@Override
public void paint(Graphics g) {
super.paint(g);
Graphics2D g2 = (Graphics2D) g;
g2.setRenderingHint(
RenderingHints.KEY_INTERPOLATION, RenderingHints.VALUE_INTERPOLATION_BILINEAR);
g2.setRenderingHint(RenderingHints.KEY_RENDERING, RenderingHints.VALUE_RENDER_QUALITY);
g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON);
int v = value;
boolean is_ng = false;
if (v > 999) v = 999;
if (v < 0) {
v *= -1;
is_ng = true;
if (v > 99) v = 99;
}
for (int i = 2, p = 1; i >= 0; i--, v /= 10) {
BufferedImage r = GameResource.sevenSegmentDigits[v % 10];
g2.drawImage(r, i * 15 + 5, 5, 15, 30, this);
}
if (is_ng) {
BufferedImage r = GameResource.sevenSegmentDigits[10];
g2.drawImage(r, 0 * 15 + 5, 5, 15, 30, this);
}
}
@Override
public final void paint(Graphics g) {
super.paint(g);
Graphics2D g2 = (Graphics2D) g;
Composite old = g2.getComposite(); // Store non-transparent composite
g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER, 0.4f)); // 40% transparency
g2.drawRect(0, 0, getWidth() - 1, getHeight() - 1);
Font drawFont = g2.getFont();
g2.setFont(notificationFont);
adaptDimensions();
int textX = 5;
int textY = (getHeight() / 2 + 3);
g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER, 0.7f)); // 70% transparency
g2.drawString(message, textX, textY);
g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER, 0.05f)); // 5% transparency
g2.setColor(java.awt.Color.blue);
g2.fillRect(0, 0, this.getWidth() - 1, this.getHeight() - 1);
g2.setComposite(old);
g2.setFont(drawFont);
}
@Override
public void paint(Graphics g) {
onResize();
double speed = this.speed;
float rotation = 0;
Graphics2D g2d = (Graphics2D) g;
drawBackground(g2d);
// needle
g2d.translate(getNeedleLocation().x, getNeedleLocation().y); // translate begin middle
drawFrom00Center(g2d);
g2d.rotate(getNeedleStartRotation()); // rotate begin needle
rotation += getNeedleStartRotation();
drawBackgroundWithNeedleStartRotation(g2d);
g2d.rotate(step1Speed * speed); // rotate begin speed
rotation += step1Speed * speed;
drawNeedle(g2d);
drawOnNeedleSpeedRotation(g2d);
g2d.rotate(-rotation); // rotate end,rotate end
g2d.translate(-getNeedleLocation().x, -getNeedleLocation().y); // //translate end
rotation = 0;
super.paint(g2d);
}
@Override
public void paint(Graphics g) {
super.paint(g);
// test1(g);
// test2(g);
test3(g);
}
@Override
public void paint(Graphics g) {
if (isGLDrawing() && drawableComponent != null && canvas != null) {
canvas.display();
} else {
super.paint(g);
}
}
public void paint(Graphics g) {
if (g instanceof Graphics2D) {
Graphics2D g2 = (Graphics2D) g;
g2.setRenderingHint(
RenderingHints.KEY_TEXT_ANTIALIASING, RenderingHints.VALUE_TEXT_ANTIALIAS_ON);
g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON);
}
super.paint(g);
}
private BufferedImage exportImageFromComponent(JComponent component) {
BufferedImage image =
new BufferedImage(component.getWidth(), component.getHeight(), BufferedImage.TYPE_INT_RGB);
Graphics gx = image.getGraphics();
component.paint(gx);
gx.dispose();
return image;
}
public void paint(Graphics g) {
if (comp != null) {
width = comp.getWidth() / 6;
height = comp.getHeight() * 2 / 3;
}
g.setColor(bgColor);
g.fillRect(x, y, width, height);
g.setColor(fgColor);
g.setFont(font);
g.drawString(strTray, x / 2 + width / 2, y + height + 10);
super.paint(g);
}
/*
* Create a BufferedImage for Swing components.
* All or part of the component can be captured to an image.
