/**
* Checks every node if it is essential for the network to be connected (i.e., the node is a
* failure node). In each step, the network is prepared by setting all removed nodes (incl. the
* one that is currently examined) to be iteration-path blocking and the iteration is then started
* with a node that is known exist. All nodes that have their essentiality flag switched on are
* then added to an array that is returned.
*
* @param removeArrayIndices An ArrayList of Integers (indices of the {@link nodeIndices} array)
* that should be considered as removed from the network, i.e. are not transversible by {@link
* iterateNetwork()}. An empty list can also be supplied and means that no nodes are removed.
* @return An array of node indices that were determined to be failure points.
*/
public int[] getFailureNodes(ArrayList<Integer> removeArrayIndices) {
// array to capture whether node at nodeIndices[i] is essential or not
boolean nodeEssential[] = new boolean[nodeIndices.length];
// loop through nodes that are not removed with removeNodeIndices
for (int curArrayIndex = 0; curArrayIndex < nodeIndices.length; curArrayIndex++) {
if (removeArrayIndices.contains((Integer) curArrayIndex)) {
continue;
}
// set current and all nodes in removeNodeIndices to visited
boolean nodeReachable[] = new boolean[nodeIndices.length];
nodeReachable[curArrayIndex] = true;
for (int arrayIdx : removeArrayIndices) {
nodeReachable[arrayIdx] = true;
}
// start iteration at a non-visited node and check if all were reached
iterateNetwork(ArrayUtils.indexOf(nodeReachable, false), nodeReachable);
nodeEssential[curArrayIndex] = ArrayUtils.indexOf(nodeReachable, false) != -1;
}
// return array with node indices that are essential (=failure points)
ArrayList failureNodes = new ArrayList<Integer>();
for (int curArrayIndex = 0; curArrayIndex < nodeEssential.length; curArrayIndex++) {
if (nodeEssential[curArrayIndex] == true) {
failureNodes.add(a2nIdx(curArrayIndex));
}
}
return list2array(failureNodes);
}
public static Integer findIdColumn(String[] headings) {
int idCol = -1;
idCol = ArrayUtils.indexOf(headings, "local_id");
if (idCol > -1) {
return idCol;
}
idCol = ArrayUtils.indexOf(headings, "mrb_id");
if (idCol > -1) {
return idCol;
}
idCol = ArrayUtils.indexOf(headings, "waterid");
if (idCol > -1) {
return idCol;
}
idCol = ArrayUtils.indexOf(headings, "reach");
if (idCol > -1) {
return idCol;
}
return -1;
}
@SuppressWarnings("unchecked")
public boolean onPreUpdate(PreUpdateEvent event) {
Object entity = event.getEntity();
boolean evict = false;
if (preUpdateEventListener != null) {
evict = preUpdateEventListener.call(entity);
synchronizePersisterState(entity, event.getPersister(), event.getState());
}
if (lastUpdatedProperty != null && shouldTimestamp) {
Object now =
DefaultGroovyMethods.newInstance(
lastUpdatedProperty.getType(), new Object[] {System.currentTimeMillis()});
event
.getState()[
ArrayUtils.indexOf(
event.getPersister().getPropertyNames(),
GrailsDomainClassProperty.LAST_UPDATED)] =
now;
lastUpdatedProperty.setProperty(entity, now);
}
if (!AbstractSavePersistentMethod.isAutoValidationDisabled(entity)
&& !DefaultTypeTransformation.castToBoolean(
validateMethod.invoke(entity, new Object[] {validateParams}))) {
evict = true;
if (failOnErrorEnabled) {
Errors errors = (Errors) errorsProperty.getProperty(entity);
throw new ValidationException(
"Validation error whilst flushing entity [" + entity.getClass().getName() + "]",
errors);
}
}
return evict;
}
/**
* this method can be used to modify the state of particular property.
