private void doMakePathsRelative(BibtexEntry entry, NamedCompound ce) {
String oldValue = entry.getField(Globals.FILE_FIELD);
if (oldValue == null) {
return;
}
FileListTableModel flModel = new FileListTableModel();
flModel.setContent(oldValue);
if (flModel.getRowCount() == 0) {
return;
}
boolean changed = false;
for (int i = 0; i < flModel.getRowCount(); i++) {
FileListEntry flEntry = flModel.getEntry(i);
String oldFileName = flEntry.getLink();
String newFileName =
FileUtil.shortenFileName(
new File(oldFileName), panel.metaData().getFileDirectory(Globals.FILE_FIELD))
.toString();
if (!oldFileName.equals(newFileName)) {
flEntry.setLink(newFileName);
changed = true;
}
}
if (changed) {
String newValue = flModel.getStringRepresentation();
assert (!oldValue.equals(newValue));
entry.setField(Globals.FILE_FIELD, newValue);
ce.addEdit(new UndoableFieldChange(entry, Globals.FILE_FIELD, oldValue, newValue));
}
}
@Override
public String format(String field) {
FileListTableModel tableModel = new FileListTableModel();
if (field == null) {
return "";
}
tableModel.setContent(field);
String link = null;
if (fileType == null) {
// No file type specified. Simply take the first link.
if (tableModel.getRowCount() > 0) {
link = tableModel.getEntry(0).getLink();
}
} else {
// A file type is specified:
for (int i = 0; i < tableModel.getRowCount(); i++) {
FileListEntry flEntry = tableModel.getEntry(i);
if (flEntry.getType().getName().toLowerCase().equals(fileType)) {
link = flEntry.getLink();
break;
}
}
}
if (link == null) {
return "";
}
String[] dirs;
// We need to resolve the file directory from the database's metadata,
// but that is not available from a formatter. Therefore, as an
// ugly hack, the export routine has set a global variable before
// starting the export, which contains the database's file directory:
if (Globals.prefs.fileDirForDatabase != null) {
dirs = Globals.prefs.fileDirForDatabase;
} else {
dirs = new String[] {Globals.prefs.get(Globals.FILE_FIELD + "Directory")};
}
File f = FileUtil.expandFilename(link, dirs);
/*
* Stumbled over this while investigating
*
* https://sourceforge.net/tracker/index.php?func=detail&aid=1469903&group_id=92314&atid=600306
*/
if (f != null) {
try {
return f.getCanonicalPath(); // f.toURI().toString();
} catch (IOException e) {
e.printStackTrace();
return f.getPath();
}
} else {
return link;
}
}
private static void fixWrongFileEntries(BibtexEntry entry, NamedCompound ce) {
String oldValue = entry.getField(Globals.FILE_FIELD);
if (oldValue == null) {
return;
}
FileListTableModel flModel = new FileListTableModel();
flModel.setContent(oldValue);
if (flModel.getRowCount() == 0) {
return;
}
boolean changed = false;
for (int i = 0; i < flModel.getRowCount(); i++) {
FileListEntry flEntry = flModel.getEntry(i);
String link = flEntry.getLink();
String description = flEntry.getDescription();
if ("".equals(link) && (!"".equals(description))) {
// link and description seem to be switched, quickly fix that
flEntry.setLink(flEntry.getDescription());
flEntry.setDescription("");
changed = true;
}
}
if (changed) {
String newValue = flModel.getStringRepresentation();
assert (!oldValue.equals(newValue));
entry.setField(Globals.FILE_FIELD, newValue);
ce.addEdit(new UndoableFieldChange(entry, Globals.FILE_FIELD, oldValue, newValue));
}
}
public void actionPerformed(ActionEvent event) {
int selected = editor.getSelectedRow();
if (selected == -1) return;
FileListEntry flEntry = editor.getTableModel().getEntry(selected);
// Check if the current file exists:
String ln = flEntry.getLink();
boolean httpLink = ln.toLowerCase().startsWith("http");
if (httpLink) {
// TODO: notify that this operation cannot be done on remote links
}
// Get an absolute path representation:
