private static void finalize(
Configuration conf, JobConf jobconf, final Path destPath, String presevedAttributes)
throws IOException {
if (presevedAttributes == null) {
return;
}
EnumSet<FileAttribute> preseved = FileAttribute.parse(presevedAttributes);
if (!preseved.contains(FileAttribute.USER)
&& !preseved.contains(FileAttribute.GROUP)
&& !preseved.contains(FileAttribute.PERMISSION)) {
return;
}
FileSystem dstfs = destPath.getFileSystem(conf);
Path dstdirlist = new Path(jobconf.get(DST_DIR_LIST_LABEL));
SequenceFile.Reader in = null;
try {
in = new SequenceFile.Reader(dstdirlist.getFileSystem(jobconf), dstdirlist, jobconf);
Text dsttext = new Text();
FilePair pair = new FilePair();
for (; in.next(dsttext, pair); ) {
Path absdst = new Path(destPath, pair.output);
updatePermissions(pair.input, dstfs.getFileStatus(absdst), preseved, dstfs);
}
} finally {
checkAndClose(in);
}
}
public void testAbort() throws IOException {
JobConf job = new JobConf();
setConfForFileOutputCommitter(job);
JobContext jContext = new JobContextImpl(job, taskID.getJobID());
TaskAttemptContext tContext = new TaskAttemptContextImpl(job, taskID);
FileOutputCommitter committer = new FileOutputCommitter();
FileOutputFormat.setWorkOutputPath(job, committer.getTempTaskOutputPath(tContext));
// do setup
committer.setupJob(jContext);
committer.setupTask(tContext);
String file = "test.txt";
// A reporter that does nothing
Reporter reporter = Reporter.NULL;
// write output
FileSystem localFs = FileSystem.getLocal(job);
TextOutputFormat theOutputFormat = new TextOutputFormat();
RecordWriter theRecordWriter = theOutputFormat.getRecordWriter(localFs, job, file, reporter);
writeOutput(theRecordWriter, reporter);
// do abort
committer.abortTask(tContext);
File expectedFile =
new File(new Path(committer.getTempTaskOutputPath(tContext), file).toString());
assertFalse("task temp dir still exists", expectedFile.exists());
committer.abortJob(jContext, JobStatus.State.FAILED);
expectedFile = new File(new Path(outDir, FileOutputCommitter.TEMP_DIR_NAME).toString());
assertFalse("job temp dir still exists", expectedFile.exists());
assertEquals("Output directory not empty", 0, new File(outDir.toString()).listFiles().length);
FileUtil.fullyDelete(new File(outDir.toString()));
}
public int run(String[] args) throws Exception {
Configuration conf = getConf();
conf.setLong("mapreduce.task.timeout", 10000 * 60 * 60);
Path train_file = new Path(args[0]);
Path test_file = new Path(args[1]);
conf.set("train_file", train_file.getParent().getName());
Job job = new Job(conf, "MapTestID");
job.setJarByClass(MapTestID.class);
job.setOutputKeyClass(Text.class);
job.setOutputValueClass(Text.class);
job.setMapperClass(MapTestID.MapTestIDMap.class);
job.setReducerClass(MapTestID.MapTestIDReduce.class);
job.setNumReduceTasks(300);
FileInputFormat.addInputPath(job, train_file);
FileInputFormat.addInputPath(job, test_file);
FileOutputFormat.setOutputPath(job, new Path(args[2]));
return job.waitForCompletion(true) ? 0 : 1;
}
/** Sanity check for srcPath */
private static void checkSrcPath(Configuration conf, List<Path> srcPaths) throws IOException {
List<IOException> rslt = new ArrayList<IOException>();
for (Path p : srcPaths) {
FileSystem fs = p.getFileSystem(conf);
if (!fs.exists(p)) {
rslt.add(new IOException("Input source " + p + " does not exist."));
}
}
if (!rslt.isEmpty()) {
throw new InvalidInputException(rslt);
}
}
/**
* Produce splits such that each is no greater than the quotient of the total size and the
* number of splits requested.
