public ArrayList findAllEventCRFByStudy(StudyBean study) {
this.setTypesExpected();
ArrayList alist = new ArrayList();
this.setTypeExpected(11, TypeNames.STRING); // ss.label
this.setTypeExpected(12, TypeNames.DATE); // date_start
this.setTypeExpected(13, TypeNames.STRING); // sed_name
this.setTypeExpected(14, TypeNames.STRING); // crf_name
this.setTypeExpected(15, TypeNames.STRING); // column_name
this.setTypeExpected(16, TypeNames.INT); // event_crf_id
HashMap variables = new HashMap();
variables.put(new Integer(1), new Integer(study.getId()));
variables.put(new Integer(2), new Integer(study.getId()));
alist = this.select(digester.getQuery("findAllEventCRFByStudy"), variables);
ArrayList al = new ArrayList();
Iterator it = alist.iterator();
while (it.hasNext()) {
HashMap hm = (HashMap) it.next();
DiscrepancyNoteBean eb = (DiscrepancyNoteBean) this.getEntityFromHashMap(hm);
eb.setEventName((String) hm.get("sed_name"));
eb.setEventStart((Date) hm.get("date_start"));
eb.setCrfName((String) hm.get("crf_name"));
eb.setSubjectName((String) hm.get("label"));
eb.setColumn((String) hm.get("column_name"));
eb.setEntityId(((Integer) hm.get("event_crf_id")).intValue());
al.add(eb);
}
return al;
}
public Collection findAllByEntityAndColumn(String entityName, int entityId, String column) {
this.setTypesExpected();
this.setTypeExpected(11, TypeNames.STRING); // ss.label
ArrayList alist = new ArrayList();
HashMap variables = new HashMap();
variables.put(new Integer(1), new Integer(entityId));
variables.put(new Integer(2), column);
if ("subject".equalsIgnoreCase(entityName)) {
alist = this.select(digester.getQuery("findAllBySubjectAndColumn"), variables);
} else if ("studySub".equalsIgnoreCase(entityName)) {
alist = this.select(digester.getQuery("findAllByStudySubjectAndColumn"), variables);
} else if ("eventCrf".equalsIgnoreCase(entityName)) {
this.setTypeExpected(12, TypeNames.DATE); // date_start
this.setTypeExpected(13, TypeNames.STRING); // sed_name
this.setTypeExpected(14, TypeNames.STRING); // crf_name
alist = this.select(digester.getQuery("findAllByEventCRFAndColumn"), variables);
} else if ("studyEvent".equalsIgnoreCase(entityName)) {
this.setTypeExpected(12, TypeNames.DATE); // date_start
this.setTypeExpected(13, TypeNames.STRING); // sed_name
alist = this.select(digester.getQuery("findAllByStudyEventAndColumn"), variables);
} else if ("itemData".equalsIgnoreCase(entityName)) {
this.setTypeExpected(12, TypeNames.DATE); // date_start
this.setTypeExpected(13, TypeNames.STRING); // sed_name
this.setTypeExpected(14, TypeNames.STRING); // crf_name
this.setTypeExpected(15, TypeNames.STRING); // item_name
alist = this.select(digester.getQuery("findAllByItemDataAndColumn"), variables);
}
ArrayList al = new ArrayList();
Iterator it = alist.iterator();
while (it.hasNext()) {
HashMap hm = (HashMap) it.next();
DiscrepancyNoteBean eb = (DiscrepancyNoteBean) this.getEntityFromHashMap(hm);
eb.setSubjectName((String) hm.get("label"));
if ("eventCrf".equalsIgnoreCase(entityName) || "itemData".equalsIgnoreCase(entityName)) {
eb.setEventName((String) hm.get("sed_name"));
eb.setEventStart((Date) hm.get("date_start"));
eb.setCrfName((String) hm.get("crf_name"));
eb.setEntityName((String) hm.get("item_name"));
} else if ("studyEvent".equalsIgnoreCase(entityName)) {
eb.setEventName((String) hm.get("sed_name"));
eb.setEventStart((Date) hm.get("date_start"));
}
if (fetchMapping) {
eb = findSingleMapping(eb);
}
al.add(eb);
}
return al;
}
public static DiscrepancyNoteBean createDiscrepancyNote(
ItemBean itemBean,
String message,
EventCRFBean eventCrfBean,
DisplayItemBean displayItemBean,
Integer parentId,
UserAccountBean uab,
DataSource ds,
StudyBean study) {
// DisplayItemBean displayItemBean) {
DiscrepancyNoteBean note = new DiscrepancyNoteBean();
StudySubjectDAO ssdao = new StudySubjectDAO(ds);
note.setDescription(message);
note.setDetailedNotes("Failed Validation Check");
note.setOwner(uab);
note.setCreatedDate(new Date());
note.setResolutionStatusId(ResolutionStatus.OPEN.getId());
note.setDiscrepancyNoteTypeId(DiscrepancyNoteType.FAILEDVAL.getId());
if (parentId != null) {
note.setParentDnId(parentId);
}
note.setField(itemBean.getName());
note.setStudyId(study.getId());