String dir = frame.basePanel().metaData().getFileDirectory(GUIGlobals.FILE_FIELD);
if ((dir == null) || (dir.trim().length() == 0) || !(new File(dir)).exists()) {
JOptionPane.showMessageDialog(
frame,
Globals.lang("File_directory_is_not_set_or_does_not_exist!"),
Globals.lang("Move/Rename file"),
JOptionPane.ERROR_MESSAGE);
return;
}
File file = new File(ln);
if (!file.isAbsolute()) {
file = Util.expandFilename(ln, new String[] {dir});
}
if ((file != null) && file.exists()) {
// Ok, we found the file. Now get a new name:
String extension = null;
if (flEntry.getType() != null) extension = "." + flEntry.getType().getExtension();
File newFile = null;
boolean repeat = true;
while (repeat) {
repeat = false;
String chosenFile;
if (toFileDir) {
String suggName = eEditor.getEntry().getCiteKey() + extension;
CheckBoxMessage cbm =
new CheckBoxMessage(
Globals.lang("Move file to file directory?"),
Globals.lang("Rename to '%0'", suggName),
Globals.prefs.getBoolean("renameOnMoveFileToFileDir"));
int answer;
// Only ask about renaming file if the file doesn't have the proper name already:
if (!suggName.equals(file.getName()))
answer =
JOptionPane.showConfirmDialog(
frame, cbm, Globals.lang("Move/Rename file"), JOptionPane.YES_NO_OPTION);
else
answer =
JOptionPane.showConfirmDialog(
frame,
Globals.lang("Move file to file directory?"),
Globals.lang("Move/Rename file"),
JOptionPane.YES_NO_OPTION);
if (answer != JOptionPane.YES_OPTION) return;
Globals.prefs.putBoolean("renameOnMoveFileToFileDir", cbm.isSelected());
StringBuilder sb = new StringBuilder(dir);
if (!dir.endsWith(File.separator)) sb.append(File.separator);
if (cbm.isSelected()) {
// Rename:
sb.append(suggName);
} else {
// Do not rename:
sb.append(file.getName());
}
chosenFile = sb.toString();
} else {
chosenFile =
FileDialogs.getNewFile(frame, file, extension, JFileChooser.SAVE_DIALOG, false);
}
if (chosenFile == null) {
return; // cancelled
}
newFile = new File(chosenFile);
// Check if the file already exists:
if (newFile.exists()
&& (JOptionPane.showConfirmDialog(
frame,
"'" + newFile.getName() + "' " + Globals.lang("exists. Overwrite file?"),
Globals.lang("Move/Rename file"),
JOptionPane.OK_CANCEL_OPTION)
!= JOptionPane.OK_OPTION)) {
if (!toFileDir) repeat = true;
else return;
}
}
if (!newFile.equals(file)) {
try {
boolean success = file.renameTo(newFile);
if (!success) {
success = Util.copyFile(file, newFile, true);
}
if (success) {
// Remove the original file:
file.delete();
// Relativise path, if possible.
String canPath = (new File(dir)).getCanonicalPath();
if (newFile.getCanonicalPath().startsWith(canPath)) {
if ((newFile.getCanonicalPath().length() > canPath.length())
&& (newFile.getCanonicalPath().charAt(canPath.length()) == File.separatorChar))
flEntry.setLink(newFile.getCanonicalPath().substring(1 + canPath.length()));
else flEntry.setLink(newFile.getCanonicalPath().substring(canPath.length()));
} else flEntry.setLink(newFile.getCanonicalPath());
eEditor.updateField(editor);
JOptionPane.showMessageDialog(
frame,
Globals.lang("File moved"),
Globals.lang("Move/Rename file"),
JOptionPane.INFORMATION_MESSAGE);
} else {
JOptionPane.showMessageDialog(
frame,
Globals.lang("Move file failed"),
Globals.lang("Move/Rename file"),
JOptionPane.ERROR_MESSAGE);
}
} catch (SecurityException ex) {
ex.printStackTrace();
JOptionPane.showMessageDialog(
frame,
Globals.lang("Could not move file") + ": " + ex.getMessage(),
Globals.lang("Move/Rename file"),
JOptionPane.ERROR_MESSAGE);
} catch (IOException ex) {
ex.printStackTrace();
JOptionPane.showMessageDialog(
frame,
Globals.lang("Could not move file") + ": " + ex.getMessage(),
Globals.lang("Move/Rename file"),
JOptionPane.ERROR_MESSAGE);
}
}
} else {
// File doesn't exist, so we can't move it.
