Esempio n. 1
0
 public boolean dialogItemChanged(GenericDialog gd, AWTEvent e) {
   iterations = (int) gd.getNextNumber();
   count = (int) gd.getNextNumber();
   boolean bb = Prefs.blackBackground;
   Prefs.blackBackground = gd.getNextBoolean();
   if (Prefs.blackBackground != bb) ThresholdAdjuster.update();
   Prefs.padEdges = gd.getNextBoolean();
   EDM.setOutputType(gd.getNextChoiceIndex());
   boolean isInvalid = gd.invalidNumber();
   if (iterations < 1) {
     iterations = 1;
     isInvalid = true;
   }
   if (iterations > MAX_ITERATIONS) {
     iterations = MAX_ITERATIONS;
     isInvalid = true;
   }
   if (count < 1) {
     count = 1;
     isInvalid = true;
   }
   if (count > 8) {
     count = 8;
     isInvalid = true;
   }
   if (isInvalid) return false;
   if (imp != null) {
     operation = gd.getNextChoice();
     arg = operation.toLowerCase();
   }
   return true;
 }
Esempio n. 2
0
 public boolean dialogItemChanged(GenericDialog gd, AWTEvent e) {
   angle = gd.getNextNumber();
   // only check for invalid input to "angle", don't care about gridLines
   if (gd.invalidNumber()) {
     if (gd.wasOKed()) IJ.error("Angle is invalid.");
     return false;
   }
   gridLines = (int) gd.getNextNumber();
   interpolationMethod = gd.getNextChoiceIndex();
   if (bitDepth == 8 || bitDepth == 24) fillWithBackground = gd.getNextBoolean();
   if (canEnlarge) enlarge = gd.getNextBoolean();
   return true;
 }
Esempio n. 3
0
  public boolean dialogItemChanged(GenericDialog gd, AWTEvent e) {
    int width = imp.getWidth();
    int height = imp.getHeight();
    type = gd.getNextChoice();
    areaPerPoint = gd.getNextNumber();
    color = gd.getNextChoice();
    randomOffset = gd.getNextBoolean();

    double minArea = (width * height) / 50000.0;
    if (type.equals(types[1]) && minArea < 144.0) minArea = 144.0;
    else if (minArea < 16) minArea = 16.0;
    if (areaPerPoint / (pixelWidth * pixelHeight) < minArea) {
      String err = "\"Area per Point\" too small";
      if (gd.wasOKed()) IJ.error("Grid", err);
      else IJ.showStatus(err);
      return true;
    }
    double tileSize = Math.sqrt(areaPerPoint);
    tileWidth = tileSize / pixelWidth;
    tileHeight = tileSize / pixelHeight;
    if (randomOffset) {
      xstart = (int) (random.nextDouble() * tileWidth);
      ystart = (int) (random.nextDouble() * tileHeight);
    } else {
      xstart = (int) (tileWidth / 2.0 + 0.5);
      ystart = (int) (tileHeight / 2.0 + 0.5);
    }
    linesV = (int) ((width - xstart) / tileWidth) + 1;
    linesH = (int) ((height - ystart) / tileHeight) + 1;
    if (gd.invalidNumber()) return true;
    if (type.equals(types[0])) drawLines();
    else if (type.equals(types[1])) drawCrosses();
    else if (type.equals(types[2])) drawPoints();
    else showGrid(null);
    return true;
  }
  /** Displays a modal options dialog. */
  public boolean showDialog() {
    Calibration cal = imp != null ? imp.getCalibration() : (new Calibration());
    double unitSquared = cal.pixelWidth * cal.pixelHeight;
    if (pixelUnits) unitSquared = 1.0;
    if (Macro.getOptions() != null) {
      boolean oldMacro = updateMacroOptions();
      if (oldMacro) unitSquared = 1.0;
      staticMinSize = 0.0;
      staticMaxSize = DEFAULT_MAX_SIZE;
      staticMinCircularity = 0.0;
      staticMaxCircularity = 1.0;
      staticShowChoice = NOTHING;
    }
    GenericDialog gd = new GenericDialog("Analyze Particles");
    minSize = staticMinSize;
    maxSize = staticMaxSize;
    minCircularity = staticMinCircularity;
    maxCircularity = staticMaxCircularity;
    showChoice = staticShowChoice;
    if (maxSize == 999999) maxSize = DEFAULT_MAX_SIZE;
    options = staticOptions;
    String unit = cal.getUnit();
    boolean scaled = cal.scaled();
    if (unit.equals("inch")) {
      unit = "pixel";
      unitSquared = 1.0;
      scaled = false;
      pixelUnits = true;
    }
    String units = unit + "^2";
    int places = 0;
    double cmin = minSize * unitSquared;
    if ((int) cmin != cmin) places = 2;
    double cmax = maxSize * unitSquared;
    if ((int) cmax != cmax && cmax != DEFAULT_MAX_SIZE) places = 2;
    String minStr = ResultsTable.d2s(cmin, places);
    if (minStr.indexOf("-") != -1) {
      for (int i = places; i <= 6; i++) {
        minStr = ResultsTable.d2s(cmin, i);
        if (minStr.indexOf("-") == -1) break;
      }
    }
    String maxStr = ResultsTable.d2s(cmax, places);
    if (maxStr.indexOf("-") != -1) {
      for (int i = places; i <= 6; i++) {
        maxStr = ResultsTable.d2s(cmax, i);
        if (maxStr.indexOf("-") == -1) break;
      }
    }
    if (scaled) gd.setInsets(5, 0, 0);
    gd.addStringField("Size (" + units + "):", minStr + "-" + maxStr, 12);
    if (scaled) {
      gd.setInsets(0, 40, 5);
      gd.addCheckbox("Pixel units", pixelUnits);
    }
    gd.addStringField("Circularity:", IJ.d2s(minCircularity) + "-" + IJ.d2s(maxCircularity), 12);
    gd.addChoice("Show:", showStrings, showStrings[showChoice]);
    String[] labels = new String[8];
    boolean[] states = new boolean[8];
    labels[0] = "Display results";
    states[0] = (options & SHOW_RESULTS) != 0;
    labels[1] = "Exclude on edges";
    states[1] = (options & EXCLUDE_EDGE_PARTICLES) != 0;
    labels[2] = "Clear results";
    states[2] = (options & CLEAR_WORKSHEET) != 0;
    labels[3] = "Include holes";
    states[3] = (options & INCLUDE_HOLES) != 0;
    labels[4] = "Summarize";
    states[4] = (options & DISPLAY_SUMMARY) != 0;
    labels[5] = "Record starts";
    states[5] = (options & RECORD_STARTS) != 0;
    labels[6] = "Add to Manager";
    states[6] = (options & ADD_TO_MANAGER) != 0;
    labels[7] = "In_situ Show";
    states[7] = (options & IN_SITU_SHOW) != 0;
    gd.addCheckboxGroup(4, 2, labels, states);
    gd.addHelp(IJ.URL + "/docs/menus/analyze.html#ap");
    gd.showDialog();
    if (gd.wasCanceled()) return false;