*
* @param job The handle to the JobConf object
* @param numSplits Number of splits requested
*/
public InputSplit[] getSplits(JobConf job, int numSplits) throws IOException {
int cnfiles = job.getInt(SRC_COUNT_LABEL, -1);
long cbsize = job.getLong(TOTAL_SIZE_LABEL, -1);
String srcfilelist = job.get(SRC_LIST_LABEL, "");
if (cnfiles < 0 || cbsize < 0 || "".equals(srcfilelist)) {
throw new RuntimeException(
"Invalid metadata: #files("
+ cnfiles
+ ") total_size("
+ cbsize
+ ") listuri("
+ srcfilelist
+ ")");
}
Path src = new Path(srcfilelist);
FileSystem fs = src.getFileSystem(job);
FileStatus srcst = fs.getFileStatus(src);
ArrayList<FileSplit> splits = new ArrayList<FileSplit>(numSplits);
LongWritable key = new LongWritable();
FilePair value = new FilePair();
final long targetsize = cbsize / numSplits;
long pos = 0L;
long last = 0L;
long acc = 0L;
long cbrem = srcst.getLen();
SequenceFile.Reader sl = null;
try {
sl = new SequenceFile.Reader(fs, src, job);
for (; sl.next(key, value); last = sl.getPosition()) {
// if adding this split would put this split past the target size,
// cut the last split and put this next file in the next split.
if (acc + key.get() > targetsize && acc != 0) {
long splitsize = last - pos;
splits.add(new FileSplit(src, pos, splitsize, (String[]) null));
cbrem -= splitsize;
pos = last;
acc = 0L;
}
acc += key.get();
}
} finally {
checkAndClose(sl);
}
if (cbrem != 0) {
splits.add(new FileSplit(src, pos, cbrem, (String[]) null));
}
return splits.toArray(new FileSplit[splits.size()]);
}
/**
* Make a path relative with respect to a root path. absPath is always assumed to descend from
* root. Otherwise returned path is null.
*/
static String makeRelative(Path root, Path absPath) {
if (!absPath.isAbsolute()) {
throw new IllegalArgumentException("!absPath.isAbsolute(), absPath=" + absPath);
}
String p = absPath.toUri().getPath();
StringTokenizer pathTokens = new StringTokenizer(p, "/");
for (StringTokenizer rootTokens = new StringTokenizer(root.toUri().getPath(), "/");
rootTokens.hasMoreTokens(); ) {
if (!rootTokens.nextToken().equals(pathTokens.nextToken())) {
return null;
}
}
StringBuilder sb = new StringBuilder();
for (; pathTokens.hasMoreTokens(); ) {
sb.append(pathTokens.nextToken());
if (pathTokens.hasMoreTokens()) {
sb.append(Path.SEPARATOR);
}
}
return sb.length() == 0 ? "." : sb.toString();
}
public static void recursePath(Configuration conf, Path path, Job job) {
try {
FileSystem fs = path.getFileSystem(conf);
FileStatus[] fstats = fs.listStatus(path);
if (fstats != null) {
for (FileStatus f : fstats) {
Path p = f.getPath();
;
if (fs.isFile(p)) {
// connection times out otherwise
System.err.println("file:" + p.toString());
FileInputFormat.addInputPath(job, p);
} else {
System.err.println("dir:" + p.toString());
recursePath(conf, p, job);
}
}
}
} catch (IOException e) {
// shouldn't be here
throw new RuntimeException(e);
}
}
private static boolean writeChecksum(Path localPath, String checksum) {
try {
java.io.BufferedWriter writer =
Files.newBufferedWriter(
java.nio.file.Paths.get(localPath.toString() + ".crc"), Charset.forName("UTF-8"));
writer.write(checksum);
writer.flush();
writer.close();
return true;
} catch (Exception e) {
logger.warn("Unable to write CRC file!");
return false;
}
}
private static List<Path> fetchFileList(Configuration conf, Path srcList) throws IOException {
List<Path> result = new ArrayList<Path>();
FileSystem fs = srcList.getFileSystem(conf);
BufferedReader input = null;
try {
input = new BufferedReader(new InputStreamReader(fs.open(srcList)));
String line = input.readLine();
while (line != null) {
result.add(new Path(line));
line = input.readLine();
}
} finally {
checkAndClose(input);
}
return result;
}
private static boolean checksumLocalTest(Path localPath, String checksum) {
String crcPath = localPath.toString() + ".crc";
if (Files.isReadable(java.nio.file.Paths.get(crcPath))) {
try {
List<String> lines =
Files.readAllLines(java.nio.file.Paths.get(crcPath), Charset.forName("UTF-8"));
for (String line : lines) {
if (line.equals(checksum)) {
return true;
}
}
} catch (Exception e) {
return false;
}
}
return false;
}
/**
* Mapper configuration. Extracts source and destination file system, as well as top-level paths
* on source and destination directories. Gets the named file systems, to be used later in map.
