/*.................................................................................................................*/
public Snapshot getSnapshot(MesquiteFile file) {
Snapshot temp = new Snapshot();
temp.addLine(
"setColor "
+ ColorDistribution.getStandardColorName(
ColorDistribution.getStandardColor((int) currentColor)));
temp.addLine("removeColor " + removeColor.toOffOnString());
return temp;
}
/**
* Places into Color array the colors at the node, and returns the number of colors. Uses passed
* stateColors as color key. If null is passed, uses color system of parent data (using maxState
* of this StsOfCharcter) or, if there is not parent data object, the default colors.
*/
public int getColorsAtNode(
int node, ColorDistribution colors, MesquiteColorTable stateColors, boolean showWeights) {
int numBinBoundaries = 10;
double[] binBoundaries = stateColors.getPreferredBinBoundaries();
if (binBoundaries != null) numBinBoundaries = binBoundaries.length;
for (int i = 0; i < 10; i++) colors.initialize();
if (getNumItems() == 1) {
double s = firstItem.getValue(node);
colors.setWeight(0, 1.0);
if (!MesquiteDouble.isCombinable(s)) colors.setColor(0, ColorDistribution.unassigned);
else {
int place =
getPlace(s, stateColors); // (int)(((s-minState)/(maxState-minState))*numBinBoundaries);
colors.setColor(0, stateColors.getColor(numBinBoundaries, place));
}
} else {
for (int i = 0; i < getNumItems(); i++) {
double s = getState(node, i);
colors.setWeight(i, 1.0 / getNumItems());
if (!MesquiteDouble.isCombinable(s)) colors.setColor(0, ColorDistribution.unassigned);
else {
int place =
getPlace(
s, stateColors); // (int)(((s-minState)/(maxState-minState))*numBinBoundaries);
colors.setColor(i, stateColors.getColor(numBinBoundaries, place));
}
}
}
return getNumItems();
}
/**
* places into the already instantiated ColorDistribution the colors corresponding to the
* CharacterState, and returns the number of colors. Uses default colors. Mode is
* MesquiteColorTable.GRAYSCALE, COLORS, COLORS_NO_BW, or DEFAULT (default depends on subclass)
*/
public int getColorsOfState(
CharacterState state, ColorDistribution colors, MesquiteColorTable colorTable) {
if (colors == null || state == null || !(state instanceof ContinuousState)) return 0;
int numBinBoundaries = 10;
double[] binBoundaries = colorTable.getPreferredBinBoundaries();
if (binBoundaries != null) numBinBoundaries = binBoundaries.length;
colors.initialize();
ContinuousState cState = (ContinuousState) state;
if (cState.getNumItems() == 1) {
double s = cState.getValue(0);
colors.setWeight(0, 1.0);
if (!MesquiteDouble.isCombinable(s)) colors.setColor(0, Color.white);
else {
int place =
getPlace(s, colorTable); // (int)(((s-minState)/(maxState-minState))*numBinBoundaries);
colors.setColor(
0,
colorTable.getColor(
numBinBoundaries, place)); // bug fixed in 1. 12 that had been introduced in 1. 10
// colors.setColor(0, colorTable.getColor(s, minState, maxState)); 1.10 to 1.11
}
} else {
for (int i = 0; i < cState.getNumItems(); i++) {
double s = cState.getValue(i);
colors.setWeight(i, 1.0 / cState.getNumItems());
if (!MesquiteDouble.isCombinable(s)) colors.setColor(0, Color.white);
else {
int place =
getPlace(
s, colorTable); // (int)(((s-minState)/(maxState-minState))*numBinBoundaries);
colors.setColor(
i,
colorTable.getColor(
numBinBoundaries, place)); // bug fixed in 1. 12 that had been introduced in 1. 10
// colors.setColor(i, colorTable.getColor(s, minState, maxState)); 1.10 to 1.11
}
}
}
return cState.getNumItems();
}