JOptionPane.showMessageDialog(
frame,
Globals.lang("Could not find file '%0'.", flEntry.getLink()),
Globals.lang("File not found"),
JOptionPane.ERROR_MESSAGE);
}
}
public String format(String field) {
StringBuilder sb = new StringBuilder();
// Build the table model containing the links:
FileListTableModel tableModel = new FileListTableModel();
if (field == null) return "";
tableModel.setContent(field);
int piv = 1; // counter for relevant iterations
for (int i = 0; i < tableModel.getRowCount(); i++) {
FileListEntry flEntry = tableModel.getEntry(i);
// Use this entry if we don't discriminate on types, or if the type fits:
if ((fileType == null) || flEntry.getType().getName().toLowerCase().equals(fileType)) {
for (FormatEntry entry : format) {
switch (entry.getType()) {
case STRING:
sb.append(entry.getString());
break;
case ITERATION_COUNT:
sb.append(String.valueOf(piv));
break;
case FILE_PATH:
if (flEntry.getLink() == null) break;
String dir;
// We need to resolve the file directory from the database's metadata,
// but that is not available from a formatter. Therefore, as an
// ugly hack, the export routine has set a global variable before
// starting the export, which contains the database's file directory:
if (Globals.prefs.fileDirForDatabase != null) dir = Globals.prefs.fileDirForDatabase;
else dir = Globals.prefs.get(GUIGlobals.FILE_FIELD + "Directory");
File f = Util.expandFilename(flEntry.getLink(), new String[] {dir});
/*
* Stumbled over this while investigating
*
* https://sourceforge.net/tracker/index.php?func=detail&aid=1469903&group_id=92314&atid=600306
*/
if (f != null) {
try {
sb.append(replaceStrings(f.getCanonicalPath())); // f.toURI().toString();
} catch (IOException ex) {
ex.printStackTrace();
sb.append(replaceStrings(f.getPath()));
}
} else {
sb.append(replaceStrings(flEntry.getLink()));
}
break;
case RELATIVE_FILE_PATH:
if (flEntry.getLink() == null) break;
/*
* Stumbled over this while investigating
*
* https://sourceforge.net/tracker/index.php?func=detail&aid=1469903&group_id=92314&atid=600306
*/
sb.append(replaceStrings(flEntry.getLink())); // f.toURI().toString();
break;
case FILE_EXTENSION:
if (flEntry.getLink() == null) break;
int index = flEntry.getLink().lastIndexOf('.');
if ((index >= 0) && (index < flEntry.getLink().length() - 1))
sb.append(replaceStrings(flEntry.getLink().substring(index + 1)));
break;
case FILE_TYPE:
sb.append(replaceStrings(flEntry.getType().getName()));
break;
case FILE_DESCRIPTION:
sb.append(replaceStrings(flEntry.getDescription()));
break;
}
}
piv++; // update counter
}
}
return sb.toString();
}
public void run() {
if (!goOn) return;
for (int i = 0; i < entries.length; i++) {
BibtexEntry entry = entries[i];
// Make a list of all PDFs linked from this entry:
List<File> files = new ArrayList<File>();
// First check the (legacy) "pdf" field:
String pdf = entry.getField("pdf");
String dir = panel.metaData().getFileDirectory("pdf");
File f = Util.expandFilename(pdf, new String[] {dir, "."});
if (f != null) files.add(f);
// Then check the "file" field:
dir = panel.metaData().getFileDirectory(GUIGlobals.FILE_FIELD);
String field = entry.getField(GUIGlobals.FILE_FIELD);
if (field != null) {
FileListTableModel tm = new FileListTableModel();
tm.setContent(field);
for (int j = 0; j < tm.getRowCount(); j++) {
FileListEntry flEntry = tm.getEntry(j);
if ((flEntry.getType() != null)
&& (flEntry.getType().getName().toLowerCase().equals("pdf"))) {
f = Util.expandFilename(flEntry.getLink(), new String[] {dir, "."});
if (f != null) files.add(f);
}
}
}
optDiag.progressArea.append(entry.getCiteKey() + "\n");
if (files.size() == 0) {
skipped++;
optDiag.progressArea.append(" " + Globals.lang("Skipped - No PDF linked") + ".\n");
} else
for (File file : files) {
if (!file.exists()) {
skipped++;
optDiag.progressArea.append(
" " + Globals.lang("Skipped - PDF does not exist") + ":\n");
optDiag.progressArea.append(" " + file.getPath() + "\n");
} else {
try {
XMPUtil.writeXMP(file, entry, database);
optDiag.progressArea.append(" " + Globals.lang("Ok") + ".\n");
entriesChanged++;
} catch (Exception e) {
optDiag.progressArea.append(
" " + Globals.lang("Error while writing") + " '" + file.getPath() + "':\n");
optDiag.progressArea.append(" " + e.getLocalizedMessage() + "\n");
errors++;
}
}
}
if (optDiag.canceled) {
optDiag.progressArea.append("\n" + Globals.lang("Operation canceled.\n"));
break;
}
}
optDiag.progressArea.append(
"\n"
+ Globals.lang(
"Finished writing XMP for %0 file (%1 skipped, %2 errors).",
String.valueOf(entriesChanged), String.valueOf(skipped), String.valueOf(errors)));
optDiag.done();
}