*
* @param component Swing component to create image from
* @param region The region of the component to be captured to an image
* @param fileName name of file to be created or null
* @return image the image for the given region
* @exception IOException if an error occurs during writing
*/
public static BufferedImage createImage(JComponent component, Rectangle region, String fileName)
throws IOException {
boolean opaqueValue = component.isOpaque();
component.setOpaque(true);
BufferedImage image =
new BufferedImage(region.width, region.height, BufferedImage.TYPE_INT_RGB);
Graphics2D g2d = image.createGraphics();
g2d.setClip(region);
component.paint(g2d);
g2d.dispose();
component.setOpaque(opaqueValue);
ScreenCapture.writeImage(image, fileName);
return image;
}
public void paint(Graphics g) {
super.paint(g);
if (thumbnail != null) {
int x = getWidth() / 2 - thumbnail.getIconWidth() / 2;
int y = getHeight() / 2 - thumbnail.getIconHeight() / 2;
if (y < 0) {
y = 0;
}
if (x < 5) {
x = 5;
}
thumbnail.paintIcon(this, g, x, y);
}
}
private void write(JComponent myComponent, OutputStream out) throws Exception {
int imgWidth = (int) myComponent.getSize().getWidth(),
imgHeight = (int) myComponent.getSize().getHeight();
Dimension size = new Dimension(imgWidth, imgHeight);
BufferedImage myImage = new BufferedImage(size.width, size.height, BufferedImage.TYPE_INT_RGB);
Graphics2D g2 = myImage.createGraphics();
myComponent.paint(g2);
try {
JPEGImageEncoder encoder = JPEGCodec.createJPEGEncoder(out);
encoder.encode(myImage);
out.close();
} catch (Exception e) {
throw new Exception("GRAPHICS ERROR,CANNOT CREATE JPEG FORMAT");
}
}
@Override
public void paint(Graphics g) {
// always paint background color; must happen before any controlPaint; extract to separate
// method if override needed
Graphics2D g2 = (Graphics2D) g;
g2.setBackground(this.getBackground());
RectAdp clipRect = GxwCore_lang.XtoRectAdp(g2.getClipBounds());
g2.clearRect(clipRect.X(), clipRect.Y(), clipRect.Width(), clipRect.Height());
if (host.PaintCbk(
PaintArgs.new_(
GfxAdpBase.new_(g2),
clipRect))) // ClipRect not used by any clients; implement when necessary
super.paint(
g); // Reevaluate if necessary: super.paint might need to (a) always happen and (b) go
// before PaintCbk (had issues with drawing text on images)
}
public void run() {
try {
BufferedImage bufferedImage =
new BufferedImage(_com.getWidth(), _com.getHeight(), BufferedImage.TYPE_INT_RGB);
// Create a graphics contents on the buffered image
Graphics2D g2d = bufferedImage.createGraphics();
_com.paint(g2d);
File file = new File(_name);
ImageIO.write(bufferedImage, "jpg", file);
} catch (Exception ex) {
}
}
public void paint(Graphics g) {
Graphics2D gr = (Graphics2D) g;
super.paint(g);
Rectangle bounds = scene.getBounds();
Dimension size = getSize();
double sx = bounds.width > 0 ? (double) size.width / bounds.width : 0.0;
double sy = bounds.width > 0 ? (double) size.height / bounds.height : 0.0;
double scale = Math.min(sx, sy);
int vw = (int) (scale * bounds.width);
int vh = (int) (scale * bounds.height);
int vx = (size.width - vw) / 2;
int vy = (size.height - vh) / 2;
if (image == null || vw != imageWidth || vh != imageHeight) {
imageWidth = vw;
imageHeight = vh;
image = this.createImage(imageWidth, imageHeight);