*
* @param currentState array of property values
* @param propertyNames array of property names
* @param propertyToSet property to be modified
* @param value newValue to set
*/
public static void setValue(
Object[] currentState, String[] propertyNames, String propertyToSet, Object value) {
int index = ArrayUtils.indexOf(propertyNames, propertyToSet);
if (index >= 0) {
currentState[index] = value;
}
}
/**
* Reads the network structure from Cytoscape and creates an array with node indices as well as
* the plugin GUI upon clicking on the menu entry. Performs sanity checks on the network data.
*
* @param actionEvent The unused click-event on the menu entry.
*/
@Override
public void actionPerformed(ActionEvent e) {
// initialise network and node indices
net = Cytoscape.getCurrentNetwork();
netView = Cytoscape.getCurrentNetworkView();
nodeIndices = net.getNodeIndicesArray();
// create PluginGUI panel inside frame and display
JFrame pluginFrame = new JFrame();
JPanel pluginPanel = new MainPanel(myPlugin, nodeIndices.length, net.getEdgeCount());
pluginFrame.setTitle("Network Failure Plugin");
pluginFrame.add(pluginPanel);
pluginFrame.pack();
pluginFrame.setResizable(false);
pluginFrame.setVisible(true);
// check if netword contains nodes
if (nodeIndices.length < 3) {
final String msg = "No network loaded or netword contains under 3 nodes";
JOptionPane.showMessageDialog(pluginFrame, msg, "Error", JOptionPane.ERROR_MESSAGE);
pluginFrame.dispose();
return;
}
// check if network is not already split
boolean nodeReachable[] = new boolean[nodeIndices.length];
iterateNetwork(0, nodeReachable);
if (ArrayUtils.indexOf(nodeReachable, false) != -1) {
final String msg =
"Need a functional network to analyse, this one is already split.\n"
+ "You may remove isolated subnetworks and re-run the plugin.";
JOptionPane.showMessageDialog(pluginFrame, msg, "Error", JOptionPane.ERROR_MESSAGE);
pluginFrame.dispose();
return;
}
}
public static int[] removeZeroFromChord(int[] chord) {
int[] tempChord = chord;
while (ArrayUtils.contains(tempChord, ZERO)) {
int index = ArrayUtils.indexOf(tempChord, ZERO);
tempChord = ArrayUtils.remove(tempChord, index);
}
return tempChord;
}
@Test
public void checkSetPeriodIndexGetMean() {
double mag = 5.0;
double rJB = 10.0;
double rake = 0.0;
double period = 1.0;
int iper = ArrayUtils.indexOf(ToroEtAl2002Constants.PERIOD, period);
toro2002SHARE.getParameter(MagParam.NAME).setValue(mag);
toro2002SHARE.getParameter(DistanceJBParameter.NAME).setValue(rJB);
toro2002SHARE.getParameter(RakeParam.NAME).setValue(rake);
toro2002SHARE.getParameter(PeriodParam.NAME).setValue(period);
toro2002SHARE.setIntensityMeasure(SA_Param.NAME);
assertTrue(toro2002SHARE.getMean() == toro2002SHARE.getMean(iper, mag, rJB, rake));
}
/** Check SA at T = 4 s */
@Test
public final void sa4s() {
double mag = 5.0;
double rJB = 10.0;
double rake = 0.0;
double period = 4.0;
String stdDevType = StdDevTypeParam.STD_DEV_TYPE_TOTAL;
int iper = ArrayUtils.indexOf(ToroEtAl2002Constants.PERIOD, period);
toro2002SHARE.getParameter(MagParam.NAME).setValue(mag);
toro2002SHARE.getParameter(DistanceJBParameter.NAME).setValue(rJB);
toro2002SHARE.getParameter(RakeParam.NAME).setValue(rake);