*/
public void configure(JobConf job) {
destPath = new Path(job.get(DST_DIR_LABEL, "/"));
try {
destFileSys = destPath.getFileSystem(job);
} catch (IOException ex) {
throw new RuntimeException("Unable to get the named file system.", ex);
}
sizeBuf = job.getInt("copy.buf.size", 128 * 1024);
buffer = new byte[sizeBuf];
ignoreReadFailures = job.getBoolean(Options.IGNORE_READ_FAILURES.propertyname, false);
preserve_status = job.getBoolean(Options.PRESERVE_STATUS.propertyname, false);
if (preserve_status) {
preseved = FileAttribute.parse(job.get(PRESERVE_STATUS_LABEL));
}
update = job.getBoolean(Options.UPDATE.propertyname, false);
overwrite = !update && job.getBoolean(Options.OVERWRITE.propertyname, false);
this.job = job;
}
@SuppressWarnings("unchecked")
public void testCommitter() throws Exception {
JobConf job = new JobConf();
setConfForFileOutputCommitter(job);
JobContext jContext = new JobContextImpl(job, taskID.getJobID());
TaskAttemptContext tContext = new TaskAttemptContextImpl(job, taskID);
FileOutputCommitter committer = new FileOutputCommitter();
FileOutputFormat.setWorkOutputPath(job, committer.getTempTaskOutputPath(tContext));
committer.setupJob(jContext);
committer.setupTask(tContext);
String file = "test.txt";
// A reporter that does nothing
Reporter reporter = Reporter.NULL;
// write output
FileSystem localFs = FileSystem.getLocal(job);
TextOutputFormat theOutputFormat = new TextOutputFormat();
RecordWriter theRecordWriter = theOutputFormat.getRecordWriter(localFs, job, file, reporter);
writeOutput(theRecordWriter, reporter);
// do commit
committer.commitTask(tContext);
committer.commitJob(jContext);
// validate output
File expectedFile = new File(new Path(outDir, file).toString());
StringBuffer expectedOutput = new StringBuffer();
expectedOutput.append(key1).append('\t').append(val1).append("\n");
expectedOutput.append(val1).append("\n");
expectedOutput.append(val2).append("\n");
expectedOutput.append(key2).append("\n");
expectedOutput.append(key1).append("\n");
expectedOutput.append(key2).append('\t').append(val2).append("\n");
String output = UtilsForTests.slurp(expectedFile);
assertEquals(output, expectedOutput.toString());
FileUtil.fullyDelete(new File(outDir.toString()));
}
// Information needed to get a single file:
// BASE_PATH, FILE_ID, TIMESTAMP_START, TIMESTAMP_STOP, SOURCE, FILESYSTEM
private static Vector<Path> getFile(
FileSystem fs, Hashtable<String, String> config, dbutil db_util) throws Exception {
Long latestVersion = latestVersion(config, db_util);
try {
config.put("timestamp_start", config.get("timestamp_start"));
config.put("timestamp_real", latestVersion.toString());
config.put("timestamp_stop", latestVersion.toString());
} catch (Exception E) {
logger.error("Tryign to get file that is impossible to generate: " + getFullPath(config));
return null;
}
if (Integer.parseInt(config.get("timestamp_start"))
> Integer.parseInt(config.get("timestamp_stop"))) {
return null;
}
logger.debug(
"Getting DB for timestamp "
+ config.get("timestamp_start")
+ " to "
+ config.get("timestamp_stop"));
String final_result = getFullPath(config);
String temp_path_base =
config.get("local_temp_path")
+ "_"
+ config.get("task_id")
+ "_"
+ config.get("run_id")
+ "/";
Path newPath = new Path(final_result + "*");
Vector<Path> ret_path = new Vector<Path>();
String lockName = lock(final_result.replaceAll("/", "_"));
if (fs.globStatus(newPath).length != 0) {
ret_path.add(newPath);
unlock(lockName);
config.put("full_file_name", final_result);
return ret_path;
} else {
if (!config.get("source").equals("local")) {
config.put("temp_path_base", temp_path_base);
config.put("timestamp_start", config.get("timestamp_start"));
config.put("timestamp_real", latestVersion.toString());
config.put("timestamp_stop", latestVersion.toString());
Class<?> sourceClass =
Class.forName("org.gestore.plugin.source." + config.get("source") + "Source");