Graphics2D ig = (Graphics2D) image.getGraphics();
ig.scale(scale, scale);
scene.setRealZoomFactor(scale);
scene.paint(ig);
scene.setRealZoomFactor(0.0);
}
gr.drawImage(image, vx, vy, this);
JComponent component = scene.getView();
double zoomFactor = scene.getZoomFactor();
Rectangle viewRectangle = component != null ? component.getVisibleRect() : null;
if (viewRectangle != null) {
Rectangle window =
new Rectangle(
(int) ((double) viewRectangle.x * scale / zoomFactor),
(int) ((double) viewRectangle.y * scale / zoomFactor),
(int) ((double) viewRectangle.width * scale / zoomFactor),
(int) ((double) viewRectangle.height * scale / zoomFactor));
window.translate(vx, vy);
gr.setColor(new Color(200, 200, 200, 128));
gr.fill(window);
gr.setColor(Color.BLACK);
gr.drawRect(window.x, window.y, window.width - 1, window.height - 1);
}
}
@Override
public void paint(Graphics g) {
super.paint(g);
Graphics2D g2 = (Graphics2D) g;
g2.setRenderingHint(RenderingHints.KEY_RENDERING, RenderingHints.VALUE_RENDER_QUALITY);
g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON);
int textWidth = g2.getFontMetrics().stringWidth("00:00.00");
int fontSize = getFont().getSize() * getWidth() / textWidth;
g2.setFont(getFont().deriveFont((float) Math.min(fontSize, getHeight())));
Rectangle2D bounds = g2.getFontMetrics().getStringBounds(this.text, g2);
g2.drawString(
this.text,
(int) ((getWidth() - bounds.getWidth()) / 2 - bounds.getX()),
(int) ((getHeight() - bounds.getHeight()) / 2 - bounds.getY()));
}
/* Methods for DragGestureListener */
public final void dragGestureRecognized(DragGestureEvent dge) {
TreePath path = tree.getSelectionPath();
if (path != null) {
draggedPath = path;
draggedNodeParentPath = path.getParentPath();
if (drawImage) {
Rectangle pathBounds = tree.getPathBounds(path); // getpathbounds of selectionpath
JComponent lbl =
(JComponent)
tree.getCellRenderer()
.getTreeCellRendererComponent(
tree,
draggedPath.getLastPathComponent(),
false,
tree.isExpanded(path),
false,
0,
false); // returning the label
lbl.setBounds(pathBounds); // setting bounds to lbl
image =
new BufferedImage(
lbl.getWidth(),
lbl.getHeight(),
java.awt.image.BufferedImage
.TYPE_INT_ARGB_PRE); // buffered image reference passing the label's ht and
// width
Graphics2D graphics = image.createGraphics(); // creating the graphics for buffered image
graphics.setComposite(
AlphaComposite.getInstance(
AlphaComposite.SRC_OVER, 0.5f)); // Sets the Composite for the Graphics2D context
lbl.setOpaque(false);
lbl.paint(graphics); // painting the graphics to label
graphics.dispose();
}
dragSource.startDrag(
dge,
DragSource.DefaultMoveNoDrop,
image,
new Point(0, 0),
new TransferableNode(draggedPath),
this);
}
}
void test(JComponent c) {
c.setEnabled(false);
c.setOpaque(true);
c.setBackground(TEST_COLOR);
c.setBorder(null);
Dimension size = c.getPreferredSize();
c.setBounds(0, 0, size.width, size.height);
BufferedImage image = new BufferedImage(size.width, size.height, BufferedImage.TYPE_INT_ARGB);
c.paint(image.getGraphics());
int rgb = TEST_COLOR.getRGB();
for (int i = 0; i < size.height; i++) {
for (int j = 0; j < size.width; j++) {
if (image.getRGB(j, i) != rgb) {
throw new RuntimeException(String.format("Color mismatch at [%d, %d]", j, i));
}
}
}
}
private void checkResult(@TestDataFile String expectedResultFileName) throws IOException {