toro2002SHARE.getParameter(PeriodParam.NAME).setValue(period);
toro2002SHARE.getParameter(StdDevTypeParam.NAME).setValue(stdDevType);
toro2002SHARE.setIntensityMeasure(SA_Param.NAME);
assertTrue(toro2002SHARE.getStdDev() == toro2002SHARE.getStdDev(iper, mag, rJB, stdDevType));
}
@SuppressWarnings("unchecked")
private static void accessProperty(
InputStream input,
OutputStream output,
String[] keys,
PropertyOperation operation,
boolean autoclose)
throws IOException {
List<String> lines = new ArrayList<String>();
List<String> result = new ArrayList<String>();
try {
lines = IOUtils.readLines(input);
} finally {
if (autoclose) {
IOUtils.closeQuietly(input);
}
}
try {
for (String line : lines) {
int offset = line.indexOf("=");
if (line.trim().length() > 0 && offset > -1) {
String originalKey = line.substring(0, offset).trim();
String originalValue = line.substring(++offset);
int index = ArrayUtils.indexOf(keys, originalKey);
if (index > -1) {
String outputLine = operation.process(line, originalKey, originalValue);
if (outputLine != null) {
result.add(outputLine);
}
} else {
result.add(line);
}
} else {
result.add(line);
}
}
if (output != null) {
IOUtils.writeLines(result, null, output);
}
} finally {
if (autoclose) {
IOUtils.closeQuietly(output);
}
}
}
public TblColRef findPKByFK(TblColRef fk, String joinType) {
assert isFactTable(fk.getTable());
TblColRef candidate = null;
for (LookupDesc dim : lookups) {
JoinDesc join = dim.getJoin();
if (join == null) continue;
if (joinType != null && !joinType.equals(join.getType())) continue;
int find = ArrayUtils.indexOf(join.getForeignKeyColumns(), fk);
if (find >= 0) {
candidate = join.getPrimaryKeyColumns()[find];
if (join.getForeignKeyColumns().length == 1) { // is single
// column join?
break;
}
}
}
return candidate;
}
public void changeLocale(final Activity activity) {
// Get the index of the current locale
final int currentIndex = ArrayUtils.indexOf(mLocaleCodes, mLocaleCode);
// Populate and show the language menu
Builder builder = new Builder(activity);
builder.setTitle(R.string.menuItem_localeOverride);
builder.setSingleChoiceItems(
mLocaleNames,
currentIndex,
new DialogInterface.OnClickListener() {
@Override
public void onClick(DialogInterface dialog, int which) {
dialog.dismiss();
if (which >= 0 && which != currentIndex) {
mPreferences.edit().putString(KEY_LOCALE_OVERRIDE, mLocaleCodes[which]).commit();
ActivityHelper.restartActivity(activity);
}
}
});
builder.create().show();
}
@Override
public DecResult decode(DecContext ctx) {
byte[] bytes = ctx.getDecBytes();
Object ret = null;
int index = ArrayUtils.indexOf(bytes, (byte) 0x00);
if (-1 == index) {
String errmsg = "CStyleString: could not found \\0 for string terminated.";
if (null != ctx.getField()) {
errmsg += "/ cause field is [" + ctx.getField() + "]";
}
logger.error(errmsg);
throw new RuntimeException(errmsg);
}
try {
byte[] tmp = ArrayUtils.subarray(bytes, 0, index);
ret = new String(tmp, XIP_STR_CHARSET);
} catch (UnsupportedEncodingException e) {
logger.error("CStyleString", e);
}
return new DecResult(ret, ArrayUtils.subarray(bytes, index + 1, bytes.length));
}
/**
* Converts a node index to a nodeIndices array index.
*
* @param arrayIndex A given node index.
* @return The corresponding array index.
