Esempio n. 1
0
 void resetMaxBounds() {
   ImageWindow win = imp.getWindow();
   if (win != null && (System.currentTimeMillis() - win.setMaxBoundsTime) > 500L) {
     win.setMaximizedBounds(win.maxWindowBounds);
     maxBoundsReset = true;
   }
 }
Esempio n. 2
0
 public void mouseMoved(MouseEvent e) {
   // if (ij==null) return;
   int sx = e.getX();
   int sy = e.getY();
   int ox = offScreenX(sx);
   int oy = offScreenY(sy);
   flags = e.getModifiers();
   setCursor(sx, sy, ox, oy);
   IJ.setInputEvent(e);
   Roi roi = imp.getRoi();
   if (roi != null
       && (roi.getType() == Roi.POLYGON
           || roi.getType() == Roi.POLYLINE
           || roi.getType() == Roi.ANGLE)
       && roi.getState() == roi.CONSTRUCTING) {
     PolygonRoi pRoi = (PolygonRoi) roi;
     pRoi.handleMouseMove(ox, oy);
   } else {
     if (ox < imageWidth && oy < imageHeight) {
       ImageWindow win = imp.getWindow();
       // Cursor must move at least 12 pixels before text
       // displayed using IJ.showStatus() is overwritten.
       if ((sx - sx2) * (sx - sx2) + (sy - sy2) * (sy - sy2) > 144) showCursorStatus = true;
       if (win != null && showCursorStatus) win.mouseMoved(ox, oy);
     } else IJ.showStatus("");
   }
 }
Esempio n. 3
0
 void setMaxBounds() {
   if (maxBoundsReset) {
     maxBoundsReset = false;
     ImageWindow win = imp.getWindow();
     if (win != null && !IJ.isLinux() && win.maxBounds != null) {
       win.setMaximizedBounds(win.maxBounds);
       win.setMaxBoundsTime = System.currentTimeMillis();
     }
   }
 }
Esempio n. 4
0
 void abortPluginOrMacro(ImagePlus imp) {
   if (imp != null) {
     ImageWindow win = imp.getWindow();
     if (win != null) {
       win.running = false;
       win.running2 = false;
     }
   }
   Macro.abort();
   Interpreter.abort();
   if (Interpreter.getInstance() != null) IJ.beep();
 }
Esempio n. 5
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 private boolean ignoreArrowKeys(ImagePlus imp) {
   Frame frame = WindowManager.getFrontWindow();
   String title = frame.getTitle();
   if (title != null && title.equals("ROI Manager")) return true;
   // Control Panel?
   if (frame != null && frame instanceof javax.swing.JFrame) return true;
   ImageWindow win = imp.getWindow();
   // LOCI Data Browser window?
   if (imp.getStackSize() > 1 && win != null && win.getClass().getName().startsWith("loci"))
     return true;
   return false;
 }
Esempio n. 6
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 /** Implements the Image/Zoom/Original Scale command. */
 public void unzoom() {
   double imag = imp.getWindow().getInitialMagnification();
   if (magnification == imag) return;
   srcRect = new Rectangle(0, 0, imageWidth, imageHeight);
   ImageWindow win = imp.getWindow();
   setDrawingSize((int) (imageWidth * imag), (int) (imageHeight * imag));
   setMagnification(imag);
   setMaxBounds();
   win.pack();
   setMaxBounds();
   repaint();
 }
Esempio n. 7
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 public void fitToWindow() {
   ImageWindow win = imp.getWindow();
   if (win == null) return;
   Rectangle bounds = win.getBounds();
   Insets insets = win.getInsets();
   int sliderHeight = (win instanceof StackWindow) ? 20 : 0;
   double xmag = (double) (bounds.width - 10) / srcRect.width;
   double ymag = (double) (bounds.height - (10 + insets.top + sliderHeight)) / srcRect.height;
   setMagnification(Math.min(xmag, ymag));
   int width = (int) (imageWidth * magnification);
   int height = (int) (imageHeight * magnification);
   if (width == dstWidth && height == dstHeight) return;
   srcRect = new Rectangle(0, 0, imageWidth, imageHeight);
   setDrawingSize(width, height);
   getParent().doLayout();
 }
Esempio n. 8
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 protected Dimension canEnlarge(int newWidth, int newHeight) {
   // if ((flags&Event.CTRL_MASK)!=0 || IJ.controlKeyDown()) return null;
   ImageWindow win = imp.getWindow();
   if (win == null) return null;
   Rectangle r1 = win.getBounds();
   Insets insets = win.getInsets();
   Point loc = getLocation();
   if (loc.x > insets.left + 5 || loc.y > insets.top + 5) {
     r1.width = newWidth + insets.left + insets.right + 10;
     r1.height = newHeight + insets.top + insets.bottom + 10;
     if (win instanceof StackWindow) r1.height += 20;
   } else {
     r1.width = r1.width - dstWidth + newWidth + 10;
     r1.height = r1.height - dstHeight + newHeight + 10;
   }
   Rectangle max = win.getMaxWindow(r1.x, r1.y);
   boolean fitsHorizontally = r1.x + r1.width < max.x + max.width;
   boolean fitsVertically = r1.y + r1.height < max.y + max.height;
   if (fitsHorizontally && fitsVertically) return new Dimension(newWidth, newHeight);
   else if (fitsVertically && newHeight < dstWidth) return new Dimension(dstWidth, newHeight);
   else if (fitsHorizontally && newWidth < dstHeight) return new Dimension(newWidth, dstHeight);
   else return null;
 }
Esempio n. 9
0
  String getInfo(ImagePlus imp, ImageProcessor ip) {
    String s = new String("\n");
    s += "Title: " + imp.getTitle() + "\n";
    Calibration cal = imp.getCalibration();
    int stackSize = imp.getStackSize();
    int channels = imp.getNChannels();
    int slices = imp.getNSlices();
    int frames = imp.getNFrames();
    int digits = imp.getBitDepth() == 32 ? 4 : 0;
    if (cal.scaled()) {
      String unit = cal.getUnit();
      String units = cal.getUnits();
      s +=
          "Width:  "
              + IJ.d2s(imp.getWidth() * cal.pixelWidth, 2)
              + " "
              + units
              + " ("
              + imp.getWidth()
              + ")\n";
      s +=
          "Height:  "
              + IJ.d2s(imp.getHeight() * cal.pixelHeight, 2)
              + " "
              + units
              + " ("
              + imp.getHeight()
              + ")\n";
      if (slices > 1)
        s += "Depth:  " + IJ.d2s(slices * cal.pixelDepth, 2) + " " + units + " (" + slices + ")\n";
      double xResolution = 1.0 / cal.pixelWidth;
      double yResolution = 1.0 / cal.pixelHeight;
      int places = Tools.getDecimalPlaces(xResolution, yResolution);
      if (xResolution == yResolution)
        s += "Resolution:  " + IJ.d2s(xResolution, places) + " pixels per " + unit + "\n";
      else {
        s += "X Resolution:  " + IJ.d2s(xResolution, places) + " pixels per " + unit + "\n";
        s += "Y Resolution:  " + IJ.d2s(yResolution, places) + " pixels per " + unit + "\n";
      }
    } else {
      s += "Width:  " + imp.getWidth() + " pixels\n";
      s += "Height:  " + imp.getHeight() + " pixels\n";
      if (stackSize > 1) s += "Depth:  " + slices + " pixels\n";
    }
    if (stackSize > 1)
      s +=
          "Voxel size: "
              + d2s(cal.pixelWidth)
              + "x"
              + d2s(cal.pixelHeight)
              + "x"
              + d2s(cal.pixelDepth)
              + " "
              + cal.getUnit()
              + "\n";
    else
      s +=
          "Pixel size: "
              + d2s(cal.pixelWidth)
              + "x"
              + d2s(cal.pixelHeight)
              + " "
              + cal.getUnit()
              + "\n";

