public long updatePart(String userId, long partId, PartData part) {
Entry existing = dao.get(partId);
authorization.expectWrite(userId, existing);
Entry entry = InfoToModelFactory.updateEntryField(part, existing);
entry.getLinkedEntries().clear();
if (part.getLinkedParts() != null && part.getLinkedParts().size() > 0) {
for (PartData data : part.getLinkedParts()) {
Entry linked = dao.getByPartNumber(data.getPartId());
// check permissions on link
if (!authorization.canRead(userId, linked)) {
continue;
}
if (!canLink(entry, linked)) continue;
entry.getLinkedEntries().add(linked);
}
}
entry.setModificationTime(Calendar.getInstance().getTime());
if (entry.getVisibility() == Visibility.DRAFT.getValue()) {
List<EntryField> invalidFields = EntryUtil.validates(part);
if (invalidFields.isEmpty()) entry.setVisibility(Visibility.OK.getValue());
}
entry = dao.update(entry);
// check pi email
String piEmail = entry.getPrincipalInvestigatorEmail();
if (StringUtils.isNotEmpty(piEmail)) {
Account pi = DAOFactory.getAccountDAO().getByEmail(piEmail);
if (pi != null) {
// add write permission for the PI (method also checks to see if permission already exists)
AccessPermission accessPermission = new AccessPermission();
accessPermission.setArticle(AccessPermission.Article.ACCOUNT);
accessPermission.setArticleId(pi.getId());
accessPermission.setType(AccessPermission.Type.WRITE_ENTRY);
accessPermission.setTypeId(entry.getId());
permissionsController.addPermission(userId, accessPermission);
}
}
return entry.getId();
}
protected Entry getEntry(String id) {
Entry entry = null;
// check if numeric
try {
entry = dao.get(Long.decode(id));
} catch (NumberFormatException nfe) {
// fine to ignore
}
// check for part Id
if (entry == null) entry = dao.getByPartNumber(id);
// check for global unique id
if (entry == null) entry = dao.getByRecordId(id);
// get by unique name
if (entry == null) return dao.getByUniqueName(id);
return entry;
}