Esempio n. 1
0
  public Tessellator getSubTessellatorImpl(int i) {
    for (int j = 0; j < subTextures.length; j++) {
      int l = subTextures[j];
      if (l == i) {
        Tessellator tessellator1 = subTessellators[j];
        return tessellator1;
      }
    }

    for (int k = 0; k < subTextures.length; k++) {
      int i1 = subTextures[k];
      if (i1 <= 0) {
        Tessellator tessellator2 = subTessellators[k];
        subTextures[k] = i;
        return tessellator2;
      }
    }

    Tessellator tessellator = new Tessellator();
    Tessellator atessellator[] = subTessellators;
    int ai[] = subTextures;
    subTessellators = new Tessellator[atessellator.length + 1];
    subTextures = new int[ai.length + 1];
    System.arraycopy(atessellator, 0, subTessellators, 0, atessellator.length);
    System.arraycopy(ai, 0, subTextures, 0, ai.length);
    subTessellators[atessellator.length] = tessellator;
    subTextures[ai.length] = i;
    Config.dbg(
        (new StringBuilder())
            .append("Allocated subtessellator, count: ")
            .append(subTessellators.length)
            .toString());
    return tessellator;
  }
 /**
  * Sets the substitution characters to use when the converter is in substitution mode. The given
  * chars must not be longer than the value returned by getMaxCharsPerByte for this converter.
  *
  * @param chars the substitution chars
  * @exception IllegalArgumentException if given byte array is longer than the value returned by
  *     the method getMaxBytesPerChar.
  * @see #setSubstitutionMode
  * @see #getMaxBytesPerChar
  */
 public void setSubstitutionChars(char[] chars) throws IllegalArgumentException {
   if (decoder != null) decoder.replaceWith(new String(chars));
   else { // only provided for subclasses
     if (chars.length > getMaxCharsPerByte()) throw new IllegalArgumentException();
     subChars = new char[chars.length];
     System.arraycopy(chars, 0, subChars, 0, chars.length);
   }
 }
Esempio n. 3
0
  public static void runTests() {
    try {

      // SHA1 sha1Jmule = new SHA1();
      MessageDigest sha1Sun = MessageDigest.getInstance("SHA-1");
      SHA1 sha1Gudy = new SHA1();
      // SHA1Az shaGudyResume = new SHA1Az();

      ByteBuffer buffer = ByteBuffer.allocate(1024 * 1024);

      File dir = new File(dirname);
      File[] files = dir.listFiles();

      for (int i = 0; i < files.length; i++) {
        FileChannel fc = new RandomAccessFile(files[i], "r").getChannel();

        System.out.println("Testing " + files[i].getName() + " ...");

        while (fc.position() < fc.size()) {
          fc.read(buffer);
          buffer.flip();

          byte[] raw = new byte[buffer.limit()];
          System.arraycopy(buffer.array(), 0, raw, 0, raw.length);

          sha1Gudy.update(buffer);
          sha1Gudy.saveState();
          ByteBuffer bb = ByteBuffer.wrap(new byte[56081]);
          sha1Gudy.digest(bb);
          sha1Gudy.restoreState();

          sha1Sun.update(raw);

          buffer.clear();
        }

        byte[] sun = sha1Sun.digest();
        sha1Sun.reset();

        byte[] gudy = sha1Gudy.digest();
        sha1Gudy.reset();

        if (Arrays.equals(sun, gudy)) {
          System.out.println("  SHA1-Gudy: OK");
        } else {
          System.out.println("  SHA1-Gudy: FAILED");
        }

        buffer.clear();
        fc.close();
        System.out.println();
      }

    } catch (Throwable e) {
      Debug.printStackTrace(e);
    }
  }
Esempio n. 4
0
  /**
   * Remove the first line from the passed byte array.
   *
   * @param inputArray The byte array to process
   * @return The processed byte array
   */
  private static byte[] removeFirstLine(byte[] inputArray) {
    int offset = 0;

    while (offset < inputArray.length && (inputArray[offset] == 10 || inputArray[offset] == 13))
      offset++;
    while (offset < inputArray.length && inputArray[offset] != 10 && inputArray[offset] != 13)
      offset++;
    while (offset < inputArray.length && (inputArray[offset] == 10 || inputArray[offset] == 13))
      offset++;

    byte[] newArray = new byte[inputArray.length - offset];
    System.arraycopy(inputArray, offset, newArray, 0, newArray.length);

    return newArray;
  }
  /**
   * Concat arrays in one.
   *
   * @param arrays Arrays.
   * @return Summary array.
   */
  public static int[] concat(int[]... arrays) {
    assert arrays != null;
    assert arrays.length > 1;

    int len = 0;

    for (int[] a : arrays) len += a.length;

