private JButton addButton(String name, Color color) {
JButton button = new JButton(name);
button.setBackground(color);
// button.setIcon(makeIcon(color, 50, 20));
button.setAction(setColorAction);
add(button);
return button;
}
@Override
public ButtonPanel createButtonPanel() {
ButtonPanel buttonPanel = new ButtonPanel();
JButton okButton = new JButton();
JButton cancelButton = new JButton();
JButton helpButton = new JButton();
okButton.setName(OK);
cancelButton.setName(CANCEL);
helpButton.setName(HELP);
buttonPanel.addButton(okButton, ButtonPanel.AFFIRMATIVE_BUTTON);
buttonPanel.addButton(cancelButton, ButtonPanel.CANCEL_BUTTON);
buttonPanel.addButton(helpButton, ButtonPanel.HELP_BUTTON);
okButton.setAction(
new AbstractAction(UIDefaultsLookup.getString("OptionPane.okButtonText")) {
public void actionPerformed(ActionEvent e) {
setDialogResult(RESULT_AFFIRMED);
setVisible(false);
dispose();
}
});
cancelButton.setAction(
new AbstractAction(UIDefaultsLookup.getString("OptionPane.cancelButtonText")) {
public void actionPerformed(ActionEvent e) {
setDialogResult(RESULT_CANCELLED);
setVisible(false);
dispose();
}
});
final ResourceBundle resourceBundle = ButtonResources.getResourceBundle(Locale.getDefault());
helpButton.setAction(
new AbstractAction(resourceBundle.getString("Button.help")) {
public void actionPerformed(ActionEvent e) {
// do something
}
});
helpButton.setMnemonic(resourceBundle.getString("Button.help.mnemonic").charAt(0));
setDefaultCancelAction(cancelButton.getAction());
setDefaultAction(okButton.getAction());
getRootPane().setDefaultButton(okButton);
buttonPanel.setBorder(BorderFactory.createEmptyBorder(10, 10, 10, 10));
return buttonPanel;
}
public JButton createButton(Action a) {
JButton b =
new JButton() {
public Dimension getMaximumSize() {
int width = Short.MAX_VALUE;
int height = super.getMaximumSize().height;
return new Dimension(width, height);
}
};
// setting the following client property informs the button to show
// the action text as it's name. The default is to not show the
// action text.
b.putClientProperty("displayActionText", Boolean.TRUE);
b.setAction(a);
// b.setAlignmentX(JButton.CENTER_ALIGNMENT);
return b;
}
private static JButton createButton(String accessibleName, Icon icon, Action action) {
JButton button =
new JButton() {
boolean mouseOverButton = false;
{
enableEvents(AWTEvent.MOUSE_EVENT_MASK);
addMouseListener(
new MouseAdapter() {
@Override
public void mouseEntered(MouseEvent e) {
mouseOverButton = true;
repaint();
}
@Override
public void mouseExited(MouseEvent e) {
mouseOverButton = false;
repaint();
}
});
}
@Override
protected void paintComponent(Graphics g) {
final Window window = SwingUtilities.windowForComponent(this);
float alpha = window.isActive() && mouseOverButton ? 1f : 0.5f;
final GraphicsConfig config = GraphicsUtil.paintWithAlpha(g, alpha);
getIcon().paintIcon(this, g, 0, 0);
config.restore();
}
};
button.setFocusPainted(false);
button.setFocusable(false);
button.setOpaque(false);
button.putClientProperty("paintActive", Boolean.TRUE);
button.putClientProperty(AccessibleContext.ACCESSIBLE_NAME_PROPERTY, accessibleName);
button.setBorder(JBUI.Borders.empty());
button.setText(null);
button.setAction(action);
button.setIcon(icon);
return button;
}
private void updateToggleButton(Action action, Icon icon) {
myToggleButton.setAction(action);
myToggleButton.setIcon(icon);
myToggleButton.setText(null);
}
/** make menu bar a separate component */
private void buildMenuToolBar() {
// get property manager
PrideInspectorContext context = (PrideInspectorContext) getDesktopContext();
// create all the actions
// file open action
Icon openFileIcon = GUIUtilities.loadIcon(context.getProperty("open.file.icon.small"));
String openFileDesc = context.getProperty("open.file.title");
String openFileTooltip = context.getProperty("open.file.tooltip");
PrideAction openFileAction = new OpenFileAction(openFileDesc, openFileIcon);
// database open action
Icon openDbIcon = GUIUtilities.loadIcon(context.getProperty("open.database.icon.small"));