myEditor.getSettings().setAdditionalLinesCount(0);
myEditor.getSettings().setAdditionalColumnsCount(1);
JComponent editorComponent = myEditor.getContentComponent();
Dimension size = editorComponent.getPreferredSize();
editorComponent.setSize(size);
//noinspection UndesirableClassUsage
BufferedImage image = new BufferedImage(size.width, size.height, BufferedImage.TYPE_INT_ARGB);
BitmapFont bitmapFont = BitmapFont.loadFromFile(getFontFile());
MyGraphics graphics = new MyGraphics(image.createGraphics(), bitmapFont);
try {
editorComponent.paint(graphics);
} finally {
graphics.dispose();
}
File fileWithExpectedResult = getTestDataFile(expectedResultFileName);
if (OVERWRITE_TESTDATA) {
ImageIO.write(image, "png", fileWithExpectedResult);
System.out.println("File " + fileWithExpectedResult.getPath() + " created.");
}
if (fileWithExpectedResult.exists()) {
BufferedImage expectedResult = ImageIO.read(fileWithExpectedResult);
if (expectedResult.getWidth() != image.getWidth()) {
fail("Unexpected image width", fileWithExpectedResult, image);
}
if (expectedResult.getHeight() != image.getHeight()) {
fail("Unexpected image height", fileWithExpectedResult, image);
}
for (int i = 0; i < expectedResult.getWidth(); i++) {
for (int j = 0; j < expectedResult.getHeight(); j++) {
if (expectedResult.getRGB(i, j) != image.getRGB(i, j)) {
fail("Unexpected image contents", fileWithExpectedResult, image);
}
}
}
} else {
ImageIO.write(image, "png", fileWithExpectedResult);
fail("Missing test data created: " + fileWithExpectedResult.getPath());
}
}
@Override
public final void paint(Graphics g) {
super.paint(g);
Graphics2D g2 = (Graphics2D) g;
if (translateForExport) {
g2.translate(Constants.EXPORT_DISPLACEMENT, Constants.EXPORT_DISPLACEMENT);
}
boolean selected = getDiagramHandler().getDrawPanel().getSelector().isSelected(this);
if (selected) {
if (SharedConfig.getInstance().isDev_mode()) {
Color oldColor = g2.getColor();
g2.setColor(Converter.convert(ColorOwn.BLACK));
String text = "Type: " + getClass().getName();
g2.drawString(
text,
getWidth() - (int) getDiagramHandler().getFontHandler().getTextWidth(text),
getHeight() - 5);
g2.setColor(oldColor);
}
if (isDeprecated()) {
Color oldColor = g2.getColor();
g2.setColor(
Converter.convert(ColorOwn.RED.transparency(Transparency.SELECTION_BACKGROUND)));
g2.fillRect(0, 0, getWidth(), getHeight());
g2.setColor(oldColor);
g2.setColor(Converter.convert(ColorOwn.RED.transparency(Transparency.DEPRECATED_WARNING)));
g2.drawString("DEPRECATED ELEMENT", 10, 15);
g2.drawString("WILL SOON BE REMOVED", 10, 30);
}
fgColor = Converter.convert(ColorOwn.SELECTION_FG);
if (SharedConfig.getInstance().isShow_stickingpolygon()) {
drawStickingPolygon(g2);
}
} else {
fgColor = fgColorBase;
}
updateModelFromText();
paintEntity(g2);
}
public final void paint(Graphics g) {
super.paint(g);
}
private EditorFragmentComponent(
EditorEx editor, int startLine, int endLine, boolean showFolding, boolean showGutter) {
Document doc = editor.getDocument();
final int endOffset =
endLine < doc.getLineCount() ? doc.getLineEndOffset(endLine) : doc.getTextLength();
int textWidth =
Math.min(
editor.getMaxWidthInRange(doc.getLineStartOffset(startLine), endOffset),
ScreenUtil.getScreenRectangle(1, 1).width);
LOG.assertTrue(
textWidth > 0,