    int[] r = Arrays.copyOf(arrays[0], len);

    for (int i = 1, shift = 0; i < arrays.length; i++) {
      shift += arrays[i - 1].length;
      System.arraycopy(arrays[i], 0, r, shift, arrays[i].length);
    }

    return r;
  }
Esempio n. 6
0
 public void draw(float[] mvp, float x, float y) {
   float[] mvpMatrix = new float[16];
   System.arraycopy(mvp, 0, mvpMatrix, 0, 16);
   Matrix.setIdentityM(transMatrix, 0);
   //
   glBase.translate(transMatrix, x, y, 0);
   Matrix.multiplyMM(mvpMatrix, 0, transMatrix, 0, mvpMatrix, 0);
   GLES20.glUseProgram(mProgram);
   mPositionHandle = GLES20.glGetAttribLocation(mProgram, "vPosition");
   GLES20.glEnableVertexAttribArray(mPositionHandle);
   GLES20.glVertexAttribPointer(
       mPositionHandle, COORDS_PER_VERTEX, GLES20.GL_FLOAT, false, vertexStride, vertexBuffer);
   mColorHandle = GLES20.glGetUniformLocation(mProgram, "vColor");
   GLES20.glUniform4fv(mColorHandle, 1, color, 0);
   mMVPMatrixHandle = GLES20.glGetUniformLocation(mProgram, "uMVPMatrix");
   checkGlError("glGetUniformLocation");
   GLES20.glUniformMatrix4fv(mMVPMatrixHandle, 1, false, mvpMatrix, 0);
   checkGlError("glUniformMatrix4fv");
   GLES20.glDrawArrays(GLES20.GL_LINE_LOOP, 0, vertexCount);
   GLES20.glDisableVertexAttribArray(mPositionHandle);
 }
  /**
   * Converts an array of bytes containing characters in an external encoding into an array of
   * Unicode characters. Unlike convert, this method does not do incremental conversion. It assumes
   * that the given input array contains all the characters to be converted. The state of the
   * converter is reset at the beginning of this method and is left in the reset state on successful
   * termination. The converter is not reset if an exception is thrown. This allows the caller to
   * determine where the bad input was encountered by calling nextByteIndex.
   *
   * <p>This method uses substitution mode when performing the conversion. The method
   * setSubstitutionChars may be used to determine what characters are substituted. Even though
   * substitution mode is used, the state of the converter's substitution mode is not changed at the
   * end of this method.
   *
   * @return an array of chars containing the converted characters.
   * @param input array containing Unicode characters to be converted.
   * @exception MalformedInputException if the input buffer contains any sequence of chars that is
   *     illegal in the input character encoding. After this exception is thrown, the method
   *     nextByteIndex can be called to obtain the index of the first invalid input byte and
   *     getBadInputLength can be called to determine the length of the invalid input.
   * @see #nextByteIndex
   * @see #setSubstitutionMode
   * @see sun.io.CharToByteConverter#setSubstitutionBytes(byte[])
   * @see #getBadInputLength
   */
  public char[] convertAll(byte[] input) throws MalformedInputException {
    reset();
    boolean savedSubMode = subMode;
    setSubstitutionMode(true);
    char[] output = new char[getMaxCharsPerByte() * input.length];

    try {
      int outputLength = convert(input, 0, input.length, output, 0, output.length);
      outputLength += flush(output, outputLength, output.length);
      char[] returnedOutput = new char[outputLength];
      System.arraycopy(output, 0, returnedOutput, 0, outputLength);
      return returnedOutput;
    } catch (ConversionBufferFullException e) {
      // Not supposed to happen. If it does, getMaxCharsPerByte() lied.
      throw new InternalError("this.getMaxCharsBerByte returned bad value");
    } catch (UnknownCharacterException e) {
      // Not supposed to happen since we're in substitution mode.
      throw new InternalError();
    } finally {
      setSubstitutionMode(savedSubMode);
    }
  }
 private void dispatchMessage(
     TcpAddress incomingAddress, ByteBuffer byteBuffer, long bytesRead) {
   byteBuffer.flip();
   if (logger.isDebugEnabled()) {
     logger.debug(
         "Received message from "
             + incomingAddress
             + " with length "
             + bytesRead
             + ": "
             + new OctetString(byteBuffer.array(), 0, (int) bytesRead).toHexString());
   }
   ByteBuffer bis;
   if (isAsyncMsgProcessingSupported()) {
     byte[] bytes = new byte[(int) bytesRead];
     System.arraycopy(byteBuffer.array(), 0, bytes, 0, (int) bytesRead);
     bis = ByteBuffer.wrap(bytes);
   } else {
     bis = ByteBuffer.wrap(byteBuffer.array(), 0, (int) bytesRead);
   }
   fireProcessMessage(incomingAddress, bis);
 }
Esempio n. 9
0
 /** Unconditionally expand the comment buffer. */
 private void expandCommentBuffer() {
   char[] newBuffer = new char[docCommentBuffer.length * 2];
   System.arraycopy(docCommentBuffer, 0, newBuffer, 0, docCommentBuffer.length);
   docCommentBuffer = newBuffer;
 }
  public void build_bricks() {