String openDbDesc = context.getProperty("open.database.title");
String openDbTooltip = context.getProperty("open.database.tooltip");
PrideAction openDbAction = new OpenDatabaseAction(openDbDesc, openDbIcon);
// open reviewer
Icon openReviewerIcon =
GUIUtilities.loadIcon(context.getProperty("reviewer.download.icon.small"));
String openReviewerDesc = context.getProperty("reviewer.download.title");
String openReviewerTooltip = context.getProperty("reviewer.download.tooltip");
PrideAction openReviewerAction = new OpenReviewAction(openReviewerDesc, openReviewerIcon);
// close
String closeDesc = context.getProperty("close.source.title");
String closeAllDesc = context.getProperty("close.all.soruce.title");
PrideAction closeAction = new CloseControllerAction(closeDesc, null);
PrideAction closeAllAction = new CloseAllControllersAction(closeAllDesc, null);
context.addPropertyChangeListenerToDataAccessMonitor((PropertyChangeListener) closeAction);
context.addPropertyChangeListenerToDataAccessMonitor((PropertyChangeListener) closeAllAction);
// try pride xml sample
String openPrideXmlExampleDesc = context.getProperty("open.pride.xml.example.title");
File prideXmlExampleFile =
getExampleFiles(context.getProperty("pride.inspector.pride.example.file"));
java.util.List<File> prideXmlFiles = new ArrayList<File>();
if (prideXmlExampleFile != null) {
prideXmlFiles.add(prideXmlExampleFile);
}
PrideAction openPrideXmlExampleAction =
new OpenFileAction(openPrideXmlExampleDesc, null, prideXmlFiles);
openPrideXmlExampleAction.setEnabled(
prideXmlExampleFile != null && prideXmlExampleFile.exists());
// try mzml sample
String openMzMLExampleDesc = context.getProperty("open.mzml.example.title");
File mzMLExampleFile =
getExampleFiles(context.getProperty("pride.inspector.mzml.example.file"));
java.util.List<File> mzMLFiles = new ArrayList<File>();
if (mzMLExampleFile != null) {
mzMLFiles.add(mzMLExampleFile);
}
PrideAction openMzMLExampleAction = new OpenFileAction(openMzMLExampleDesc, null, mzMLFiles);
openMzMLExampleAction.setEnabled(mzMLExampleFile != null && mzMLExampleFile.exists());
// help
Icon helpIcon = GUIUtilities.loadIcon(context.getProperty("help.icon.small"));
String helpDesc = context.getProperty("help.title");
String helpTooltip = context.getProperty("help.tooltip");
PrideAction helpAction = new OpenHelpAction(helpDesc, helpIcon);
// faq
String faqDesc = context.getProperty("faq.title");
PrideAction faqAction = new OpenFAQAction(faqDesc, null);
// pride website
String prideWeb = context.getProperty("open.pride.website.title");
String prideWebUrl = context.getProperty("pride.website");
PrideAction prideWebAction = new OpenUrlAction(prideWeb, null, prideWebUrl);
// pride website
String inspectorWeb = context.getProperty("open.pride.inspector.website.title");
String inspectorWebUrl = context.getProperty("pride.inspector.website");
PrideAction inspectorWebAction = new OpenUrlAction(inspectorWeb, null, inspectorWebUrl);
// feedback
String feedbackDesc = context.getProperty("feedback.title");
PrideAction feedBackAction = new FeedbackAction(feedbackDesc, null);
// export
String exportDesc = context.getProperty("export.title");
PrideAction exportAction = new ExportSpectrumAction(exportDesc, null);
context.addPropertyChangeListenerToDataAccessMonitor((PropertyChangeListener) exportAction);
// export identification
String exportIdentDesc = context.getProperty("export.identification.title");
PrideAction exportIdentAction = new ExportIdentificationPeptideAction(exportIdentDesc, null);
// export spectrum description
String exportSpectrumDesc = context.getProperty("export.spectrum.desc.title");
PrideAction exportSpectrumDescAction = new ExportSpectrumDescAction(exportSpectrumDesc, null);
// export identification description
String exportIdentDescTitle = context.getProperty("export.identification.desc.title");
PrideAction exportIdentDescAction =
new ExportIdentificationDescAction(exportIdentDescTitle, null);
// export peptide description
String exportPeptideDescTitle = context.getProperty("export.peptide.desc.title");