Method process_data = sourceClass.getMethod("process", Hashtable.class, FileSystem.class);
Object processor = sourceClass.newInstance();
Object retVal;
try {
retVal = process_data.invoke(processor, config, fs);
} catch (InvocationTargetException E) {
Throwable exception = E.getTargetException();
logger.error("Unable to call method in child class: " + exception.toString());
exception.printStackTrace(System.out);
unlock(lockName);
return null;
}
FileStatus[] files = (FileStatus[]) retVal;
if (files == null) {
logger.error("Error getting files, no files returned");
return null;
}
for (FileStatus file : files) {
Path cur_file = file.getPath();
Path cur_local_path = new Path(temp_path_base + config.get("file_id"));
String suffix = getSuffix(config.get("file_id"), cur_file.getName());
cur_local_path = cur_local_path.suffix(suffix);
Path res_path = new Path(new String(final_result + suffix));
logger.debug("Moving file" + cur_file.toString() + " to " + res_path.toString());
if (config.get("copy").equals("true")) {
fs.moveFromLocalFile(cur_file, res_path);
} else {
fs.rename(cur_file, res_path);
}
}
config.put("full_file_name", final_result);
}
}
unlock(lockName);
return ret_path;
}
/**
* Initialize DFSCopyFileMapper specific job-configuration.
*
* @param conf : The dfs/mapred configuration.
* @param jobConf : The handle to the jobConf object to be initialized.
* @param args Arguments
*/
private static void setup(Configuration conf, JobConf jobConf, final Arguments args)
throws IOException {
jobConf.set(DST_DIR_LABEL, args.dst.toUri().toString());
// set boolean values
final boolean update = args.flags.contains(Options.UPDATE);
final boolean overwrite = !update && args.flags.contains(Options.OVERWRITE);
jobConf.setBoolean(Options.UPDATE.propertyname, update);
jobConf.setBoolean(Options.OVERWRITE.propertyname, overwrite);
jobConf.setBoolean(
Options.IGNORE_READ_FAILURES.propertyname,
args.flags.contains(Options.IGNORE_READ_FAILURES));
jobConf.setBoolean(
Options.PRESERVE_STATUS.propertyname, args.flags.contains(Options.PRESERVE_STATUS));
final String randomId = getRandomId();
JobClient jClient = new JobClient(jobConf);
Path jobDirectory = new Path(jClient.getSystemDir(), NAME + "_" + randomId);
jobConf.set(JOB_DIR_LABEL, jobDirectory.toString());
FileSystem dstfs = args.dst.getFileSystem(conf);
boolean dstExists = dstfs.exists(args.dst);
boolean dstIsDir = false;
if (dstExists) {
dstIsDir = dstfs.getFileStatus(args.dst).isDir();
}
// default logPath
Path logPath = args.log;
if (logPath == null) {
String filename = "_distcp_logs_" + randomId;
if (!dstExists || !dstIsDir) {
Path parent = args.dst.getParent();
if (!dstfs.exists(parent)) {
dstfs.mkdirs(parent);
}
logPath = new Path(parent, filename);
} else {
logPath = new Path(args.dst, filename);
}
}
FileOutputFormat.setOutputPath(jobConf, logPath);
// create src list, dst list
FileSystem jobfs = jobDirectory.getFileSystem(jobConf);
Path srcfilelist = new Path(jobDirectory, "_distcp_src_files");
jobConf.set(SRC_LIST_LABEL, srcfilelist.toString());
SequenceFile.Writer src_writer =
SequenceFile.createWriter(
jobfs,
jobConf,
srcfilelist,
LongWritable.class,
FilePair.class,
SequenceFile.CompressionType.NONE);
Path dstfilelist = new Path(jobDirectory, "_distcp_dst_files");
SequenceFile.Writer dst_writer =
SequenceFile.createWriter(
jobfs, jobConf, dstfilelist, Text.class, Text.class, SequenceFile.CompressionType.NONE);
Path dstdirlist = new Path(jobDirectory, "_distcp_dst_dirs");
jobConf.set(DST_DIR_LIST_LABEL, dstdirlist.toString());
SequenceFile.Writer dir_writer =
SequenceFile.createWriter(
jobfs,
jobConf,
dstdirlist,
Text.class,
FilePair.class,
SequenceFile.CompressionType.NONE);
// handle the case where the destination directory doesn't exist
// and we've only a single src directory OR we're updating/overwriting
// the contents of the destination directory.