    ImagePlus imp;
    ImagePlus orgimp;
    ImageStack stack;
    FileInfo finfo;

    if (lvImgTitle.isEmpty()) return;
    orgimp = WindowManager.getImage(lvImgTitle.get(0));
    imp = orgimp;

    finfo = imp.getFileInfo();
    if (finfo == null) return;

    int[] dims = imp.getDimensions();
    int imageW = dims[0];
    int imageH = dims[1];
    int nCh = dims[2];
    int imageD = dims[3];
    int nFrame = dims[4];
    int bdepth = imp.getBitDepth();
    double xspc = finfo.pixelWidth;
    double yspc = finfo.pixelHeight;
    double zspc = finfo.pixelDepth;
    double z_aspect = Math.max(xspc, yspc) / zspc;

    int orgW = imageW;
    int orgH = imageH;
    int orgD = imageD;
    double orgxspc = xspc;
    double orgyspc = yspc;
    double orgzspc = zspc;

    lv = lvImgTitle.size();
    if (filetype == "JPEG") {
      for (int l = 0; l < lv; l++) {
        if (WindowManager.getImage(lvImgTitle.get(l)).getBitDepth() != 8) {
          IJ.error("A SOURCE IMAGE MUST BE 8BIT GLAYSCALE");
          return;
        }
      }
    }

    // calculate levels
    /*		int baseXY = 256;
    		int baseZ = 256;

    		if (z_aspect < 0.5) baseZ = 128;
    		if (z_aspect > 2.0) baseXY = 128;
    		if (z_aspect >= 0.5 && z_aspect < 1.0) baseZ = (int)(baseZ*z_aspect);
    		if (z_aspect > 1.0 && z_aspect <= 2.0) baseXY = (int)(baseXY/z_aspect);

    		IJ.log("Z_aspect: " + z_aspect);
    		IJ.log("BaseXY: " + baseXY);
    		IJ.log("BaseZ: " + baseZ);
    */

    int baseXY = 256;
    int baseZ = 128;
    int dbXY = Math.max(orgW, orgH) / baseXY;
    if (Math.max(orgW, orgH) % baseXY > 0) dbXY *= 2;
    int dbZ = orgD / baseZ;
    if (orgD % baseZ > 0) dbZ *= 2;
    lv = Math.max(log2(dbXY), log2(dbZ)) + 1;

    int ww = orgW;
    int hh = orgH;
    int dd = orgD;
    for (int l = 0; l < lv; l++) {
      int bwnum = ww / baseXY;
      if (ww % baseXY > 0) bwnum++;
      int bhnum = hh / baseXY;
      if (hh % baseXY > 0) bhnum++;
      int bdnum = dd / baseZ;
      if (dd % baseZ > 0) bdnum++;

      if (bwnum % 2 == 0) bwnum++;
      if (bhnum % 2 == 0) bhnum++;
      if (bdnum % 2 == 0) bdnum++;

      int bw = (bwnum <= 1) ? ww : ww / bwnum + 1 + (ww % bwnum > 0 ? 1 : 0);
      int bh = (bhnum <= 1) ? hh : hh / bhnum + 1 + (hh % bhnum > 0 ? 1 : 0);
      int bd = (bdnum <= 1) ? dd : dd / bdnum + 1 + (dd % bdnum > 0 ? 1 : 0);

      bwlist.add(bw);
      bhlist.add(bh);
      bdlist.add(bd);

      IJ.log("LEVEL: " + l);
      IJ.log("  width: " + ww);
      IJ.log("  hight: " + hh);
      IJ.log("  depth: " + dd);
      IJ.log("  bw: " + bw);
      IJ.log("  bh: " + bh);
      IJ.log("  bd: " + bd);

      int xyl2 = Math.max(ww, hh) / baseXY;
      if (Math.max(ww, hh) % baseXY > 0) xyl2 *= 2;
      if (lv - 1 - log2(xyl2) <= l) {
        ww /= 2;
        hh /= 2;
      }
      IJ.log("  xyl2: " + (lv - 1 - log2(xyl2)));

      int zl2 = dd / baseZ;
      if (dd % baseZ > 0) zl2 *= 2;
      if (lv - 1 - log2(zl2) <= l) dd /= 2;
      IJ.log("  zl2: " + (lv - 1 - log2(zl2)));