PrideAction exportPeptideAction = new ExportPeptideDescAction(exportPeptideDescTitle, null);
// make experiment public
String makeExpPublicTitle = context.getProperty("make.experiment.public.title");
PrideAction makeExpPublicAction = new MakeExperimentPublicAction(makeExpPublicTitle, null);
String createReviewerTitle = context.getProperty("create.reviewer.title");
PrideAction createReviewerAction = new CreateReviewerAction(createReviewerTitle, null);
// check update
String updateDescTitle = context.getProperty("check.update.desc.title");
PrideAction updateAction = new UpdateAction(updateDescTitle, null);
// about
String aboutDesc = context.getProperty("about.title");
PrideAction aboutAction = new AboutAction(aboutDesc, null);
// exit
String exitDesc = context.getProperty("exit.title");
PrideAction exitAction = new ExitAction(exitDesc, null);
// menu items
menuBar = new JMenuBar();
// file menu
JMenu fileMenu =
MenuFactory.createMenu(
"File",
openFileAction,
openDbAction,
openReviewerAction,
MenuFactory.ACTION_SEPARATOR,
closeAction,
closeAllAction,
MenuFactory.ACTION_SEPARATOR,
exitAction);
fileMenu.setMnemonic(java.awt.event.KeyEvent.VK_F);
menuBar.add(fileMenu);
// try samples
JMenu trySampleMenu =
MenuFactory.createMenu("Examples", openPrideXmlExampleAction, openMzMLExampleAction);
trySampleMenu.setMnemonic(java.awt.event.KeyEvent.VK_X);
menuBar.add(trySampleMenu);
// export menu
JMenu exportMenu =
MenuFactory.createMenu(
"Export",
exportAction,
exportSpectrumDescAction,
exportIdentAction,
exportIdentDescAction,
exportPeptideAction);
exportMenu.setMnemonic(java.awt.event.KeyEvent.VK_E);
menuBar.add(exportMenu);
// curation menu
boolean showCurationMenu = Boolean.parseBoolean(context.getProperty("include.curation.menu"));
if (showCurationMenu) {
JMenu curationMenu =
MenuFactory.createMenu("Curation", makeExpPublicAction, createReviewerAction);
curationMenu.setMnemonic(java.awt.event.KeyEvent.VK_C);
menuBar.add(curationMenu);
}
// help menu
JMenu helpMenu =
MenuFactory.createMenu(
"Help",
helpAction,
faqAction,
MenuFactory.ACTION_SEPARATOR,
prideWebAction,
inspectorWebAction,
MenuFactory.ACTION_SEPARATOR,
feedBackAction,
MenuFactory.ACTION_SEPARATOR,
updateAction,
aboutAction);
helpMenu.setMnemonic(java.awt.event.KeyEvent.VK_H);
menuBar.add(helpMenu);
// add menus
mainFrame.setJMenuBar(menuBar);
// tool bar
toolBar = new JToolBar();
// open file
JButton openFileButton = new JButton();
openFileButton.setAction(openFileAction);
openFileButton.setText("");
openFileButton.setToolTipText(openFileTooltip);
openFileButton.setFocusable(false);
toolBar.add(openFileButton);
// open database
JButton openDbButton = new JButton();
openDbButton.setAction(openDbAction);
openDbButton.setText("");
openDbButton.setToolTipText(openDbTooltip);
openDbButton.setFocusable(false);
toolBar.add(openDbButton);
// open reviewer download
JButton openReviewerButton = new JButton();
openReviewerButton.setAction(openReviewerAction);
openReviewerButton.setText("");
openReviewerButton.setToolTipText(openReviewerTooltip);
openReviewerButton.setFocusable(false);
toolBar.add(openReviewerButton);
// separator
toolBar.addSeparator();
// help
JButton helpButton = new JButton(helpIcon);
helpButton.setAction(helpAction);
helpButton.setText("");
helpButton.setToolTipText(helpTooltip);
helpButton.setFocusable(false);
toolBar.add(helpButton);
mainFrame.getContentPane().add(toolBar, BorderLayout.PAGE_START);
}
private void setupActions() {
wordList.addListSelectionListener(
new ListSelectionListener() {
public void valueChanged(ListSelectionEvent e) {
wordEditField.setText((String) wordList.getSelectedValue());
wordEditField.selectAll();
new FocusRequester(wordEditField);
}
});
newWord.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
newWordAction();
}
});
wordEditFieldListener =
new ActionListener() {
public void actionPerformed(ActionEvent e) {
int index = wordList.getSelectedIndex();
String old = (String) wordList.getSelectedValue(), newVal = wordEditField.getText();
if (newVal.equals("") || newVal.equals(old)) {
return; // Empty string or no change.
