void drawRoiLabel(Graphics g, int index, Roi roi) {
Rectangle r = roi.getBounds();
int x = screenX(r.x);
int y = screenY(r.y);
double mag = getMagnification();
int width = (int) (r.width * mag);
int height = (int) (r.height * mag);
int size = width > 40 && height > 40 ? 12 : 9;
if (font != null) {
g.setFont(font);
size = font.getSize();
} else if (size == 12) g.setFont(largeFont);
else g.setFont(smallFont);
boolean drawingList = index >= LIST_OFFSET;
if (drawingList) index -= LIST_OFFSET;
String label = "" + (index + 1);
if (drawNames && roi.getName() != null) label = roi.getName();
FontMetrics metrics = g.getFontMetrics();
int w = metrics.stringWidth(label);
x = x + width / 2 - w / 2;
y = y + height / 2 + Math.max(size / 2, 6);
int h = metrics.getAscent() + metrics.getDescent();
if (bgColor != null) {
g.setColor(bgColor);
g.fillRoundRect(x - 1, y - h + 2, w + 1, h - 3, 5, 5);
}
if (!drawingList && labelRects != null && index < labelRects.length)
labelRects[index] = new Rectangle(x - 1, y - h + 2, w + 1, h);
g.setColor(labelColor);
g.drawString(label, x, y - 2);
g.setColor(defaultColor);
}
protected void handleRoiMouseDown(MouseEvent e) {
int sx = e.getX();
int sy = e.getY();
int ox = offScreenX(sx);
int oy = offScreenY(sy);
Roi roi = imp.getRoi();
int handle = roi != null ? roi.isHandle(sx, sy) : -1;
boolean multiPointMode =
roi != null
&& (roi instanceof PointRoi)
&& handle == -1
&& Toolbar.getToolId() == Toolbar.POINT
&& Toolbar.getMultiPointMode();
if (multiPointMode) {
imp.setRoi(((PointRoi) roi).addPoint(ox, oy));
return;
}
setRoiModState(e, roi, handle);
if (roi != null) {
if (handle >= 0) {
roi.mouseDownInHandle(handle, sx, sy);
return;
}
Rectangle r = roi.getBounds();
int type = roi.getType();
if (type == Roi.RECTANGLE
&& r.width == imp.getWidth()
&& r.height == imp.getHeight()
&& roi.getPasteMode() == Roi.NOT_PASTING
&& !(roi instanceof ImageRoi)) {
imp.killRoi();
return;
}
if (roi.contains(ox, oy)) {
if (roi.modState == Roi.NO_MODS) roi.handleMouseDown(sx, sy);
else {
imp.killRoi();
imp.createNewRoi(sx, sy);
}
return;
}
if ((type == Roi.POLYGON || type == Roi.POLYLINE || type == Roi.ANGLE)
&& roi.getState() == roi.CONSTRUCTING) return;
int tool = Toolbar.getToolId();
if ((tool == Toolbar.POLYGON || tool == Toolbar.POLYLINE || tool == Toolbar.ANGLE)
&& !(IJ.shiftKeyDown() || IJ.altKeyDown())) {
imp.killRoi();
return;
}
}
imp.createNewRoi(sx, sy);
}
public void run(String arg) {
imp = IJ.getImage();
if (imp == null) return;
stackSize = imp.getStackSize();
Roi roi = imp.getRoi();
Calibration cal = imp.getCalibration();
if (roi != null && roi.getBounds().equals(prevRoi) && cal.pixelWidth == prevPixelWidth)
roi = null;
if (roi != null) {
boolean rectOrOval =
roi != null && (roi.getType() == Roi.RECTANGLE || roi.getType() == Roi.OVAL);
oval = rectOrOval && (roi.getType() == Roi.OVAL); // Handle existing oval ROI
Rectangle r = roi.getBounds();
width = r.width;
height = r.height;
xRoi = r.x;
yRoi = r.y;
if (scaledUnits && cal.scaled()) {
xRoi = xRoi * cal.pixelWidth;
yRoi = yRoi * cal.pixelHeight;
width = width * cal.pixelWidth;
