public String getCompileClassPath() { String compileClassPath = StringHelper.removeQuotesOS("\".") + File.pathSeparator + Oncotcap.getInstallDir() + "bin" + File.pathSeparator + Oncotcap.getProgramDir() + File.pathSeparator + Oncotcap.getInstallDir() + "lib" + File.separator + "tools.jar" + File.pathSeparator + Oncotcap.getInstallDir() + "lib" + File.separator + "protege.jar" + File.pathSeparator + FileHelper.sansTrailingSeparator(Oncotcap.getTempPath()); // packageBaseName; String xtraPath = Oncotcap.getExtraCompilerClassPath().trim(); if (xtraPath != null && !xtraPath.equals("")) { if (!xtraPath.startsWith(File.pathSeparator)) compileClassPath = compileClassPath + File.pathSeparator; compileClassPath = compileClassPath + xtraPath; } String strPluginDir = Oncotcap.getInstallDir() + "plugins"; if (FileHelper.fileExists(strPluginDir)) { strPluginDir = strPluginDir + File.separator; File pluginDir = new File(strPluginDir); { if (pluginDir.isDirectory()) { File[] jars = pluginDir.listFiles(); if (jars != null) { for (int n = 0; n < jars.length; n++) { if (jars[n].getName().endsWith(".jar")) compileClassPath = compileClassPath + File.pathSeparator + strPluginDir + jars[n].getName(); } } } } } compileClassPath = compileClassPath + StringHelper.removeQuotesOS("\""); return (compileClassPath); }
/* Use this constructor to run an existing model externally to OncBrowser. * So far, it is not used (april 2006 - rd). */ public PackageDir(String dirName) { File pd = new File(dirName); try { if (pd.exists() && pd.isDirectory()) { File[] files = pd.listFiles(); for (int i = 0; i < files.length; i++) System.out.println("PackageDir: " + files[i]); } packageName = dirName; packagePath = new String(Oncotcap.getTempPath() + packageName); packagePath = packagePath.trim(); if (!packagePath.endsWith(File.separator)) packagePath = packagePath.concat(File.separator); } catch (SecurityException e) { Logger.log("Error can not create temporary directory"); } }
public PackageDir(boolean numbered) throws TempDirFullException { // this should be rewritten to take into account that multiple // copies of the program are running and trying to create these // directories on the same machine. Possibly, a file that can // be locked that contains the next incremental name, if the // file is locked, spin on it for 10 seconds or so. File pd; if (numbered) { pd = new File(nextName()); int trys = 1; while (pd.exists() && trys <= tempDirLimit) { pd = new File(nextName()); trys++; } if (trys > tempDirLimit) throw (new TempDirFullException()); } else { pd = new File(standardName()); } try { if (pd.exists()) { if (pd.isDirectory()) { File[] files = pd.listFiles(); for (int i = 0; i < files.length; i++) files[i].delete(); } } else if (!pd.mkdir()) { Logger.log("PackageDir(): error can not create temporary directory " + pd); packageName = null; packagePath = null; } packagePath = packagePath.trim(); if (!packagePath.endsWith(File.separator)) packagePath = packagePath.concat(File.separator); } catch (SecurityException e) { Logger.log("Error can not create temporary directory"); } }