      if (l < lv - 1) {
        lvImgTitle.add(lvImgTitle.get(0) + "_level" + (l + 1));
        IJ.selectWindow(lvImgTitle.get(0));
        IJ.run(
            "Scale...",
            "x=- y=- z=- width="
                + ww
                + " height="
                + hh
                + " depth="
                + dd
                + " interpolation=Bicubic average process create title="
                + lvImgTitle.get(l + 1));
      }
    }

    for (int l = 0; l < lv; l++) {
      IJ.log(lvImgTitle.get(l));
    }

    Document doc = newXMLDocument();
    Element root = doc.createElement("BRK");
    root.setAttribute("version", "1.0");
    root.setAttribute("nLevel", String.valueOf(lv));
    root.setAttribute("nChannel", String.valueOf(nCh));
    root.setAttribute("nFrame", String.valueOf(nFrame));
    doc.appendChild(root);

    for (int l = 0; l < lv; l++) {
      IJ.showProgress(0.0);

      int[] dims2 = imp.getDimensions();
      IJ.log(
          "W: "
              + String.valueOf(dims2[0])
              + " H: "
              + String.valueOf(dims2[1])
              + " C: "
              + String.valueOf(dims2[2])
              + " D: "
              + String.valueOf(dims2[3])
              + " T: "
              + String.valueOf(dims2[4])
              + " b: "
              + String.valueOf(bdepth));

      bw = bwlist.get(l).intValue();
      bh = bhlist.get(l).intValue();
      bd = bdlist.get(l).intValue();

      boolean force_pow2 = false;
      /*			if(IsPowerOf2(bw) && IsPowerOf2(bh) && IsPowerOf2(bd)) force_pow2 = true;

      			if(force_pow2){
      				//force pow2
      				if(Pow2(bw) > bw) bw = Pow2(bw)/2;
      				if(Pow2(bh) > bh) bh = Pow2(bh)/2;
      				if(Pow2(bd) > bd) bd = Pow2(bd)/2;
      			}

      			if(bw > imageW) bw = (Pow2(imageW) == imageW) ? imageW : Pow2(imageW)/2;
      			if(bh > imageH) bh = (Pow2(imageH) == imageH) ? imageH : Pow2(imageH)/2;
      			if(bd > imageD) bd = (Pow2(imageD) == imageD) ? imageD : Pow2(imageD)/2;

      */
      if (bw > imageW) bw = imageW;
      if (bh > imageH) bh = imageH;
      if (bd > imageD) bd = imageD;

      if (bw <= 1 || bh <= 1 || bd <= 1) break;

      if (filetype == "JPEG" && (bw < 8 || bh < 8)) break;

      Element lvnode = doc.createElement("Level");
      lvnode.setAttribute("lv", String.valueOf(l));
      lvnode.setAttribute("imageW", String.valueOf(imageW));
      lvnode.setAttribute("imageH", String.valueOf(imageH));
      lvnode.setAttribute("imageD", String.valueOf(imageD));
      lvnode.setAttribute("xspc", String.valueOf(xspc));
      lvnode.setAttribute("yspc", String.valueOf(yspc));
      lvnode.setAttribute("zspc", String.valueOf(zspc));
      lvnode.setAttribute("bitDepth", String.valueOf(bdepth));
      root.appendChild(lvnode);

      Element brksnode = doc.createElement("Bricks");
      brksnode.setAttribute("brick_baseW", String.valueOf(bw));
      brksnode.setAttribute("brick_baseH", String.valueOf(bh));
      brksnode.setAttribute("brick_baseD", String.valueOf(bd));
      lvnode.appendChild(brksnode);

      ArrayList<Brick> bricks = new ArrayList<Brick>();
      int mw, mh, md, mw2, mh2, md2;
      double tx0, ty0, tz0, tx1, ty1, tz1;
      double bx0, by0, bz0, bx1, by1, bz1;
      for (int k = 0; k < imageD; k += bd) {
        if (k > 0) k--;
        for (int j = 0; j < imageH; j += bh) {
          if (j > 0) j--;
          for (int i = 0; i < imageW; i += bw) {
            if (i > 0) i--;
            mw = Math.min(bw, imageW - i);
            mh = Math.min(bh, imageH - j);
            md = Math.min(bd, imageD - k);

            if (force_pow2) {
              mw2 = Pow2(mw);
              mh2 = Pow2(mh);
              md2 = Pow2(md);
            } else {
              mw2 = mw;
              mh2 = mh;
              md2 = md;
            }

            if (filetype == "JPEG") {
              if (mw2 < 8) mw2 = 8;
              if (mh2 < 8) mh2 = 8;
            }