height = height * cal.pixelHeight;
}
if (centered) { // Make xRoi and yRoi consistent when centered mode is active
xRoi += width / 2.0;
yRoi += height / 2.0;
}
} else if (!validDialogValues()) {
width = imp.getWidth() / 2;
height = imp.getHeight() / 2;
xRoi = width / 2;
yRoi = height / 2;
}
iSlice = imp.getCurrentSlice();
showDialog();
}
public void mouseReleased(MouseEvent e) {
flags = e.getModifiers();
flags &= ~InputEvent.BUTTON1_MASK; // make sure button 1 bit is not set
flags &= ~InputEvent.BUTTON2_MASK; // make sure button 2 bit is not set
flags &= ~InputEvent.BUTTON3_MASK; // make sure button 3 bit is not set
Roi roi = imp.getRoi();
if (roi != null) {
Rectangle r = roi.getBounds();
int type = roi.getType();
if ((r.width == 0 || r.height == 0)
&& !(type == Roi.POLYGON || type == Roi.POLYLINE || type == Roi.ANGLE || type == Roi.LINE)
&& !(roi instanceof TextRoi)
&& roi.getState() == roi.CONSTRUCTING
&& type != roi.POINT) imp.killRoi();
else {
roi.handleMouseUp(e.getX(), e.getY());
if (roi.getType() == Roi.LINE && roi.getLength() == 0.0) imp.killRoi();
}
}
}
void drawRoi() {
double xPxl = xRoi;
double yPxl = yRoi;
if (centered) {
xPxl -= width / 2;
yPxl -= height / 2;
}
double widthPxl = width;
double heightPxl = height;
Calibration cal = imp.getCalibration();
if (scaledUnits && cal.scaled()) {
xPxl /= cal.pixelWidth;
yPxl /= cal.pixelHeight;
widthPxl /= cal.pixelWidth;
heightPxl /= cal.pixelHeight;
prevPixelWidth = cal.pixelWidth;
}
Roi roi;
if (oval) roi = new OvalRoi(xPxl, yPxl, widthPxl, heightPxl);
else roi = new Roi(xPxl, yPxl, widthPxl, heightPxl);
imp.setRoi(roi);
prevRoi = roi.getBounds();
// prevPixelWidth = cal.pixelWidth;
}
String getInfo(ImagePlus imp, ImageProcessor ip) {
String s = new String("\n");
s += "Title: " + imp.getTitle() + "\n";
Calibration cal = imp.getCalibration();
int stackSize = imp.getStackSize();
int channels = imp.getNChannels();
int slices = imp.getNSlices();
int frames = imp.getNFrames();
int digits = imp.getBitDepth() == 32 ? 4 : 0;
if (cal.scaled()) {
String unit = cal.getUnit();
String units = cal.getUnits();
s +=
"Width: "
+ IJ.d2s(imp.getWidth() * cal.pixelWidth, 2)
+ " "
+ units
+ " ("
+ imp.getWidth()
+ ")\n";
s +=
"Height: "
+ IJ.d2s(imp.getHeight() * cal.pixelHeight, 2)
+ " "
+ units
+ " ("
+ imp.getHeight()
+ ")\n";
if (slices > 1)
s += "Depth: " + IJ.d2s(slices * cal.pixelDepth, 2) + " " + units + " (" + slices + ")\n";
double xResolution = 1.0 / cal.pixelWidth;
double yResolution = 1.0 / cal.pixelHeight;
int places = Tools.getDecimalPlaces(xResolution, yResolution);
if (xResolution == yResolution)
s += "Resolution: " + IJ.d2s(xResolution, places) + " pixels per " + unit + "\n";
else {
s += "X Resolution: " + IJ.d2s(xResolution, places) + " pixels per " + unit + "\n";
s += "Y Resolution: " + IJ.d2s(yResolution, places) + " pixels per " + unit + "\n";
}
} else {
s += "Width: " + imp.getWidth() + " pixels\n";
s += "Height: " + imp.getHeight() + " pixels\n";
if (stackSize > 1) s += "Depth: " + slices + " pixels\n";
}
if (stackSize > 1)
s +=
"Voxel size: "
