm != null) {
timeout = Integer.parseInt(timeoutParm);
}
}
long t1 = System.currentTimeMillis();
long elapsed = 0;
if (surl == null) {
surl = getURL(req);
}
while (true) {
String m = null;
long tout;
if (timeout > 0) {
tout = timeout - elapsed;
if (tout <= 0) {
throw new InterruptedIOException(
/* (non-Javadoc)
* @i18n.test
* @org-mes=p[0] + " timed out"
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
HTTPDataSource.class.getName(), "051018-194", new Object[] {surl}));
}
} else {
tout = 0;
}
try {
HttpData data = getDataOnce(req, res, since, surl, 0, (int) tout);
if (data.code >= 400) {
data.release();
throw new DataSourceException(errorMessage(data.code));
}
return data;
} catch (HttpRecoverableException e) {
// This type of exception should be retried.
if (tries++ > mMaxRetries) {
throw new InterruptedIOException(
/* (non-Javadoc)
* @i18n.test
* @org-mes="too many retries, exception: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
HTTPDataSource.class.getName(), "051018-217", new Object[] {e.getMessage()}));
}
mLogger.warn(
/* (non-Javadoc)
* @i18n.test
* @org-mes="retrying a recoverable exception: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
HTTPDataSource.class.getName(), "051018-226", new Object[] {e.getMessage()}));
} catch (HttpException e) {
String msg =
/* (non-Javadoc)
* @i18n.test
* @org-mes="HttpException: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
HTTPDataSource.class.getName(), "051018-235", new Object[] {e.getMessage()});
throw new IOException(
/* (non-Javadoc)
* @i18n.test
* @org-mes="HttpException: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
HTTPDataSource.class.getName(), "051018-235", new Object[] {e.getMessage()}));
} catch (IOException e) {
try {
Class ssle = Class.forName("javax.net.ssl.SSLException");
if (ssle.isAssignableFrom(e.getClass())) {
throw new DataSourceException(
/* (non-Javadoc)
* @i18n.test
* @org-mes="SSL exception: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
HTTPDataSource.class.getName(), "051018-256", new Object[] {e.getMessage()}));
}
} catch (ClassNotFoundException cfne) {
}
throw e;
}
long t2 = System.currentTimeMillis();
elapsed = (t2 - t1);
}
}
private CIJobStatus configureJob(CIJob job, String jobType) throws PhrescoException {
if (debugEnabled) {
S_LOGGER.debug("Entering Method CIManagerImpl.createJob(CIJob job)");
}
try {
cli = getCLI(job);
List<String> argList = new ArrayList<String>();
argList.add(jobType);
argList.add(job.getName());
String jenkinsTemplateDir = Utility.getJenkinsTemplateDir();
String configFilePath = jenkinsTemplateDir + job.getRepoType() + HYPHEN + CONFIG_XML;
if (debugEnabled) {
S_LOGGER.debug("configFilePath ... " + configFilePath);
}
File configFile = new File(configFilePath);
ConfigProcessor processor = new ConfigProcessor(configFile);
customizeNodes(processor, job);
ByteArrayOutputStream baos = new ByteArrayOutputStream();
if (debugEnabled) {
S_LOGGER.debug("argList " + argList.toString());
}
int result = cli.execute(argList, processor.getConfigAsStream(), System.out, baos);
String message = "Job created successfully";
if (result == -1) {
byte[] byteArray = baos.toByteArray();
message = new String(byteArray);
}
if (debugEnabled) {
S_LOGGER.debug("message " + message);
}
// when svn is selected credential value has to set
if (SVN.equals(job.getRepoType())) {
setSvnCredential(job);
}
setMailCredential(job);
return new CIJobStatus(result, message);
} catch (IOException e) {
throw new PhrescoException(e);
} catch (JDOMException e) {
throw new PhrescoException(e);
} finally {
if (cli != null) {
try {
cli.close();
} catch (IOException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
} catch (InterruptedException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
}
}
}
}