"TextWidth: " + textWidth + "; startLine:" + startLine + "; endLine:" + endLine + ";");
FoldingModelEx foldingModel = editor.getFoldingModel();
boolean isFoldingEnabled = foldingModel.isFoldingEnabled();
if (!showFolding) {
foldingModel.setFoldingEnabled(false);
}
Point p1 = editor.logicalPositionToXY(new LogicalPosition(startLine, 0));
Point p2 = editor.logicalPositionToXY(new LogicalPosition(Math.max(endLine, startLine + 1), 0));
int y1 = p1.y;
int y2 = p2.y;
int height = y2 - y1 == 0 ? editor.getLineHeight() : y2 - y1;
LOG.assertTrue(
height > 0,
"Height: "
+ height
+ "; startLine:"
+ startLine
+ "; endLine:"
+ endLine
+ "; p1:"
+ p1
+ "; p2:"
+ p2);
int savedScrollOffset = editor.getScrollingModel().getHorizontalScrollOffset();
if (savedScrollOffset > 0) {
editor.stopOptimizedScrolling();
editor.getScrollingModel().scrollHorizontally(0);
}
final Image textImage = new BufferedImage(textWidth, height, BufferedImage.TYPE_INT_RGB);
Graphics textGraphics = textImage.getGraphics();
final JComponent rowHeader;
final Image markersImage;
if (showGutter) {
rowHeader = editor.getGutterComponentEx();
markersImage =
new BufferedImage(Math.max(1, rowHeader.getWidth()), height, BufferedImage.TYPE_INT_RGB);
Graphics markerGraphics = markersImage.getGraphics();
markerGraphics.translate(0, -y1);
markerGraphics.setClip(0, y1, rowHeader.getWidth(), height);
markerGraphics.setColor(getBackgroundColor(editor));
markerGraphics.fillRect(0, y1, rowHeader.getWidth(), height);
rowHeader.paint(markerGraphics);
} else {
rowHeader = null;
markersImage = null;
}
textGraphics.translate(0, -y1);
textGraphics.setClip(0, y1, textWidth, height);
final boolean wasVisible = editor.setCaretVisible(false);
editor.setPurePaintingMode(true);
try {
editor.getContentComponent().paint(textGraphics);
} finally {
editor.setPurePaintingMode(false);
}
if (wasVisible) {
editor.setCaretVisible(true);
}
if (!showFolding) {
foldingModel.setFoldingEnabled(isFoldingEnabled);
}
if (savedScrollOffset > 0) {
editor.stopOptimizedScrolling();
editor.getScrollingModel().scrollHorizontally(savedScrollOffset);
}
JComponent component =
new JComponent() {
public Dimension getPreferredSize() {
return new Dimension(
textImage.getWidth(null) + (markersImage == null ? 0 : markersImage.getWidth(null)),
textImage.getHeight(null));
}
protected void paintComponent(Graphics graphics) {
if (markersImage != null) {
graphics.drawImage(markersImage, 0, 0, null);
graphics.drawImage(textImage, rowHeader.getWidth(), 0, null);
} else {
graphics.drawImage(textImage, 0, 0, null);
}
}
};
setLayout(new BorderLayout());
add(component);
final Color borderColor =
editor.getColorsScheme().getColor(EditorColors.SELECTED_TEARLINE_COLOR);
Border outsideBorder = BorderFactory.createLineBorder(borderColor, 1);
Border insideBorder = BorderFactory.createEmptyBorder(2, 2, 2, 2);
setBorder(BorderFactory.createCompoundBorder(outsideBorder, insideBorder));
}
@Override
public void paint(Graphics g) {
super.paint(g);
}
@Override
public void paint(Graphics grphcs) {
super.paint(grphcs);
// Prepare shape
Graphics2D g2 = (Graphics2D) grphcs;
int width = getWidth() - 2;
int height = getHeight() - 2;
GradientPaint gp = null;
// Enable antialias
g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON);
// Render frame
if (state == STATE_NONE) {