final boolean special = (args.srcs.size() == 1 && !dstExists) || update || overwrite;
int srcCount = 0, cnsyncf = 0, dirsyn = 0;
long fileCount = 0L, byteCount = 0L, cbsyncs = 0L;
try {
for (Iterator<Path> srcItr = args.srcs.iterator(); srcItr.hasNext(); ) {
final Path src = srcItr.next();
FileSystem srcfs = src.getFileSystem(conf);
FileStatus srcfilestat = srcfs.getFileStatus(src);
Path root = special && srcfilestat.isDir() ? src : src.getParent();
if (srcfilestat.isDir()) {
++srcCount;
}
Stack<FileStatus> pathstack = new Stack<FileStatus>();
for (pathstack.push(srcfilestat); !pathstack.empty(); ) {
FileStatus cur = pathstack.pop();
FileStatus[] children = srcfs.listStatus(cur.getPath());
for (int i = 0; i < children.length; i++) {
boolean skipfile = false;
final FileStatus child = children[i];
final String dst = makeRelative(root, child.getPath());
++srcCount;
if (child.isDir()) {
pathstack.push(child);
} else {
// skip file if the src and the dst files are the same.
skipfile = update && sameFile(srcfs, child, dstfs, new Path(args.dst, dst));
// skip file if it exceed file limit or size limit
skipfile |=
fileCount == args.filelimit || byteCount + child.getLen() > args.sizelimit;
if (!skipfile) {
++fileCount;
byteCount += child.getLen();
if (LOG.isTraceEnabled()) {
LOG.trace("adding file " + child.getPath());
}
++cnsyncf;
cbsyncs += child.getLen();
if (cnsyncf > SYNC_FILE_MAX || cbsyncs > BYTES_PER_MAP) {
src_writer.sync();
dst_writer.sync();
cnsyncf = 0;
cbsyncs = 0L;
}
}
}
if (!skipfile) {
src_writer.append(
new LongWritable(child.isDir() ? 0 : child.getLen()), new FilePair(child, dst));
}
dst_writer.append(new Text(dst), new Text(child.getPath().toString()));
}
if (cur.isDir()) {
String dst = makeRelative(root, cur.getPath());
dir_writer.append(new Text(dst), new FilePair(cur, dst));
if (++dirsyn > SYNC_FILE_MAX) {
dirsyn = 0;
dir_writer.sync();
}
}
}
}
} finally {
checkAndClose(src_writer);
checkAndClose(dst_writer);
checkAndClose(dir_writer);
}
FileStatus dststatus = null;
try {
dststatus = dstfs.getFileStatus(args.dst);
} catch (FileNotFoundException fnfe) {
LOG.info(args.dst + " does not exist.");
}
// create dest path dir if copying > 1 file
if (dststatus == null) {
if (srcCount > 1 && !dstfs.mkdirs(args.dst)) {
throw new IOException("Failed to create" + args.dst);
}
}
final Path sorted = new Path(jobDirectory, "_distcp_sorted");
checkDuplication(jobfs, dstfilelist, sorted, conf);
if (dststatus != null && args.flags.contains(Options.DELETE)) {
deleteNonexisting(dstfs, dststatus, sorted, jobfs, jobDirectory, jobConf, conf);
}
Path tmpDir =
new Path(
(dstExists && !dstIsDir) || (!dstExists && srcCount == 1)
? args.dst.getParent()
: args.dst,
"_distcp_tmp_" + randomId);
jobConf.set(TMP_DIR_LABEL, tmpDir.toUri().toString());
LOG.info("srcCount=" + srcCount);
jobConf.setInt(SRC_COUNT_LABEL, srcCount);
jobConf.setLong(TOTAL_SIZE_LABEL, byteCount);
setMapCount(byteCount, jobConf);
}
/** Fully delete dir */
static void fullyDelete(String dir, Configuration conf) throws IOException {
if (dir != null) {
Path tmp = new Path(dir);
tmp.getFileSystem(conf).delete(tmp, true);
}
}
public int run(String[] args) throws Exception {
// printUsage();
/*
* SETUP
*/
Configuration argConf = getConf();
Hashtable<String, String> confArg = new Hashtable<String, String>();
setup(confArg, argConf);
Date currentTime = new Date();
Date endDate = new Date(new Long(confArg.get("timestamp_stop")));
