@Before public void setUp() { System.out.println("--------------- setUp() ParameterisedGroupTest"); cell = new OneSegment("Simple"); d1 = cell.addDendriticSegment( 1, "d1", new Point3f(10, 0, 0), cell.getFirstSomaSegment(), 1, "Sec1", false); d2 = cell.addDendriticSegment(2, "d2", new Point3f(20, 0, 0), d1, 1, "Sec2", false); d3 = cell.addDendriticSegment(7, "d3", new Point3f(20, 10, 0), d2, 1, "Sec3", false); d3.getSection().setStartRadius(3); d1.getSection().setNumberInternalDivisions(4); d2.getSection().setNumberInternalDivisions(3); d3.getSection().setNumberInternalDivisions(5); d3.getSection().addToGroup(tipSection); pg1 = new ParameterisedGroup( "ZeroToOne", Section.DENDRITIC_GROUP, Metric.PATH_LENGTH_FROM_ROOT, ProximalPref.MOST_PROX_AT_0, DistalPref.MOST_DIST_AT_1, "p1"); pg2 = new ParameterisedGroup( "StartToEnd", Section.DENDRITIC_GROUP, Metric.PATH_LENGTH_FROM_ROOT, ProximalPref.NO_TRANSLATION, DistalPref.NO_NORMALISATION, "p2"); pg3 = new ParameterisedGroup( "TipZeroToOne", tipSection, Metric.PATH_LENGTH_FROM_ROOT, ProximalPref.MOST_PROX_AT_0, DistalPref.MOST_DIST_AT_1, "p3"); pg4 = new ParameterisedGroup( "TipToEnd", tipSection, Metric.PATH_LENGTH_FROM_ROOT, ProximalPref.MOST_PROX_AT_0, DistalPref.NO_NORMALISATION, "p4"); pg5 = new ParameterisedGroup( "TipToEnd_PathFromRoot", tipSection, Metric.PATH_LENGTH_FROM_ROOT, ProximalPref.NO_TRANSLATION, DistalPref.NO_NORMALISATION, "p5"); /* pg5 = new ParameterisedGroup("3DDistZeroToOne", Section.ALL, Metric.THREE_D_RADIAL_POSITION, ProximalPref.MOST_PROX_AT_0, DistalPref.MOST_DIST_AT_1);*/ }