// Draw shadow
g2.setColor(Colorset.COLOR_LIGHT_SHADOW);
g2.drawRoundRect(1, 1, width, height, BORDER_RADIUS, BORDER_RADIUS);
// Draw fill
gp =
new GradientPaint(0f, -height / 4, Colorset.G_SEL_TOP, 0f, height, Colorset.G_SEL_BOTTOM);
g2.setPaint(gp);
g2.fillRoundRect(0, 0, width, height, BORDER_RADIUS, BORDER_RADIUS);
// Draw frame
g2.setColor(Colorset.COLOR_SHADOW);
g2.drawRoundRect(0, 0, width, height, BORDER_RADIUS, BORDER_RADIUS);
} else if (state == STATE_HOVER) {
// Draw shadow
g2.setColor(Colorset.COLOR_LIGHT_SHADOW);
g2.drawRoundRect(1, 1, width, height, BORDER_RADIUS, BORDER_RADIUS);
// Draw fill
gp = new GradientPaint(0f, height / 8, Colorset.G_SEL_TOP, 0f, height, Colorset.G_SEL_BOTTOM);
g2.setPaint(gp);
g2.fillRoundRect(0, 0, width, height, BORDER_RADIUS, BORDER_RADIUS);
// Draw frame
g2.setColor(Colorset.COLOR_SHADOW);
g2.drawRoundRect(0, 0, width, height, BORDER_RADIUS, BORDER_RADIUS);
} else if (state == STATE_DOWN) {
// Draw dark fill
gp =
new GradientPaint(
0f, 0f, Colorset.COLOR_LIGHT_SHADOW, 0f, height, Colorset.G_UNSEL_BOTTOM);
g2.setPaint(gp);
g2.fillRoundRect(0, 0, width, height, BORDER_RADIUS, BORDER_RADIUS);
// Draw frame
g2.setColor(Colorset.COLOR_DARK_SHADOW);
g2.drawRoundRect(0, 0, width, height, BORDER_RADIUS, BORDER_RADIUS);
}
// Render text
if (text != null) {
g2.setColor(textColor);
FontMetrics fm = g2.getFontMetrics();
LineMetrics lm = fm.getLineMetrics(text, g2);
int txtW = fm.stringWidth(text);
g2.drawString(text, (width - txtW) / 2, (height + fm.getHeight()) / 2 - 2);
}
}
public int print(Graphics g, PageFormat pageFormat, int pageIndex) {
Graphics2D g2d = (Graphics2D) g;
int page = 0;
double curY = 0;
double k = 1.0;
for (int i = 0; i < componentsToBePrinted.length; i++) {
JComponent c = (JComponent) componentsToBePrinted[i];
double pw = pageFormat.getImageableWidth();
double cw = c.getSize().width;
double ph = pageFormat.getImageableHeight();
double ch = c.getSize().height;
if (cw == 0) {
cw = pw;
ch = c.getPreferredSize().height;
c.setSize((int) cw, (int) ch);
c.setPreferredSize(new Dimension((int) cw, (int) ch));
}
double l = ph / ch;
if (i == 0 && !isHelpView) {
k = 1.0;
} else if (i == 1) {
k = pw / cw;
k = Math.min(k, l);
}
if (curY + ch * k > pageFormat.getImageableHeight()) {
curY = 0;
page++;
}
boolean componentPainted = true;
if (page == pageIndex && g2d != null) {
g2d.translate((int) pageFormat.getImageableX(), (int) pageFormat.getImageableY() + curY);
g2d.scale(k, k);
disableDoubleBuffering(c);
if (c instanceof Math4u2TextPane) {
Math4u2TextPane tp = (Math4u2TextPane) c;
boolean isHistory = tp.isHistory();
if (tp.getDocument().getLength() != 0) {
tp.setHistory(false);
c.paint(g2d);
tp.setHistory(isHistory);
} else {
componentPainted = false;
}
} else {
c.paint(g2d);
} // else
enableDoubleBuffering(c);
g2d.scale(1 / k, 1 / k);
g2d.translate((int) -pageFormat.getImageableX(), (int) -pageFormat.getImageableY() - curY);
} // if
if (componentPainted) {
curY += ch * k + 10;
} // if
} // for i
if (page < pageIndex) return NO_SUCH_PAGE;
else return PAGE_EXISTS;
} // print
public void paint(Graphics g) {
super.paint(g);
// LineMetrics _metrics = _font.
}
public void paint(Graphics g) {
super.paint(g);
/*
g.setFont(getFont());
if (transcript == null)
return;
rh.removeAll();
// int length = editorPanel.