            tx0 = i == 0 ? 0.0d : ((mw2 - mw + 0.5d) / mw2);
            ty0 = j == 0 ? 0.0d : ((mh2 - mh + 0.5d) / mh2);
            tz0 = k == 0 ? 0.0d : ((md2 - md + 0.5d) / md2);

            tx1 = 1.0d - 0.5d / mw2;
            if (mw < bw) tx1 = 1.0d;
            if (imageW - i == bw) tx1 = 1.0d;

            ty1 = 1.0d - 0.5d / mh2;
            if (mh < bh) ty1 = 1.0d;
            if (imageH - j == bh) ty1 = 1.0d;

            tz1 = 1.0d - 0.5d / md2;
            if (md < bd) tz1 = 1.0d;
            if (imageD - k == bd) tz1 = 1.0d;

            bx0 = i == 0 ? 0.0d : (i + 0.5d) / (double) imageW;
            by0 = j == 0 ? 0.0d : (j + 0.5d) / (double) imageH;
            bz0 = k == 0 ? 0.0d : (k + 0.5d) / (double) imageD;

            bx1 = Math.min((i + bw - 0.5d) / (double) imageW, 1.0d);
            if (imageW - i == bw) bx1 = 1.0d;

            by1 = Math.min((j + bh - 0.5d) / (double) imageH, 1.0d);
            if (imageH - j == bh) by1 = 1.0d;

            bz1 = Math.min((k + bd - 0.5d) / (double) imageD, 1.0d);
            if (imageD - k == bd) bz1 = 1.0d;

            int x, y, z;
            x = i - (mw2 - mw);
            y = j - (mh2 - mh);
            z = k - (md2 - md);
            bricks.add(
                new Brick(
                    x, y, z, mw2, mh2, md2, 0, 0, tx0, ty0, tz0, tx1, ty1, tz1, bx0, by0, bz0, bx1,
                    by1, bz1));
          }
        }
      }

      Element fsnode = doc.createElement("Files");
      lvnode.appendChild(fsnode);

      stack = imp.getStack();

      int totalbricknum = nFrame * nCh * bricks.size();
      int curbricknum = 0;
      for (int f = 0; f < nFrame; f++) {
        for (int ch = 0; ch < nCh; ch++) {
          int sizelimit = bdsizelimit * 1024 * 1024;
          int bytecount = 0;
          int filecount = 0;
          int pd_bufsize = Math.max(sizelimit, bw * bh * bd * bdepth / 8);
          byte[] packed_data = new byte[pd_bufsize];
          String base_dataname =
              basename
                  + "_Lv"
                  + String.valueOf(l)
                  + "_Ch"
                  + String.valueOf(ch)
                  + "_Fr"
                  + String.valueOf(f);
          String current_dataname = base_dataname + "_data" + filecount;

          Brick b_first = bricks.get(0);
          if (b_first.z_ != 0) IJ.log("warning");
          int st_z = b_first.z_;
          int ed_z = b_first.z_ + b_first.d_;
          LinkedList<ImageProcessor> iplist = new LinkedList<ImageProcessor>();
          for (int s = st_z; s < ed_z; s++)
            iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));

          //					ImagePlus test;
          //					ImageStack tsst;
          //					test = NewImage.createByteImage("test", imageW, imageH, imageD,
          // NewImage.FILL_BLACK);
          //					tsst = test.getStack();
          for (int i = 0; i < bricks.size(); i++) {
            Brick b = bricks.get(i);

            if (ed_z > b.z_ || st_z < b.z_ + b.d_) {
              if (b.z_ > st_z) {
                for (int s = 0; s < b.z_ - st_z; s++) iplist.pollFirst();
                st_z = b.z_;
              } else if (b.z_ < st_z) {
                IJ.log("warning");
                for (int s = st_z - 1; s > b.z_; s--)
                  iplist.addFirst(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
                st_z = b.z_;
              }

              if (b.z_ + b.d_ > ed_z) {
                for (int s = ed_z; s < b.z_ + b.d_; s++)
                  iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
                ed_z = b.z_ + b.d_;
              } else if (b.z_ + b.d_ < ed_z) {
                IJ.log("warning");
                for (int s = 0; s < ed_z - (b.z_ + b.d_); s++) iplist.pollLast();
                ed_z = b.z_ + b.d_;
              }
            } else {
              IJ.log("warning");
              iplist.clear();
              st_z = b.z_;
              ed_z = b.z_ + b.d_;
              for (int s = st_z; s < ed_z; s++)
                iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
            }

            if (iplist.size() != b.d_) {
              IJ.log("Stack Error");
              return;
            }

            //						int zz = st_z;

            int bsize = 0;
            byte[] bdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8];
            Iterator<ImageProcessor> ipite = iplist.iterator();
            while (ipite.hasNext()) {

              //							ImageProcessor tsip = tsst.getProcessor(zz+1);