Boolean full_run = confArg.get("intermediate").matches("(?i).*true.*");
Boolean quick_add = confArg.get("quick_add").matches("(?i).*true.*");
logger.info("Running GeStore");
// ZooKeeper setup
Configuration config = HBaseConfiguration.create();
zkWatcher = new ZooKeeperWatcher(config, "Testing", new HBaseAdmin(config));
zkInstance =
new ZooKeeper(
ZKConfig.getZKQuorumServersString(config),
config.getInt("zookeeper.session.timeout", -1),
zkWatcher);
if (!confArg.get("task_id").isEmpty()) {
confArg.put("temp_path", confArg.get("temp_path") + confArg.get("task_id"));
}
String lockRequest = confArg.get("file_id");
if (!confArg.get("run_id").isEmpty())
lockRequest = lockRequest + "_" + confArg.get("run_id") + "_";
if (!confArg.get("task_id").isEmpty())
lockRequest = lockRequest + "_" + confArg.get("task_id") + "_";
// Get type of movement
toFrom type_move = checkArgs(confArg);
if (type_move == toFrom.LOCAL2REMOTE && !confArg.get("format").equals("unknown")) {
List<String> arguments = new ArrayList<String>();
arguments.add("-Dinput=" + confArg.get("local_path"));
arguments.add("-Dtable=" + confArg.get("file_id"));
arguments.add("-Dtimestamp=" + confArg.get("timestamp_stop"));
arguments.add("-Dtype=" + confArg.get("format"));
arguments.add("-Dtarget_dir=" + confArg.get("base_path") + "_" + confArg.get("file_id"));
arguments.add("-Dtemp_hdfs_path=" + confArg.get("temp_path"));
arguments.add("-Drun_id=" + confArg.get("run_id"));
if (!confArg.get("run_id").isEmpty()) arguments.add("-Drun_id=" + confArg.get("run_id"));
if (!confArg.get("task_id").isEmpty()) arguments.add("-Dtask_id=" + confArg.get("task_id"));
if (quick_add) arguments.add("-Dquick_add=" + confArg.get("quick_add"));
String lockName = lock(lockRequest);
String[] argumentString = arguments.toArray(new String[arguments.size()]);
adddb.main(argumentString);
unlock(lockName);
System.exit(0);
}
// Database registration
dbutil db_util = new dbutil(config);
db_util.register_database(confArg.get("db_name_files"), true);
db_util.register_database(confArg.get("db_name_runs"), true);
db_util.register_database(confArg.get("db_name_updates"), true);
FileSystem hdfs = FileSystem.get(config);
FileSystem localFS = FileSystem.getLocal(config);
// Get source type
confArg.put("source", getSource(db_util, confArg.get("db_name_files"), confArg.get("file_id")));
confArg.put(
"database", isDatabase(db_util, confArg.get("db_name_files"), confArg.get("file_id")));
if (!confArg.get("source").equals("local")
&& type_move == toFrom.REMOTE2LOCAL
&& !confArg.get("timestamp_stop").equals(Integer.toString(Integer.MAX_VALUE))) {
confArg.put("timestamp_stop", Long.toString(latestVersion(confArg, db_util)));
}
/*
* Get previous timestamp
*/
Get run_id_get = new Get(confArg.get("run_id").getBytes());
Result run_get = db_util.doGet(confArg.get("db_name_runs"), run_id_get);
KeyValue run_file_prev =
run_get.getColumnLatest(
"d".getBytes(), (confArg.get("file_id") + "_db_timestamp").getBytes());
String last_timestamp = new String("0");
if (null != run_file_prev && !confArg.get("source").equals("local")) {
long last_timestamp_real = run_file_prev.getTimestamp();
Long current_timestamp = new Long(confArg.get("timestamp_real"));
if ((current_timestamp - last_timestamp_real) > 36000) {
last_timestamp = new String(run_file_prev.getValue());
Integer lastTimestamp = new Integer(last_timestamp);