    s += "ID: " + imp.getID() + "\n";
    String zOrigin = stackSize > 1 || cal.zOrigin != 0.0 ? "," + d2s(cal.zOrigin) : "";
    s += "Coordinate origin:  " + d2s(cal.xOrigin) + "," + d2s(cal.yOrigin) + zOrigin + "\n";
    int type = imp.getType();
    switch (type) {
      case ImagePlus.GRAY8:
        s += "Bits per pixel: 8 ";
        String lut = "LUT";
        if (imp.getProcessor().isColorLut()) lut = "color " + lut;
        else lut = "grayscale " + lut;
        if (imp.isInvertedLut()) lut = "inverting " + lut;
        s += "(" + lut + ")\n";
        if (imp.getNChannels() > 1) s += displayRanges(imp);
        else s += "Display range: " + (int) ip.getMin() + "-" + (int) ip.getMax() + "\n";
        break;
      case ImagePlus.GRAY16:
      case ImagePlus.GRAY32:
        if (type == ImagePlus.GRAY16) {
          String sign = cal.isSigned16Bit() ? "signed" : "unsigned";
          s += "Bits per pixel: 16 (" + sign + ")\n";
        } else s += "Bits per pixel: 32 (float)\n";
        if (imp.getNChannels() > 1) s += displayRanges(imp);
        else {
          s += "Display range: ";
          double min = ip.getMin();
          double max = ip.getMax();
          if (cal.calibrated()) {
            min = cal.getCValue((int) min);
            max = cal.getCValue((int) max);
          }
          s += IJ.d2s(min, digits) + " - " + IJ.d2s(max, digits) + "\n";
        }
        break;
      case ImagePlus.COLOR_256:
        s += "Bits per pixel: 8 (color LUT)\n";
        break;
      case ImagePlus.COLOR_RGB:
        s += "Bits per pixel: 32 (RGB)\n";
        break;
    }
    double interval = cal.frameInterval;
    double fps = cal.fps;
    if (stackSize > 1) {
      ImageStack stack = imp.getStack();
      int slice = imp.getCurrentSlice();
      String number = slice + "/" + stackSize;
      String label = stack.getShortSliceLabel(slice);
      if (label != null && label.length() > 0) label = " (" + label + ")";
      else label = "";
      if (interval > 0.0 || fps != 0.0) {
        s += "Frame: " + number + label + "\n";
        if (fps != 0.0) {
          String sRate =
              Math.abs(fps - Math.round(fps)) < 0.00001 ? IJ.d2s(fps, 0) : IJ.d2s(fps, 5);
          s += "Frame rate: " + sRate + " fps\n";
        }
        if (interval != 0.0)
          s +=
              "Frame interval: "
                  + ((int) interval == interval ? IJ.d2s(interval, 0) : IJ.d2s(interval, 5))
                  + " "
                  + cal.getTimeUnit()
                  + "\n";
      } else s += "Image: " + number + label + "\n";
      if (imp.isHyperStack()) {
        if (channels > 1) s += "  Channel: " + imp.getChannel() + "/" + channels + "\n";
        if (slices > 1) s += "  Slice: " + imp.getSlice() + "/" + slices + "\n";
        if (frames > 1) s += "  Frame: " + imp.getFrame() + "/" + frames + "\n";
      }
      if (imp.isComposite()) {
        if (!imp.isHyperStack() && channels > 1) s += "  Channels: " + channels + "\n";
        String mode = ((CompositeImage) imp).getModeAsString();
        s += "  Composite mode: \"" + mode + "\"\n";
      }
    }