              ImageProcessor ip = ipite.next();
              ip.setRoi(b.x_, b.y_, b.w_, b.h_);
              if (bdepth == 8) {
                byte[] data = (byte[]) ip.crop().getPixels();
                System.arraycopy(data, 0, bdata, bsize, data.length);
                bsize += data.length;
              } else if (bdepth == 16) {
                ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8);
                buffer.order(ByteOrder.LITTLE_ENDIAN);
                short[] data = (short[]) ip.crop().getPixels();
                for (short e : data) buffer.putShort(e);
                System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length);
                bsize += buffer.array().length;
              } else if (bdepth == 32) {
                ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8);
                buffer.order(ByteOrder.LITTLE_ENDIAN);
                float[] data = (float[]) ip.crop().getPixels();
                for (float e : data) buffer.putFloat(e);
                System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length);
                bsize += buffer.array().length;
              }
            }

            String filename =
                basename
                    + "_Lv"
                    + String.valueOf(l)
                    + "_Ch"
                    + String.valueOf(ch)
                    + "_Fr"
                    + String.valueOf(f)
                    + "_ID"
                    + String.valueOf(i);

            int offset = bytecount;
            int datasize = bdata.length;

            if (filetype == "RAW") {
              int dummy = -1;
              // do nothing
            }
            if (filetype == "JPEG" && bdepth == 8) {
              try {
                DataBufferByte db = new DataBufferByte(bdata, datasize);
                Raster raster = Raster.createPackedRaster(db, b.w_, b.h_ * b.d_, 8, null);
                BufferedImage img =
                    new BufferedImage(b.w_, b.h_ * b.d_, BufferedImage.TYPE_BYTE_GRAY);
                img.setData(raster);
                ByteArrayOutputStream baos = new ByteArrayOutputStream();
                ImageOutputStream ios = ImageIO.createImageOutputStream(baos);
                String format = "jpg";
                Iterator<javax.imageio.ImageWriter> iter =
                    ImageIO.getImageWritersByFormatName("jpeg");
                javax.imageio.ImageWriter writer = iter.next();
                ImageWriteParam iwp = writer.getDefaultWriteParam();
                iwp.setCompressionMode(ImageWriteParam.MODE_EXPLICIT);
                iwp.setCompressionQuality((float) jpeg_quality * 0.01f);
                writer.setOutput(ios);
                writer.write(null, new IIOImage(img, null, null), iwp);
                // ImageIO.write(img, format, baos);
                bdata = baos.toByteArray();
                datasize = bdata.length;
              } catch (IOException e) {
                e.printStackTrace();
                return;
              }
            }
            if (filetype == "ZLIB") {
              byte[] tmpdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8];
              Deflater compresser = new Deflater();
              compresser.setInput(bdata);
              compresser.setLevel(Deflater.DEFAULT_COMPRESSION);
              compresser.setStrategy(Deflater.DEFAULT_STRATEGY);
              compresser.finish();
              datasize = compresser.deflate(tmpdata);
              bdata = tmpdata;
              compresser.end();
            }

            if (bytecount + datasize > sizelimit && bytecount > 0) {
              BufferedOutputStream fis = null;
              try {
                File file = new File(directory + current_dataname);
                fis = new BufferedOutputStream(new FileOutputStream(file));
                fis.write(packed_data, 0, bytecount);
              } catch (IOException e) {
                e.printStackTrace();
                return;
              } finally {
                try {
                  if (fis != null) fis.close();
                } catch (IOException e) {
                  e.printStackTrace();
                  return;
                }
              }
              filecount++;
              current_dataname = base_dataname + "_data" + filecount;
              bytecount = 0;
              offset = 0;
              System.arraycopy(bdata, 0, packed_data, bytecount, datasize);
              bytecount += datasize;
            } else {
              System.arraycopy(bdata, 0, packed_data, bytecount, datasize);
              bytecount += datasize;
            }

            Element filenode = doc.createElement("File");
            filenode.setAttribute("filename", current_dataname);
            filenode.setAttribute("channel", String.valueOf(ch));
            filenode.setAttribute("frame", String.valueOf(f));
            filenode.setAttribute("brickID", String.valueOf(i));
            filenode.setAttribute("offset", String.valueOf(offset));
            filenode.setAttribute("datasize", String.valueOf(datasize));
            filenode.setAttribute("filetype", String.valueOf(filetype));

            fsnode.appendChild(filenode);

            curbricknum++;
            IJ.showProgress((double) (curbricknum) / (double) (totalbricknum));
          }
          if (bytecount > 0) {
            BufferedOutputStream fis = null;
            try {
              File file = new File(directory + current_dataname);
              fis = new BufferedOutputStream(new FileOutputStream(file));
              fis.write(packed_data, 0, bytecount);
            } catch (IOException e) {
              e.printStackTrace();
              return;
            } finally {
              try {
                if (fis != null) fis.close();
              } catch (IOException e) {
                e.printStackTrace();
                return;
              }
            }
          }
        }
      }