*/
private int n2aIdx(int nodeIndex) {
return ArrayUtils.indexOf(nodeIndices, nodeIndex);
}
/**
* @brief 数组工具
* @details 详细说明
* @warning 注意事项
* @date 2014-7-11 上午11:25:18
*/
@Test
public void array() {
// 追加元素到数组尾部
int[] array1 = {1, 2};
array1 = ArrayUtils.add(array1, 3); // => [1, 2, 3]
System.out.println(array1.length); // 3
System.out.println(array1[2]); // 3
// 删除指定位置的元素
int[] array2 = {1, 2, 3};
array2 = ArrayUtils.remove(array2, 2); // => [1, 2]
System.out.println(array2.length); // 2
// 截取部分元素
int[] array3 = {1, 2, 3, 4};
array3 = ArrayUtils.subarray(array3, 1, 3); // => [2, 3]
System.out.println(array3.length); // 2
// 数组拷贝
String[] array4 = {"aaa", "bbb", "ccc"};
String[] copied = (String[]) ArrayUtils.clone(array4); // => {"aaa", "bbb", "ccc"}
System.out.println(copied.length); // 3
// 判断是否包含某元素
String[] array5 = {"aaa", "bbb", "ccc", "bbb"};
boolean result1 = ArrayUtils.contains(array5, "bbb"); // => true
System.out.println(result1); // true
// 判断某元素在数组中出现的位置（从前往后，没有返回-1）
int result2 = ArrayUtils.indexOf(array5, "bbb"); // => 1
System.out.println(result2); // 1
// 判断某元素在数组中出现的位置（从后往前，没有返回-1）
int result3 = ArrayUtils.lastIndexOf(array5, "bbb"); // => 3
System.out.println(result3); // 3
// 数组转Map
Map<Object, Object> map =
ArrayUtils.toMap(
new String[][] {
{"key1", "value1"},
{"key2", "value2"}
});
System.out.println(map.get("key1")); // "value1"
System.out.println(map.get("key2")); // "value2"
// 判断数组是否为空
Object[] array61 = new Object[0];
Object[] array62 = null;
Object[] array63 = new Object[] {"aaa"};
System.out.println(ArrayUtils.isEmpty(array61)); // true
System.out.println(ArrayUtils.isEmpty(array62)); // true
// 判断数组长度是否相等
Object[] array71 = new Object[] {"aa", "bb", "cc"};
Object[] array72 = new Object[] {"dd", "ee", "ff"};
System.out.println(ArrayUtils.isSameLength(array71, array72)); // true
// 判断数组元素内容是否相等
Object[] array81 = new Object[] {"aa", "bb", "cc"};
Object[] array82 = new Object[] {"aa", "bb", "cc"};
System.out.println(ArrayUtils.isEquals(array81, array82));
// Integer[] 转化为 int[]
Integer[] array9 = new Integer[] {1, 2};
int[] result = ArrayUtils.toPrimitive(array9);
System.out.println(result.length); // 2
System.out.println(result[0]); // 1
// int[] 转化为 Integer[]
int[] array10 = new int[] {1, 2};
Integer[] result10 = ArrayUtils.toObject(array10);
System.out.println(result.length); // 2
System.out.println(result10[0].intValue()); // 1
}
/**
* load the Element's parameters to EMF Model
*
* @param elemParam
* @param paType
*/
public static void loadElementParameters(
Element elemParam, ParametersType paType, String repParamName) {
if (paType == null || elemParam == null) {
return;
}
EList listParamType = paType.getElementParameter();
ElementParameterType repositoryParam = null;
if (repParamName != null && !repParamName.equals("")) {
repositoryParam = findElementParameterType(paType, repParamName);
} else {
repositoryParam =
findElementParameterType(
paType,
EParameterName.PROPERTY_TYPE.getName()
+ ":"
+ EParameterName.PROPERTY_TYPE.getName());
}
IElementParameter statsDBType = null;
IElementParameter implicitDBType = null;
IElementParameter statsDBVersion = null;
IElementParameter implicitDBVersion = null;
for (int j = 0; j < listParamType.size(); j++) {
