@Override
public boolean equals(Object obj) {
if (obj == this) {
return true;
}
Datum instance;
if (obj instanceof Datum) {
instance = (Datum) obj;
} else {
return false;
}
return myName.equals(instance.getName())
&& (myData == instance.getData())
&& (myComment.equals(instance.getComment()));
}
public DataSet performFunction(DataSet input) {
List data = input.getDataSet();
int numSaveFiles = 0;
if (mySaveFiles != null) {
numSaveFiles = mySaveFiles.length;
}
if ((numSaveFiles != 0) && (numSaveFiles != 1) && (numSaveFiles != data.size())) {
throw new IllegalStateException(
"ExportMultiplePlugin: performFunction: number of save files should be either 0, 1 or number of input data sets.");
}
if ((myFileTypes != null) && (myFileTypes.length != 0)) {
if ((myFileTypes.length != 1) && (myFileTypes.length != data.size())) {
throw new IllegalStateException(
"ExportMultiplePlugin: performFunction: number of files types should be either 0, 1 or number of input data sets.");
}
}
for (int i = 0, n = data.size(); i < n; i++) {
Datum datum = (Datum) data.get(i);
DataSet current = new DataSet(datum, input.getCreator());
if (numSaveFiles == 0) {
myExportPlugin.setSaveFile(datum.getName());
} else if (numSaveFiles == 1) {
String temp;
if (data.size() == 1) {
temp = mySaveFiles[0];
} else {
temp = mySaveFiles[0].replaceFirst("\\.", (i + 1) + ".");
if (temp.length() == mySaveFiles[0].length()) {
temp = mySaveFiles[0] + (i + 1);
}
}
myExportPlugin.setSaveFile(temp);
} else {
myExportPlugin.setSaveFile(mySaveFiles[i]);
}
if ((myFileTypes == null) || (myFileTypes.length == 0)) {
// do nothing
} else if (myFileTypes.length == 1) {
myExportPlugin.setAlignmentFileType(myFileTypes[0]);
} else {
myExportPlugin.setAlignmentFileType(myFileTypes[i]);
}
DataSet filename = myExportPlugin.performFunction(current);
myLogger.info(
"Datum: "
+ datum.getName()
+ " Written to: "
+ filename.getDataOfType(String.class).get(0).getData());
}
return null;
}