+ d2s(cal.pixelWidth)
+ "x"
+ d2s(cal.pixelHeight)
+ "x"
+ d2s(cal.pixelDepth)
+ " "
+ cal.getUnit()
+ "\n";
else
s +=
"Pixel size: "
+ d2s(cal.pixelWidth)
+ "x"
+ d2s(cal.pixelHeight)
+ " "
+ cal.getUnit()
+ "\n";
s += "ID: " + imp.getID() + "\n";
String zOrigin = stackSize > 1 || cal.zOrigin != 0.0 ? "," + d2s(cal.zOrigin) : "";
s += "Coordinate origin: " + d2s(cal.xOrigin) + "," + d2s(cal.yOrigin) + zOrigin + "\n";
int type = imp.getType();
switch (type) {
case ImagePlus.GRAY8:
s += "Bits per pixel: 8 ";
String lut = "LUT";
if (imp.getProcessor().isColorLut()) lut = "color " + lut;
else lut = "grayscale " + lut;
if (imp.isInvertedLut()) lut = "inverting " + lut;
s += "(" + lut + ")\n";
if (imp.getNChannels() > 1) s += displayRanges(imp);
else s += "Display range: " + (int) ip.getMin() + "-" + (int) ip.getMax() + "\n";
break;
case ImagePlus.GRAY16:
case ImagePlus.GRAY32:
if (type == ImagePlus.GRAY16) {
String sign = cal.isSigned16Bit() ? "signed" : "unsigned";
s += "Bits per pixel: 16 (" + sign + ")\n";
} else s += "Bits per pixel: 32 (float)\n";
if (imp.getNChannels() > 1) s += displayRanges(imp);
else {
s += "Display range: ";
double min = ip.getMin();
double max = ip.getMax();
if (cal.calibrated()) {
min = cal.getCValue((int) min);
max = cal.getCValue((int) max);
}
s += IJ.d2s(min, digits) + " - " + IJ.d2s(max, digits) + "\n";
}
break;
case ImagePlus.COLOR_256:
s += "Bits per pixel: 8 (color LUT)\n";
break;
case ImagePlus.COLOR_RGB:
s += "Bits per pixel: 32 (RGB)\n";
break;
}
double interval = cal.frameInterval;
double fps = cal.fps;
if (stackSize > 1) {
ImageStack stack = imp.getStack();
int slice = imp.getCurrentSlice();
String number = slice + "/" + stackSize;
String label = stack.getShortSliceLabel(slice);
if (label != null && label.length() > 0) label = " (" + label + ")";
else label = "";
if (interval > 0.0 || fps != 0.0) {
s += "Frame: " + number + label + "\n";
if (fps != 0.0) {
String sRate =
Math.abs(fps - Math.round(fps)) < 0.00001 ? IJ.d2s(fps, 0) : IJ.d2s(fps, 5);
s += "Frame rate: " + sRate + " fps\n";
}
if (interval != 0.0)
s +=
"Frame interval: "
+ ((int) interval == interval ? IJ.d2s(interval, 0) : IJ.d2s(interval, 5))
+ " "
+ cal.getTimeUnit()
+ "\n";
} else s += "Image: " + number + label + "\n";
if (imp.isHyperStack()) {
if (channels > 1) s += " Channel: " + imp.getChannel() + "/" + channels + "\n";
if (slices > 1) s += " Slice: " + imp.getSlice() + "/" + slices + "\n";
if (frames > 1) s += " Frame: " + imp.getFrame() + "/" + frames + "\n";
}
if (imp.isComposite()) {
if (!imp.isHyperStack() && channels > 1) s += " Channels: " + channels + "\n";
String mode = ((CompositeImage) imp).getModeAsString();
s += " Composite mode: \"" + mode + "\"\n";
}
}
if (ip.getMinThreshold() == ImageProcessor.NO_THRESHOLD) s += "No Threshold\n";
else {
double lower = ip.getMinThreshold();
double upper = ip.getMaxThreshold();
int dp = digits;
if (cal.calibrated()) {
lower = cal.getCValue((int) lower);
upper = cal.getCValue((int) upper);
dp = cal.isSigned16Bit() ? 0 : 4;
}
s += "Threshold: " + IJ.d2s(lower, dp) + "-" + IJ.d2s(upper, dp) + "\n";