ElementParameterType pType = (ElementParameterType) listParamType.get(j);
if (pType != null) {
String pTypeName = pType.getName();
if (pTypeName != null && !"".equals(pTypeName)) {
IElementParameter param = elemParam.getElementParameter(pTypeName);
if (pTypeName.equals("DB_TYPE")) { // $NON-NLS-1$
statsDBType = param;
} else if (pTypeName.equals("DB_VERSION")) { // $NON-NLS-1$
statsDBVersion = param;
} else if (pTypeName.equals("DB_TYPE_IMPLICIT_CONTEXT")) { // $NON-NLS-1$
implicitDBType = param;
} else if (pTypeName.equals("DB_VERSION_IMPLICIT_CONTEXT")) { // $NON-NLS-1$
implicitDBVersion = param;
}
if (param != null) {
String name = param.getName();
param.setContextMode(pType.isContextMode());
if (param.isReadOnly()
&& !(EParameterName.UNIQUE_NAME.getName().equals(name)
|| EParameterName.VERSION.getName().equals(name))) {
continue; // if the parameter is read only, don't load
// it (this will prevent to overwrite the
// value)
}
String value = null;
if ("STATANDLOG_USE_PROJECT_SETTINGS".equals(name) // $NON-NLS-1$
|| "IMPLICITCONTEXT_USE_PROJECT_SETTINGS".equals(name)) { // $NON-NLS-1$
Object value2 = param.getValue();
if (value2 != null) {
value = value2.toString();
}
} else {
value = pType.getValue();
}
if (param.getFieldType().equals(EParameterFieldType.CHECK)
|| param.getFieldType().equals(EParameterFieldType.RADIO)) {
if (Boolean.FALSE.toString().equalsIgnoreCase(value)
|| Boolean.TRUE.toString().equalsIgnoreCase(value)
|| !pType.isContextMode()) {
Boolean boolean1 = new Boolean(value);
elemParam.setPropertyValue(pTypeName, boolean1);
} else {
elemParam.setPropertyValue(pTypeName, value);
}
// if (EParameterName.ACTIVATE.getName().equals(param.getName())) {
// if ((elemParam instanceof Node) && !boolean1) {
// ((Node) elemParam).setDummy(!boolean1);
// }
// }
} else if (param.getFieldType().equals(EParameterFieldType.CLOSED_LIST)) {
boolean valueSet = false;
if (!ArrayUtils.contains(param.getListItemsValue(), value)) {
if (ArrayUtils.contains(param.getListItemsDisplayName(), value)) {
valueSet = true;
int index = ArrayUtils.indexOf(param.getListItemsDisplayName(), value);
if (index > -1) {
elemParam.setPropertyValue(pTypeName, param.getListItemsValue()[index]);
}
} else if (value.equals("")
&& name != null
&& (name.equals("LOAD_NEW_VARIABLE") || name.equals("NOT_LOAD_OLD_VARIABLE"))) {
valueSet = true;
elemParam.setPropertyValue(pTypeName, param.getListItemsValue()[1]);
}
}
if (!valueSet) {
elemParam.setPropertyValue(pTypeName, value);
}
} else if (param.getFieldType().equals(EParameterFieldType.TABLE)) {
List<Map<String, Object>> tableValues = new ArrayList<Map<String, Object>>();
String[] codeList = param.getListItemsDisplayCodeName();
Map<String, Object> lineValues = null;
for (ElementValueType elementValue :
(List<ElementValueType>) pType.getElementValue()) {
boolean found = false;
int length = codeList.length;
if (length > 0) {
for (int i = 0; i < length && !found; i++) {
if (codeList[i].equals(elementValue.getElementRef())) {
found = true;
}
}
}
IElementParameter tmpParam = null;
for (Object o : param.getListItemsValue()) {
if (o instanceof IElementParameter) {
IElementParameter tableParam = (IElementParameter) o;