}
if (wordListModel.contains(newVal)) {
// ensure that word already in list is visible
index = wordListModel.indexOf(newVal);
wordList.ensureIndexIsVisible(index);
return;
}
int newIndex = findPos(wordListModel, newVal);
if (index >= 0) {
// initiate replacement of selected word
wordListModel.remove(index);
if (newIndex > index) {
// newIndex has to be adjusted after removal of previous entry
newIndex--;
}
}
wordListModel.add(newIndex, newVal);
wordList.ensureIndexIsVisible(newIndex);
wordEditField.selectAll();
}
};
wordEditField.addActionListener(wordEditFieldListener);
removeWord.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
int index = wordList.getSelectedIndex();
if (index == -1) return;
wordListModel.remove(index);
wordEditField.setText("");
if (wordListModel.size() > 0)
wordList.setSelectedIndex(Math.min(index, wordListModel.size() - 1));
}
});
fieldList.addListSelectionListener(
new ListSelectionListener() {
public void valueChanged(ListSelectionEvent e) {
currentField = (String) fieldList.getSelectedValue();
fieldNameField.setText("");
setupWordSelector();
}
});
newField.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
if (!fieldListModel.get(0).equals(FIELD_FIRST_LINE)) {
// only add <field name> once
fieldListModel.add(0, FIELD_FIRST_LINE);
}
fieldList.setSelectedIndex(0);
fPane.getVerticalScrollBar().setValue(0);
fieldNameField.setEnabled(true);
fieldNameField.setText(currentField);
fieldNameField.selectAll();
new FocusRequester(fieldNameField);
}
});
fieldNameField.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
fieldNameField.transferFocus();
}
});
fieldNameField.addFocusListener(
new FocusAdapter() {
/** Adds the text value to the list */
public void focusLost(FocusEvent e) {
String s = fieldNameField.getText();
fieldNameField.setText("");
fieldNameField.setEnabled(false);
if (!FIELD_FIRST_LINE.equals(s) && !"".equals(s)) {
// user has typed something
// remove "<first name>" from list
fieldListModel.remove(0);
int pos;
if (fieldListModel.contains(s)) {
// field already exists, scroll to that field (below)
pos = fieldListModel.indexOf(s);
} else {
// Add new field.
pos = findPos(fieldListModel, s);
fieldListModel.add(Math.max(0, pos), s);
}
fieldList.setSelectedIndex(pos);
fieldList.ensureIndexIsVisible(pos);
currentField = s;
setupWordSelector();
newWordAction();
// new FocusRequester(wordEditField);
}
}
});
removeField.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
int index = fieldList.getSelectedIndex();
if (index == -1) return;
String fieldName = (String) fieldListModel.get(index);
removedFields.add(fieldName);
fieldListModel.remove(index);
wordListModels.remove(fieldName);
fieldNameField.setText("");
if (fieldListModel.size() > 0)
fieldList.setSelectedIndex(Math.min(index, wordListModel.size() - 1));
}
});
help.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
frame.helpDiag.showPage(GUIGlobals.contentSelectorHelp);
}
});
ok.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
applyChanges();
dispose();
}
});
apply.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
// Store if an entry is currently being edited:
if (!wordEditField.getText().equals("")) {
wordEditFieldListener.actionPerformed(null);
}
applyChanges();
}
});
@SuppressWarnings("serial")
Action cancelAction =
new AbstractAction() {
public void actionPerformed(ActionEvent e) {
dispose();
}
};
cancelAction.putValue(Action.NAME, Globals.lang("Cancel"));
cancel.setAction(cancelAction);
}