    if (ip.getMinThreshold() == ImageProcessor.NO_THRESHOLD) s += "No Threshold\n";
    else {
      double lower = ip.getMinThreshold();
      double upper = ip.getMaxThreshold();
      int dp = digits;
      if (cal.calibrated()) {
        lower = cal.getCValue((int) lower);
        upper = cal.getCValue((int) upper);
        dp = cal.isSigned16Bit() ? 0 : 4;
      }
      s += "Threshold: " + IJ.d2s(lower, dp) + "-" + IJ.d2s(upper, dp) + "\n";
    }
    ImageCanvas ic = imp.getCanvas();
    double mag = ic != null ? ic.getMagnification() : 1.0;
    if (mag != 1.0) s += "Magnification: " + IJ.d2s(mag, 2) + "\n";

    if (cal.calibrated()) {
      s += " \n";
      int curveFit = cal.getFunction();
      s += "Calibration Function: ";
      if (curveFit == Calibration.UNCALIBRATED_OD) s += "Uncalibrated OD\n";
      else if (curveFit == Calibration.CUSTOM) s += "Custom lookup table\n";
      else s += CurveFitter.fList[curveFit] + "\n";
      double[] c = cal.getCoefficients();
      if (c != null) {
        s += "  a: " + IJ.d2s(c[0], 6) + "\n";
        s += "  b: " + IJ.d2s(c[1], 6) + "\n";
        if (c.length >= 3) s += "  c: " + IJ.d2s(c[2], 6) + "\n";
        if (c.length >= 4) s += "  c: " + IJ.d2s(c[3], 6) + "\n";
        if (c.length >= 5) s += "  c: " + IJ.d2s(c[4], 6) + "\n";
      }
      s += "  Unit: \"" + cal.getValueUnit() + "\"\n";
    } else s += "Uncalibrated\n";