}
ImageCanvas ic = imp.getCanvas();
double mag = ic != null ? ic.getMagnification() : 1.0;
if (mag != 1.0) s += "Magnification: " + IJ.d2s(mag, 2) + "\n";
if (cal.calibrated()) {
s += " \n";
int curveFit = cal.getFunction();
s += "Calibration Function: ";
if (curveFit == Calibration.UNCALIBRATED_OD) s += "Uncalibrated OD\n";
else if (curveFit == Calibration.CUSTOM) s += "Custom lookup table\n";
else s += CurveFitter.fList[curveFit] + "\n";
double[] c = cal.getCoefficients();
if (c != null) {
s += " a: " + IJ.d2s(c[0], 6) + "\n";
s += " b: " + IJ.d2s(c[1], 6) + "\n";
if (c.length >= 3) s += " c: " + IJ.d2s(c[2], 6) + "\n";
if (c.length >= 4) s += " c: " + IJ.d2s(c[3], 6) + "\n";
if (c.length >= 5) s += " c: " + IJ.d2s(c[4], 6) + "\n";
}
s += " Unit: \"" + cal.getValueUnit() + "\"\n";
} else s += "Uncalibrated\n";
FileInfo fi = imp.getOriginalFileInfo();
if (fi != null) {
if (fi.url != null && !fi.url.equals("")) s += "URL: " + fi.url + "\n";
else if (fi.directory != null && fi.fileName != null)
s += "Path: " + fi.directory + fi.fileName + "\n";
}
ImageWindow win = imp.getWindow();
if (win != null) {
Point loc = win.getLocation();
Dimension screen = IJ.getScreenSize();
s +=
"Screen location: "
+ loc.x
+ ","
+ loc.y
+ " ("
+ screen.width
+ "x"
+ screen.height
+ ")\n";
}
Overlay overlay = imp.getOverlay();
if (overlay != null) {
String hidden = imp.getHideOverlay() ? " (hidden)" : " ";
int n = overlay.size();
String elements = n == 1 ? " element" : " elements";
s += "Overlay: " + n + elements + (imp.getHideOverlay() ? " (hidden)" : "") + "\n";
} else s += "No Overlay\n";
Roi roi = imp.getRoi();
if (roi == null) {
if (cal.calibrated()) s += " \n";
s += "No Selection\n";
} else if (roi instanceof EllipseRoi) {
s += "\nElliptical Selection\n";
double[] p = ((EllipseRoi) roi).getParams();
double dx = p[2] - p[0];
double dy = p[3] - p[1];
double major = Math.sqrt(dx * dx + dy * dy);
s += " Major: " + IJ.d2s(major, 2) + "\n";
s += " Minor: " + IJ.d2s(major * p[4], 2) + "\n";
s += " X1: " + IJ.d2s(p[0], 2) + "\n";
s += " Y1: " + IJ.d2s(p[1], 2) + "\n";
s += " X2: " + IJ.d2s(p[2], 2) + "\n";
s += " Y2: " + IJ.d2s(p[3], 2) + "\n";
s += " Aspect ratio: " + IJ.d2s(p[4], 2) + "\n";
} else {
s += " \n";
s += roi.getTypeAsString() + " Selection";
String points = null;
if (roi instanceof PointRoi) {
int npoints = ((PolygonRoi) roi).getNCoordinates();
String suffix = npoints > 1 ? "s)" : ")";
points = " (" + npoints + " point" + suffix;
}
String name = roi.getName();
if (name != null) {
s += " (\"" + name + "\")";
if (points != null) s += "\n " + points;
} else if (points != null) s += points;
s += "\n";
Rectangle r = roi.getBounds();
if (roi instanceof Line) {
Line line = (Line) roi;
s += " X1: " + IJ.d2s(line.x1d * cal.pixelWidth) + "\n";
s += " Y1: " + IJ.d2s(yy(line.y1d, imp) * cal.pixelHeight) + "\n";
s += " X2: " + IJ.d2s(line.x2d * cal.pixelWidth) + "\n";
s += " Y2: " + IJ.d2s(yy(line.y2d, imp) * cal.pixelHeight) + "\n";
} else if (cal.scaled()) {
s += " X: " + IJ.d2s(cal.getX(r.x)) + " (" + r.x + ")\n";