      for (int i = 0; i < bricks.size(); i++) {
        Brick b = bricks.get(i);
        Element bricknode = doc.createElement("Brick");
        bricknode.setAttribute("id", String.valueOf(i));
        bricknode.setAttribute("st_x", String.valueOf(b.x_));
        bricknode.setAttribute("st_y", String.valueOf(b.y_));
        bricknode.setAttribute("st_z", String.valueOf(b.z_));
        bricknode.setAttribute("width", String.valueOf(b.w_));
        bricknode.setAttribute("height", String.valueOf(b.h_));
        bricknode.setAttribute("depth", String.valueOf(b.d_));
        brksnode.appendChild(bricknode);

        Element tboxnode = doc.createElement("tbox");
        tboxnode.setAttribute("x0", String.valueOf(b.tx0_));
        tboxnode.setAttribute("y0", String.valueOf(b.ty0_));
        tboxnode.setAttribute("z0", String.valueOf(b.tz0_));
        tboxnode.setAttribute("x1", String.valueOf(b.tx1_));
        tboxnode.setAttribute("y1", String.valueOf(b.ty1_));
        tboxnode.setAttribute("z1", String.valueOf(b.tz1_));
        bricknode.appendChild(tboxnode);

        Element bboxnode = doc.createElement("bbox");
        bboxnode.setAttribute("x0", String.valueOf(b.bx0_));
        bboxnode.setAttribute("y0", String.valueOf(b.by0_));
        bboxnode.setAttribute("z0", String.valueOf(b.bz0_));
        bboxnode.setAttribute("x1", String.valueOf(b.bx1_));
        bboxnode.setAttribute("y1", String.valueOf(b.by1_));
        bboxnode.setAttribute("z1", String.valueOf(b.bz1_));
        bricknode.appendChild(bboxnode);
      }

      if (l < lv - 1) {
        imp = WindowManager.getImage(lvImgTitle.get(l + 1));
        int[] newdims = imp.getDimensions();
        imageW = newdims[0];
        imageH = newdims[1];
        imageD = newdims[3];
        xspc = orgxspc * ((double) orgW / (double) imageW);
        yspc = orgyspc * ((double) orgH / (double) imageH);
        zspc = orgzspc * ((double) orgD / (double) imageD);
        bdepth = imp.getBitDepth();
      }
    }

    File newXMLfile = new File(directory + basename + ".vvd");
    writeXML(newXMLfile, doc);