if (tableParam.getName().equals(elementValue.getElementRef())) {
tmpParam = tableParam;
break;
}
}
}
if (found) {
if ((lineValues == null)
|| (lineValues.get(elementValue.getElementRef()) != null)) {
lineValues = new HashMap<String, Object>();
tableValues.add(lineValues);
}
String elemValue = elementValue.getValue();
if (tmpParam != null
&& EParameterFieldType.PASSWORD.equals(tmpParam.getFieldType())) {
elemValue = elementValue.getRawValue();
}
lineValues.put(elementValue.getElementRef(), elemValue);
if (elementValue.getType() != null) {
lineValues.put(
elementValue.getElementRef() + IEbcdicConstant.REF_TYPE,
elementValue.getType());
}
}
}
elemParam.setPropertyValue(pTypeName, tableValues);
} else if (param.getFieldType().equals(EParameterFieldType.PASSWORD)) {
param.setValue(pType.getRawValue());
} else if (param.getFieldType().equals(EParameterFieldType.ENCODING_TYPE)) {
// fix for bug 2193
boolean setToCustom = false;
if (EmfComponent.REPOSITORY.equals(
elemParam.getPropertyValue(EParameterName.PROPERTY_TYPE.getName()))
&& param.getRepositoryValue() != null
&& param.getRepositoryValue().equals("ENCODING")) { // $NON-NLS-1$
setToCustom = true;
}
String tempValue = null;
IElementParameter iElementParameter = null;
Map<String, IElementParameter> childParameters = param.getChildParameters();
if (childParameters != null) {
iElementParameter = childParameters.get(EParameterName.ENCODING_TYPE.getName());
if (iElementParameter != null) {
tempValue = (String) iElementParameter.getValue();
}
}
if (tempValue != null && !tempValue.equals(EmfComponent.ENCODING_TYPE_CUSTOM)) {
tempValue = tempValue.replaceAll("'", ""); // $NON-NLS-1$ //$NON-NLS-2$
tempValue = tempValue.replaceAll("\"", ""); // $NON-NLS-1$ //$NON-NLS-2$
tempValue = TalendTextUtils.addQuotes(tempValue);
if (!tempValue.equals(value)) {
setToCustom = true;
}
}
if (iElementParameter != null && setToCustom) {
iElementParameter.setValue(EmfComponent.ENCODING_TYPE_CUSTOM);
}
elemParam.setPropertyValue(pTypeName, value);
// end of fix for bug 2193
} else if (!param.getFieldType().equals(EParameterFieldType.SCHEMA_TYPE)) {
if (param.getRepositoryValue() != null
&& !param.getFieldType().equals(EParameterFieldType.PROPERTY_TYPE)) {
if (repositoryParam != null
&& EmfComponent.REPOSITORY.equals(repositoryParam.getValue())) {
param.setRepositoryValueUsed(true);
} else {
param.setRepositoryValueUsed(false);
}
}
elemParam.setPropertyValue(pTypeName, value);
}
} else if (UpdateTheJobsActionsOnTable.isClear
&& "CLEAR_TABLE".equals(pTypeName) // $NON-NLS-1$
&& "true".equals(pType.getValue()) // $NON-NLS-1$
&& "NONE"
.equals(
elemParam
.getElementParameter(Process.TABLE_ACTION)
.getValue())) { //$NON-NLS-1$
elemParam.setPropertyValue(Process.TABLE_ACTION, "CLEAR"); // $NON-NLS-1$
UpdateTheJobsActionsOnTable.isClear = false;
}
}
}
}
// update combo list for dbversion
if (statsDBType != null && statsDBVersion != null) {
JobSettingVersionUtil.setDbVersion(
statsDBVersion,
String.valueOf(statsDBType.getValue()),
String.valueOf(statsDBVersion.getValue()));
}
if (implicitDBType != null && implicitDBVersion != null) {
JobSettingVersionUtil.setDbVersion(
implicitDBVersion,
String.valueOf(implicitDBType.getValue()),
String.valueOf(implicitDBVersion.getValue()));
}
}