    FileInfo fi = imp.getOriginalFileInfo();
    if (fi != null) {
      if (fi.url != null && !fi.url.equals("")) s += "URL: " + fi.url + "\n";
      else if (fi.directory != null && fi.fileName != null)
        s += "Path: " + fi.directory + fi.fileName + "\n";
    }

    ImageWindow win = imp.getWindow();
    if (win != null) {
      Point loc = win.getLocation();
      Dimension screen = IJ.getScreenSize();
      s +=
          "Screen location: "
              + loc.x
              + ","
              + loc.y
              + " ("
              + screen.width
              + "x"
              + screen.height
              + ")\n";
    }

    Overlay overlay = imp.getOverlay();
    if (overlay != null) {
      String hidden = imp.getHideOverlay() ? " (hidden)" : " ";
      int n = overlay.size();
      String elements = n == 1 ? " element" : " elements";
      s += "Overlay: " + n + elements + (imp.getHideOverlay() ? " (hidden)" : "") + "\n";
    } else s += "No Overlay\n";

    Roi roi = imp.getRoi();
    if (roi == null) {
      if (cal.calibrated()) s += " \n";
      s += "No Selection\n";
    } else if (roi instanceof EllipseRoi) {
      s += "\nElliptical Selection\n";
      double[] p = ((EllipseRoi) roi).getParams();
      double dx = p[2] - p[0];
      double dy = p[3] - p[1];
      double major = Math.sqrt(dx * dx + dy * dy);
      s += "  Major: " + IJ.d2s(major, 2) + "\n";
      s += "  Minor: " + IJ.d2s(major * p[4], 2) + "\n";
      s += "  X1: " + IJ.d2s(p[0], 2) + "\n";
      s += "  Y1: " + IJ.d2s(p[1], 2) + "\n";
      s += "  X2: " + IJ.d2s(p[2], 2) + "\n";
      s += "  Y2: " + IJ.d2s(p[3], 2) + "\n";
      s += "  Aspect ratio: " + IJ.d2s(p[4], 2) + "\n";
    } else {
      s += " \n";
      s += roi.getTypeAsString() + " Selection";
      String points = null;
      if (roi instanceof PointRoi) {
        int npoints = ((PolygonRoi) roi).getNCoordinates();
        String suffix = npoints > 1 ? "s)" : ")";
        points = " (" + npoints + " point" + suffix;
      }
      String name = roi.getName();
      if (name != null) {
        s += " (\"" + name + "\")";
        if (points != null) s += "\n " + points;
      } else if (points != null) s += points;
      s += "\n";
      Rectangle r = roi.getBounds();
      if (roi instanceof Line) {
        Line line = (Line) roi;
        s += "  X1: " + IJ.d2s(line.x1d * cal.pixelWidth) + "\n";
        s += "  Y1: " + IJ.d2s(yy(line.y1d, imp) * cal.pixelHeight) + "\n";
        s += "  X2: " + IJ.d2s(line.x2d * cal.pixelWidth) + "\n";
        s += "  Y2: " + IJ.d2s(yy(line.y2d, imp) * cal.pixelHeight) + "\n";
      } else if (cal.scaled()) {
        s += "  X: " + IJ.d2s(cal.getX(r.x)) + " (" + r.x + ")\n";
        s += "  Y: " + IJ.d2s(cal.getY(r.y, imp.getHeight())) + " (" + r.y + ")\n";
        s += "  Width: " + IJ.d2s(r.width * cal.pixelWidth) + " (" + r.width + ")\n";
        s += "  Height: " + IJ.d2s(r.height * cal.pixelHeight) + " (" + r.height + ")\n";
      } else {
        s += "  X: " + r.x + "\n";
        s += "  Y: " + yy(r.y, imp) + "\n";
        s += "  Width: " + r.width + "\n";
        s += "  Height: " + r.height + "\n";
      }
    }

