public static double[][] getFixedRawComponent(
final int stitch, final int image, final int channel) throws IOException {
double[][] result = getRawComponent(stitch, image, channel);
fixDeadPixels(result, getDeadPixelsInComponent(channel));
return ImageOpsDouble.mul(
(result.length * result[0].length) / ImageOpsDouble.sum(result), result);
}
private static void initImageComponents(final int stitch, final int channel) throws IOException {
StitchStackProperties stack = getStitchStackProperties();
Map[] maps = map.Utils.getMapsFromStack(stack, stitch, channel, true);
double[][] lighting = Streams.readObject(DataTools.DIR + "light-dist-20");
double[] secondOrderLighting = new double[maps.length];
double[] directionalLighting = new double[2];
readSecondOrderLighting(
DataTools.DIR + "devig-second-order-n" + StitchInfo.SUFFICES[stitch] + ".txt",
secondOrderLighting,
directionalLighting);
int sx = stack.getImageSetProperties(0).getSize().getSx();
int sy = stack.getImageSetProperties(0).getSize().getSy();
double[] coords = new double[2];
double sum = 0;
double[][][] components = new double[maps.length][][];
for (int image = 0; image != components.length; ++image) {
components[image] = getRawComponent(stitch, image, channel);
for (int b = 0; b != sy / 2; ++b)
for (int a = 0; a != sx / 2; ++a) {
int x = 2 * a + channel % 2;
int y = 2 * b + channel / 2;
coords[0] = x;
coords[1] = y;
maps[image].map(coords, coords);
double directionalLight = 0;
for (int i = 0; i != 2; ++i) directionalLight += directionalLighting[i] * coords[i];
double light =
lighting[y][x] * secondOrderLighting[image] * Math.exp(0.5 * directionalLight);
components[image][b][a] /= light;
}
fixDeadPixels(components[image], getDeadPixelsInComponent(channel));
sum += ImageOpsDouble.mean(components[image]);
}
sum /= components.length;
for (int image = 0; image != components.length; ++image) {
components[image] = ImageOpsDouble.mul(1 / sum, components[image]);
String path =
String.format(
"%s/images/%d/%d/%d", Cache.CACHE.getAbsolutePath(), stitch, image, channel);
new File(path).getParentFile().mkdirs();
Streams.writeObject(path, components[image]);
}
}