    for (int l = 1; l < lv; l++) {
      imp = WindowManager.getImage(lvImgTitle.get(l));
      imp.changes = false;
      imp.close();
    }
  }
Esempio n. 11
0
 public void func_991_a(double p_991_1_, double p_991_3_, double p_991_5_) {
   if (autoGrow && field_1498_o >= field_1494_B - 32) {
     Config.dbg(
         (new StringBuilder())
             .append("Expand tessellator buffer, old: ")
             .append(field_1494_B)
             .append(", new: ")
             .append(field_1494_B * 2)
             .toString());
     field_1494_B *= 2;
     int ai[] = new int[field_1494_B];
     System.arraycopy(field_1506_g, 0, ai, 0, field_1506_g.length);
     field_1506_g = ai;
     field_1509_d = GLAllocation.func_1127_b(field_1494_B * 4);
     field_1508_e = field_1509_d.asIntBuffer();
     field_1507_f = field_1509_d.asFloatBuffer();
     field_35836_g = field_1509_d.asShortBuffer();
   }
   field_1497_p++;
   if (field_1493_r == 7 && field_1511_b && field_1497_p % 4 == 0) {
     for (int i = 0; i < 2; i++) {
       int j = 8 * (3 - i);
       if (field_1500_m) {
         field_1506_g[field_1498_o + 3] = field_1506_g[(field_1498_o - j) + 3];
         field_1506_g[field_1498_o + 4] = field_1506_g[(field_1498_o - j) + 4];
       }
       if (field_35838_p) {
         field_1506_g[field_1498_o + 7] = field_1506_g[(field_1498_o - j) + 7];
       }
       if (field_1501_l) {
         field_1506_g[field_1498_o + 5] = field_1506_g[(field_1498_o - j) + 5];
       }
       field_1506_g[field_1498_o + 0] = field_1506_g[(field_1498_o - j) + 0];
       field_1506_g[field_1498_o + 1] = field_1506_g[(field_1498_o - j) + 1];
       field_1506_g[field_1498_o + 2] = field_1506_g[(field_1498_o - j) + 2];
       field_1505_h++;
       field_1498_o += 8;
     }
   }
   if (field_1500_m) {
     field_1506_g[field_1498_o + 3] = Float.floatToRawIntBits((float) field_1504_i);
     field_1506_g[field_1498_o + 4] = Float.floatToRawIntBits((float) field_1503_j);
   }
   if (field_35838_p) {
     field_1506_g[field_1498_o + 7] = field_35837_l;
   }
   if (field_1501_l) {
     field_1506_g[field_1498_o + 5] = field_1502_k;
   }
   if (field_1499_n) {
     field_1506_g[field_1498_o + 6] = field_1489_v;
   }
   field_1506_g[field_1498_o + 0] = Float.floatToRawIntBits((float) (p_991_1_ + field_1492_s));
   field_1506_g[field_1498_o + 1] = Float.floatToRawIntBits((float) (p_991_3_ + field_1491_t));
   field_1506_g[field_1498_o + 2] = Float.floatToRawIntBits((float) (p_991_5_ + field_1490_u));
   field_1498_o += 8;
   field_1505_h++;
   if (!autoGrow && field_1497_p % 4 == 0 && field_1498_o >= field_1494_B - 32) {
     func_982_a();
     field_1488_w = true;
   }
 }
 protected double[] resizeArray(double[] oldArray) {
   int newSize = 2 * oldArray.length;
   double[] newArray = new double[newSize];
   System.arraycopy(oldArray, 0, newArray, 0, oldArray.length);
   return newArray;
 }
 protected int[] resizeArray(int[] oldArray) {
   int newSize = 2 * oldArray.length;
   int[] newArray = new int[newSize];
   System.arraycopy(oldArray, 0, newArray, 0, oldArray.length);
   return newArray;
 }
Esempio n. 14
0
  /**
   * Validates incoming packet and deserializes all fields that need to be deserialized.
   *
   * @param ses Session on which packet is being parsed.
   * @param req Raw packet.
   * @return Same packet with fields deserialized.
   * @throws IOException If parsing failed.
   * @throws GridException If deserialization failed.
   */
  private GridClientMessage assemble(GridNioSession ses, GridTcpRestPacket req)
      throws IOException, GridException {
    byte[] extras = req.extras();

    // First, decode key and value, if any
    if (req.key() != null || req.value() != null) {
      short keyFlags = 0;
      short valFlags = 0;

      if (req.hasFlags()) {
        if (extras == null || extras.length < FLAGS_LENGTH)
          throw new IOException(
              "Failed to parse incoming packet (flags required for command) [ses="
                  + ses
                  + ", opCode="
                  + Integer.toHexString(req.operationCode() & 0xFF)
                  + ']');

        keyFlags = U.bytesToShort(extras, 0);
        valFlags = U.bytesToShort(extras, 2);
      }

      if (req.key() != null) {
        assert req.key() instanceof byte[];

        byte[] rawKey = (byte[]) req.key();

        // Only values can be hessian-encoded.
        req.key(decodeObj(keyFlags, rawKey));
      }

      if (req.value() != null) {
        assert req.value() instanceof byte[];

        byte[] rawVal = (byte[]) req.value();

        req.value(decodeObj(valFlags, rawVal));
      }
    }

    if (req.hasExpiration()) {
      if (extras == null || extras.length < 8)
        throw new IOException(
            "Failed to parse incoming packet (expiration value required for command) [ses="
                + ses
                + ", opCode="
                + Integer.toHexString(req.operationCode() & 0xFF)
                + ']');

      req.expiration(U.bytesToInt(extras, 4) & 0xFFFFFFFFL);
    }

    if (req.hasInitial()) {
      if (extras == null || extras.length < 16)
        throw new IOException(
            "Failed to parse incoming packet (initial value required for command) [ses="
                + ses
                + ", opCode="
                + Integer.toHexString(req.operationCode() & 0xFF)
                + ']');

      req.initial(U.bytesToLong(extras, 8));
    }

    if (req.hasDelta()) {
      if (extras == null || extras.length < 8)
        throw new IOException(
            "Failed to parse incoming packet (delta value required for command) [ses="
                + ses
                + ", opCode="
                + Integer.toHexString(req.operationCode() & 0xFF)
                + ']');

      req.delta(U.bytesToLong(extras, 0));
    }

    if (extras != null) {
      // Clients that include cache name must always include flags.
      int length = 4;

      if (req.hasExpiration()) length += 4;

      if (req.hasDelta()) length += 8;

      if (req.hasInitial()) length += 8;

      if (extras.length - length > 0) {
        byte[] cacheName = new byte[extras.length - length];

        System.arraycopy(extras, length, cacheName, 0, extras.length - length);

        req.cacheName(new String(cacheName));
      }
    }

    return req;
  }