s += " Y: " + IJ.d2s(cal.getY(r.y, imp.getHeight())) + " (" + r.y + ")\n";
s += " Width: " + IJ.d2s(r.width * cal.pixelWidth) + " (" + r.width + ")\n";
s += " Height: " + IJ.d2s(r.height * cal.pixelHeight) + " (" + r.height + ")\n";
} else {
s += " X: " + r.x + "\n";
s += " Y: " + yy(r.y, imp) + "\n";
s += " Width: " + r.width + "\n";
s += " Height: " + r.height + "\n";
}
}
return s;
}
public void mousePressed(MouseEvent e) {
// if (ij==null) return;
showCursorStatus = true;
int toolID = Toolbar.getToolId();
ImageWindow win = imp.getWindow();
if (win != null && win.running2 && toolID != Toolbar.MAGNIFIER) {
if (win instanceof StackWindow) ((StackWindow) win).setAnimate(false);
else win.running2 = false;
return;
}
int x = e.getX();
int y = e.getY();
flags = e.getModifiers();
// IJ.log("Mouse pressed: " + e.isPopupTrigger() + " " + ij.modifiers(flags));
// if (toolID!=Toolbar.MAGNIFIER && e.isPopupTrigger()) {
if (toolID != Toolbar.MAGNIFIER
&& (e.isPopupTrigger() || (!IJ.isMacintosh() && (flags & Event.META_MASK) != 0))) {
handlePopupMenu(e);
return;
}
int ox = offScreenX(x);
int oy = offScreenY(y);
xMouse = ox;
yMouse = oy;
if (IJ.spaceBarDown()) {
// temporarily switch to "hand" tool of space bar down
setupScroll(ox, oy);
return;
}
if (showAllROIs) {
Roi roi = imp.getRoi();
if (!(roi != null && (roi.contains(ox, oy) || roi.isHandle(x, y) >= 0))
&& roiManagerSelect(x, y)) return;
}
if (customRoi && overlay != null) return;
switch (toolID) {
case Toolbar.MAGNIFIER:
if (IJ.shiftKeyDown()) zoomToSelection(ox, oy);
else if ((flags & (Event.ALT_MASK | Event.META_MASK | Event.CTRL_MASK)) != 0) {
// IJ.run("Out");
zoomOut(x, y);
if (getMagnification() < 1.0) imp.repaintWindow();
} else {
// IJ.run("In");
zoomIn(x, y);
if (getMagnification() <= 1.0) imp.repaintWindow();
}
break;
case Toolbar.HAND:
setupScroll(ox, oy);
break;
case Toolbar.DROPPER:
setDrawingColor(ox, oy, IJ.altKeyDown());
break;
case Toolbar.WAND:
Roi roi = imp.getRoi();
if (roi != null && roi.contains(ox, oy)) {
Rectangle r = roi.getBounds();
if (r.width == imageWidth && r.height == imageHeight) imp.killRoi();
else if (!e.isAltDown()) {
handleRoiMouseDown(e);
return;
}
}
if (roi != null) {
int handle = roi.isHandle(x, y);
if (handle >= 0) {
roi.mouseDownInHandle(handle, x, y);
return;
}
}
setRoiModState(e, roi, -1);
String mode = WandToolOptions.getMode();
double tolerance = WandToolOptions.getTolerance();
int npoints = IJ.doWand(ox, oy, tolerance, mode);
if (Recorder.record && npoints > 0) {
if (tolerance == 0.0 && mode.equals("Legacy")) Recorder.record("doWand", ox, oy);
else
Recorder.recordString(
"doWand(" + ox + ", " + oy + ", " + tolerance + ", \"" + mode + "\");\n");
}
break;
case Toolbar.OVAL:
if (Toolbar.getBrushSize() > 0) new RoiBrush();
else handleRoiMouseDown(e);
break;
case Toolbar.SPARE1:
case Toolbar.SPARE2:
case Toolbar.SPARE3:
case Toolbar.SPARE4:
case Toolbar.SPARE5:
case Toolbar.SPARE6:
case Toolbar.SPARE7:
case Toolbar.SPARE8:
case Toolbar.SPARE9:
Toolbar.getInstance().runMacroTool(toolID);
break;
default: // selection tool
handleRoiMouseDown(e);
}
}