    return s;
  }
Esempio n. 10
0
  public void mousePressed(MouseEvent e) {
    // if (ij==null) return;
    showCursorStatus = true;
    int toolID = Toolbar.getToolId();
    ImageWindow win = imp.getWindow();
    if (win != null && win.running2 && toolID != Toolbar.MAGNIFIER) {
      if (win instanceof StackWindow) ((StackWindow) win).setAnimate(false);
      else win.running2 = false;
      return;
    }

    int x = e.getX();
    int y = e.getY();
    flags = e.getModifiers();
    // IJ.log("Mouse pressed: " + e.isPopupTrigger() + "  " + ij.modifiers(flags));
    // if (toolID!=Toolbar.MAGNIFIER && e.isPopupTrigger()) {
    if (toolID != Toolbar.MAGNIFIER
        && (e.isPopupTrigger() || (!IJ.isMacintosh() && (flags & Event.META_MASK) != 0))) {
      handlePopupMenu(e);
      return;
    }

    int ox = offScreenX(x);
    int oy = offScreenY(y);
    xMouse = ox;
    yMouse = oy;
    if (IJ.spaceBarDown()) {
      // temporarily switch to "hand" tool of space bar down
      setupScroll(ox, oy);
      return;
    }
    if (showAllROIs) {
      Roi roi = imp.getRoi();
      if (!(roi != null && (roi.contains(ox, oy) || roi.isHandle(x, y) >= 0))
          && roiManagerSelect(x, y)) return;
    }
    if (customRoi && overlay != null) return;

    switch (toolID) {
      case Toolbar.MAGNIFIER:
        if (IJ.shiftKeyDown()) zoomToSelection(ox, oy);
        else if ((flags & (Event.ALT_MASK | Event.META_MASK | Event.CTRL_MASK)) != 0) {
          // IJ.run("Out");
          zoomOut(x, y);
          if (getMagnification() < 1.0) imp.repaintWindow();
        } else {
          // IJ.run("In");
          zoomIn(x, y);
          if (getMagnification() <= 1.0) imp.repaintWindow();
        }
        break;
      case Toolbar.HAND:
        setupScroll(ox, oy);
        break;
      case Toolbar.DROPPER:
        setDrawingColor(ox, oy, IJ.altKeyDown());
        break;
      case Toolbar.WAND:
        Roi roi = imp.getRoi();
        if (roi != null && roi.contains(ox, oy)) {
          Rectangle r = roi.getBounds();
          if (r.width == imageWidth && r.height == imageHeight) imp.killRoi();
          else if (!e.isAltDown()) {
            handleRoiMouseDown(e);
            return;
          }
        }
        if (roi != null) {
          int handle = roi.isHandle(x, y);
          if (handle >= 0) {
            roi.mouseDownInHandle(handle, x, y);
            return;
          }
        }
        setRoiModState(e, roi, -1);
        String mode = WandToolOptions.getMode();
        double tolerance = WandToolOptions.getTolerance();
        int npoints = IJ.doWand(ox, oy, tolerance, mode);
        if (Recorder.record && npoints > 0) {
          if (tolerance == 0.0 && mode.equals("Legacy")) Recorder.record("doWand", ox, oy);
          else
            Recorder.recordString(
                "doWand(" + ox + ", " + oy + ", " + tolerance + ", \"" + mode + "\");\n");
        }
        break;
      case Toolbar.OVAL:
        if (Toolbar.getBrushSize() > 0) new RoiBrush();
        else handleRoiMouseDown(e);
        break;
      case Toolbar.SPARE1:
      case Toolbar.SPARE2:
      case Toolbar.SPARE3:
      case Toolbar.SPARE4:
      case Toolbar.SPARE5:
      case Toolbar.SPARE6:
      case Toolbar.SPARE7:
      case Toolbar.SPARE8:
      case Toolbar.SPARE9:
        Toolbar.getInstance().runMacroTool(toolID);
        break;
      default: // selection tool
        handleRoiMouseDown(e);
    }
  }