lastTimestamp += 1;
last_timestamp = lastTimestamp.toString();
logger.info("Last timestamp: " + last_timestamp + " End data: " + endDate);
Date last_run = new Date(run_file_prev.getTimestamp());
if (last_run.before(endDate) && !full_run) {
confArg.put("timestamp_start", last_timestamp);
}
}
}
Integer tse = new Integer(confArg.get("timestamp_stop"));
Integer tss = new Integer(confArg.get("timestamp_start"));
if (tss > tse) {
logger.info("No new version of requested file.");
return 0;
}
/*
* Generate file
*/
String lockName = lock(lockRequest);
Get file_id_get = new Get(confArg.get("file_id").getBytes());
Result file_get = db_util.doGet(confArg.get("db_name_files"), file_id_get);
if (!file_get.isEmpty()) {
boolean found =
hasFile(
db_util,
hdfs,
confArg.get("db_name_files"),
confArg.get("file_id"),
getFullPath(confArg));
if (confArg.get("source").equals("fullfile")) {
found = false;
}
String filenames_put =
getFileNames(
db_util, confArg.get("db_name_files"), confArg.get("file_id"), getFullPath(confArg));
// Filename not found in file database
if (!found && type_move == toFrom.REMOTE2LOCAL) {
if (!confArg.get("source").equals("local")) {
// Generate intermediate file
if (getFile(hdfs, confArg, db_util) == null) {
unlock(lockName);
return 1;
}
// Put generated file into file database
if (!confArg.get("format").equals("fullfile")) {
putFileEntry(
db_util,
hdfs,
confArg.get("db_name_files"),
confArg.get("file_id"),
confArg.get("full_file_name"),
confArg.get("source"));
}
} else {
logger.warn("Remote file not found, and cannot be generated! File: " + confArg);
unlock(lockName);
return 1;
}
}
} else {
if (type_move == toFrom.REMOTE2LOCAL) {
logger.warn("Remote file not found, and cannot be generated.");
unlock(lockName);
return 1;
}
}
/*
* Copy file
* Update tables
*/
if (type_move == toFrom.LOCAL2REMOTE) {
if (!confArg.get("format").equals("fullfile")) {
putFileEntry(
db_util,
hdfs,
confArg.get("db_name_files"),
confArg.get("file_id"),
getFullPath(confArg),
confArg.get("source"));
}
putRunEntry(
db_util,
confArg.get("db_name_runs"),
confArg.get("run_id"),
confArg.get("file_id"),
confArg.get("type"),
confArg.get("timestamp_real"),
confArg.get("timestamp_stop"),
getFullPath(confArg),
confArg.get("delimiter"));
hdfs.copyFromLocalFile(new Path(confArg.get("local_path")), new Path(getFullPath(confArg)));
} else if (type_move == toFrom.REMOTE2LOCAL) {
FileStatus[] files = hdfs.globStatus(new Path(getFullPath(confArg) + "*"));
putRunEntry(
db_util,
confArg.get("db_name_runs"),
confArg.get("run_id"),
confArg.get("file_id"),
confArg.get("type"),
confArg.get("timestamp_real"),
confArg.get("timestamp_stop"),
getFullPath(confArg),
confArg.get("delimiter"));
unlock(lockName);
for (FileStatus file : files) {
Path cur_file = file.getPath();
Path cur_local_path =
new Path(new String(confArg.get("local_path") + confArg.get("file_id")));
String suffix = getSuffix(getFileName(confArg), cur_file.getName());
if (suffix.length() > 0) {
cur_local_path = cur_local_path.suffix(new String("." + suffix));
}
if (confArg.get("copy").equals("true")) {
String crc = hdfs.getFileChecksum(cur_file).toString();
if (checksumLocalTest(cur_local_path, crc)) {
continue;
} else {
hdfs.copyToLocalFile(cur_file, cur_local_path);
writeChecksum(cur_local_path, crc);
}
} else {
System.out.println(cur_local_path + "\t" + cur_file);
}
}
}
unlock(lockName);
return 0;
}
/**
* Copy a file to a destination.