// getSequenceForTier(editorPanel.getSelectedTier()).getLength();
translationStart = transcript.getTranslationStart();
int laststart_base = transcript.getPositionFrom(translationStart, 2);
translationEnd = transcript.getTranslationEnd();
int laststop_base = transcript.getLastBaseOfStopCodon();
int readthrough_pos = transcript.readThroughStopPosition();
int lastreadon_base = transcript.getPositionFrom(readthrough_pos, 2);
int topDistance = (getSize().height - barHeight) / 2;
java.util.Vector exons = transcript.getExons();
int exon_count = exons.size();
int featureWidth;
// if we want to see the introns then set featureWidth to the transcript
// length and draw a rectangle.
if (drawIntrons) {
featureWidth = (int) transcript.length();
int lowPos = editorPanel.getAnnotationPanel()
.basePairToPosition((int)transcript.getLow());
int highPos = editorPanel.getAnnotationPanel()
.basePairToPosition((int)transcript.getHigh());
//int lineColorIndex = (editorPanel.getRangeIndex(tier,
// lowPos,
// highPos)
// % colorList.length);
//g.setColor(colorList[lineColorIndex][0]);
g.setColor(editorPanel.getIndicatorColor());
g.fillRect(margin,
(getSize().height - 2) / 2,
getSize().width - margin*2 - 1,
3);
} else {
featureWidth = 0;
for(int i=0; i < exon_count; i++) {
SeqFeatureI feature = (SeqFeatureI) exons.elementAt(i);
featureWidth += (int) feature.length();
}
}
double scaling_factor = ((double) featureWidth /
(double) (getSize().width - margin*2));
int x = margin;
// Loop through exons
for(int i=0; i < exon_count; i++) {
ExonI exon = transcript.getExonAt(i);
int low = (int) exon.getLow();
int high = (int) exon.getHigh();
int lowPos = editorPanel.getAnnotationPanel().basePairToPosition(low);
int highPos = editorPanel.getAnnotationPanel().basePairToPosition(high);
int width = (int) Math.floor(exon.length() / scaling_factor);
if (width < 1)
width = 1;
// int transcriptColorIndex = (editorPanel.getRangeIndex(tier,
// lowPos,
// highPos)
// % colorList.length);
// int exonColorIndex = (editorPanel.getExonRangeIndex(tier,
// lowPos,
// highPos)
// % colorList[transcriptColorIndex].length);
// g.setColor(colorList[transcriptColorIndex][exonColorIndex]);
g.setColor(Color.blue); //TODO: change
int drawX = x;
rh.put(drawX, drawX+width-1, exon);
g.fillRect(drawX,
topDistance,
width,
barHeight+1);
// paint the codons
paintCodon (g,
exon,
translationStart, laststart_base,
low, high,
DrawableUtil.getStartCodonColor(transcript),
x, topDistance, scaling_factor);
paintCodon (g,
exon,
translationEnd, laststop_base,
low, high,
Color.red,
x, topDistance, scaling_factor);
paintCodon (g,
exon,
readthrough_pos, lastreadon_base,
low, high,
Color.pink,
x, topDistance, scaling_factor);
// If exon is coding draw in frame number - what is the first frame?X
paintFrame(g, exon, low, high, translationStart, laststop_base,
x, topDistance, scaling_factor);
// increment x
x += width;
if (drawIntrons && (i + 1) < exon_count) {
ExonI nextExon = transcript.getExonAt (i+1);
int intron_len = (int) (exon.getStrand() == 1 ?
(nextExon.getLow() - high + 1) :
(low - nextExon.getHigh() + 1));
x += (intron_len / scaling_factor);
}
} // end of exon loop
int baseStart = editorPanel.getVisibleBase();
int baseCount = editorPanel.getVisibleBaseCount();
int baseOffset = baseStart - (int) transcript.getStart();
if (editorPanel.getStrand() == Strand.REVERSE)
baseOffset = (int) transcript.getStart() - baseStart;
int pixelOffset = (int) ((double) baseOffset / scaling_factor);
int basePixelStart = margin+pixelOffset;
int basePixelCount = (int) ((double) baseCount /
(double) scaling_factor);
// g.setColor(Color.yellow);
// Box that goes over exon diagram at the bottom to show which region
// you're seeing in the detailed view
g.setColor(Color.black); //TODO config
g.drawRect(basePixelStart, topDistance-4,
basePixelCount, barHeight+8);
// To make a two-pixel-wide rectangle, draw a one-pixel-bigger rectangle
// around the first one
g.drawRect(basePixelStart-1, topDistance-5,
basePixelCount+2, barHeight+10);*/
}