note.setEntityName(itemBean.getName());
note.setEntityType("ItemData");
note.setEntityValue(displayItemBean.getData().getValue());
note.setEventName(eventCrfBean.getName());
note.setEventStart(eventCrfBean.getCreatedDate());
note.setCrfName(displayItemBean.getEventDefinitionCRF().getCrfName());
StudySubjectBean ss = (StudySubjectBean) ssdao.findByPK(eventCrfBean.getStudySubjectId());
note.setSubjectName(ss.getName());
note.setEntityId(displayItemBean.getData().getId());
note.setColumn("value");
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(ds);
note = (DiscrepancyNoteBean) dndao.create(note);
// so that the below method works, need to set the entity above
// System.out.println("trying to create mapping with " + note.getId() + " " + note.getEntityId()
// + " " + note.getColumn() + " " + note.getEntityType());
dndao.createMapping(note);
// System.out.println("just created mapping");
return note;
}
public ArrayList findAllEntityByPK(String entityName, int noteId) {
this.setTypesExpected();
ArrayList alist = new ArrayList();
this.setTypeExpected(11, TypeNames.STRING); // ss.label
HashMap variables = new HashMap();
variables.put(new Integer(1), new Integer(noteId));
variables.put(new Integer(2), new Integer(noteId));
if ("subject".equalsIgnoreCase(entityName)) {
this.setTypeExpected(12, TypeNames.STRING); // column_name
alist = this.select(digester.getQuery("findAllSubjectByPK"), variables);
} else if ("studySub".equalsIgnoreCase(entityName)) {
this.setTypeExpected(12, TypeNames.STRING); // column_name
alist = this.select(digester.getQuery("findAllStudySubjectByPK"), variables);
} else if ("eventCrf".equalsIgnoreCase(entityName)) {
this.setTypeExpected(12, TypeNames.DATE); // date_start
this.setTypeExpected(13, TypeNames.STRING); // sed_name
this.setTypeExpected(14, TypeNames.STRING); // crf_name
this.setTypeExpected(15, TypeNames.STRING); // column_name
alist = this.select(digester.getQuery("findAllEventCRFByPK"), variables);
} else if ("studyEvent".equalsIgnoreCase(entityName)) {
this.setTypeExpected(12, TypeNames.DATE); // date_start
this.setTypeExpected(13, TypeNames.STRING); // sed_name
this.setTypeExpected(14, TypeNames.STRING); // column_name
alist = this.select(digester.getQuery("findAllStudyEventByPK"), variables);
} else if ("itemData".equalsIgnoreCase(entityName)) {
this.setTypeExpected(12, TypeNames.DATE); // date_start
this.setTypeExpected(13, TypeNames.STRING); // sed_name
this.setTypeExpected(14, TypeNames.STRING); // crf_name
this.setTypeExpected(15, TypeNames.STRING); // item_name
this.setTypeExpected(16, TypeNames.STRING); // value
// YW <<
this.setTypeExpected(17, TypeNames.INT); // item_data_id
this.setTypeExpected(18, TypeNames.INT); // item_id
// YW >>
alist = this.select(digester.getQuery("findAllItemDataByPK"), variables);
}
ArrayList al = new ArrayList();
Iterator it = alist.iterator();
while (it.hasNext()) {
HashMap hm = (HashMap) it.next();
DiscrepancyNoteBean eb = (DiscrepancyNoteBean) this.getEntityFromHashMap(hm);
if ("subject".equalsIgnoreCase(entityName) || "studySub".equalsIgnoreCase(entityName)) {
eb.setSubjectName((String) hm.get("label"));
eb.setColumn((String) hm.get("column_name"));
} else if ("eventCrf".equalsIgnoreCase(entityName)) {
eb.setSubjectName((String) hm.get("label"));
eb.setEventName((String) hm.get("sed_name"));
eb.setEventStart((Date) hm.get("date_start"));
eb.setCrfName((String) hm.get("crf_name"));
eb.setColumn((String) hm.get("column_name"));
} else if ("itemData".equalsIgnoreCase(entityName)) {
eb.setSubjectName((String) hm.get("label"));
eb.setEventName((String) hm.get("sed_name"));
eb.setEventStart((Date) hm.get("date_start"));
eb.setCrfName((String) hm.get("crf_name"));
eb.setEntityName((String) hm.get("item_name"));
eb.setEntityValue((String) hm.get("value"));
// YW <<
eb.setEntityId(((Integer) hm.get("item_data_id")).intValue());
eb.setItemId(((Integer) hm.get("item_id")).intValue());
// YW >>
} else if ("studyEvent".equalsIgnoreCase(entityName)) {
eb.setSubjectName((String) hm.get("label"));
eb.setEventName((String) hm.get("sed_name"));
eb.setEventStart((Date) hm.get("date_start"));
eb.setColumn((String) hm.get("column_name"));
}
if (fetchMapping) {
eb = findSingleMapping(eb);
}
al.add(eb);
}
return al;
}