*
* @param srcstat src path and metadata
* @param dstpath dst path
* @param reporter
*/
private void copy(
FileStatus srcstat,
Path relativedst,
OutputCollector<WritableComparable<?>, Text> outc,
Reporter reporter)
throws IOException {
Path absdst = new Path(destPath, relativedst);
int totfiles = job.getInt(SRC_COUNT_LABEL, -1);
assert totfiles >= 0 : "Invalid file count " + totfiles;
// if a directory, ensure created even if empty
if (srcstat.isDir()) {
if (destFileSys.exists(absdst)) {
if (!destFileSys.getFileStatus(absdst).isDir()) {
throw new IOException("Failed to mkdirs: " + absdst + " is a file.");
}
} else if (!destFileSys.mkdirs(absdst)) {
throw new IOException("Failed to mkdirs " + absdst);
}
// TODO: when modification times can be set, directories should be
// emitted to reducers so they might be preserved. Also, mkdirs does
// not currently return an error when the directory already exists;
// if this changes, all directory work might as well be done in reduce
return;
}
if (destFileSys.exists(absdst) && !overwrite && !needsUpdate(srcstat, destFileSys, absdst)) {
outc.collect(null, new Text("SKIP: " + srcstat.getPath()));
++skipcount;
reporter.incrCounter(Counter.SKIP, 1);
updateStatus(reporter);
return;
}
Path tmpfile = new Path(job.get(TMP_DIR_LABEL), relativedst);
long cbcopied = 0L;
FSDataInputStream in = null;
FSDataOutputStream out = null;
try {
// open src file
try {
in = srcstat.getPath().getFileSystem(job).open(srcstat.getPath());
} catch (IOException e) {
LOG.error("Failed to open src file " + srcstat.getPath() + ", ignore and return");
in = null;
return;
}
reporter.incrCounter(Counter.BYTESEXPECTED, srcstat.getLen());
// open tmp file
out = create(tmpfile, reporter, srcstat);
// copy file
for (int cbread; (cbread = in.read(buffer)) >= 0; ) {
out.write(buffer, 0, cbread);
cbcopied += cbread;
reporter.setStatus(
String.format("%.2f ", cbcopied * 100.0 / srcstat.getLen())
+ absdst
+ " [ "
+ StringUtils.humanReadableInt(cbcopied)
+ " / "
+ StringUtils.humanReadableInt(srcstat.getLen())
+ " ]");
}
} finally {
checkAndClose(in);
checkAndClose(out);
}
if (cbcopied != srcstat.getLen()) {
if (srcstat.getLen() == 0 && cbcopied > 0) {
LOG.info("most likely see a WAL file corruption: " + srcstat.getPath());
} else {
throw new IOException(
"File size not matched: copied "
+ bytesString(cbcopied)
+ " to tmpfile (="
+ tmpfile
+ ") but expected "
+ bytesString(srcstat.getLen())
+ " from "
+ srcstat.getPath());
}
} else {
if (totfiles == 1) {
// Copying a single file; use dst path provided by user as destination
// rather than destination directory, if a file
Path dstparent = absdst.getParent();
if (!(destFileSys.exists(dstparent) && destFileSys.getFileStatus(dstparent).isDir())) {
absdst = dstparent;
}
}
if (destFileSys.exists(absdst) && destFileSys.getFileStatus(absdst).isDir()) {
throw new IOException(absdst + " is a directory");
}
if (!destFileSys.mkdirs(absdst.getParent())) {
throw new IOException("Failed to craete parent dir: " + absdst.getParent());
}
rename(tmpfile, absdst);
FileStatus dststat = destFileSys.getFileStatus(absdst);
if (dststat.getLen() != srcstat.getLen()) {
destFileSys.delete(absdst, false);
throw new IOException(
"File size not matched: copied "
+ bytesString(dststat.getLen())
+ " to dst (="
+ absdst
+ ") but expected "
+ bytesString(srcstat.getLen())
+ " from "
+ srcstat.getPath());
}
updatePermissions(srcstat, dststat);
}
// report at least once for each file
++copycount;
reporter.incrCounter(Counter.BYTESCOPIED, cbcopied);
reporter.incrCounter(Counter.COPY, 1);
updateStatus(reporter);
}