    String size = gd.getNextString(); // min-max size
    if (scaled) pixelUnits = gd.getNextBoolean();
    if (pixelUnits) unitSquared = 1.0;
    else unitSquared = cal.pixelWidth * cal.pixelHeight;
    String[] minAndMax = Tools.split(size, " -");
    double mins = gd.parseDouble(minAndMax[0]);
    double maxs = minAndMax.length == 2 ? gd.parseDouble(minAndMax[1]) : Double.NaN;
    minSize = Double.isNaN(mins) ? DEFAULT_MIN_SIZE : mins / unitSquared;
    maxSize = Double.isNaN(maxs) ? DEFAULT_MAX_SIZE : maxs / unitSquared;
    if (minSize < DEFAULT_MIN_SIZE) minSize = DEFAULT_MIN_SIZE;
    if (maxSize < minSize) maxSize = DEFAULT_MAX_SIZE;
    staticMinSize = minSize;
    staticMaxSize = maxSize;

    minAndMax = Tools.split(gd.getNextString(), " -"); // min-max circularity
    double minc = gd.parseDouble(minAndMax[0]);
    double maxc = minAndMax.length == 2 ? gd.parseDouble(minAndMax[1]) : Double.NaN;
    minCircularity = Double.isNaN(minc) ? 0.0 : minc;
    maxCircularity = Double.isNaN(maxc) ? 1.0 : maxc;
    if (minCircularity < 0.0 || minCircularity > 1.0) minCircularity = 0.0;
    if (maxCircularity < minCircularity || maxCircularity > 1.0) maxCircularity = 1.0;
    if (minCircularity == 1.0 && maxCircularity == 1.0) minCircularity = 0.0;
    staticMinCircularity = minCircularity;
    staticMaxCircularity = maxCircularity;

    if (gd.invalidNumber()) {
      IJ.error("Bins invalid.");
      canceled = true;
      return false;
    }
    showChoice = gd.getNextChoiceIndex();
    staticShowChoice = showChoice;
    if (gd.getNextBoolean()) options |= SHOW_RESULTS;
    else options &= ~SHOW_RESULTS;
    if (gd.getNextBoolean()) options |= EXCLUDE_EDGE_PARTICLES;
    else options &= ~EXCLUDE_EDGE_PARTICLES;
    if (gd.getNextBoolean()) options |= CLEAR_WORKSHEET;
    else options &= ~CLEAR_WORKSHEET;
    if (gd.getNextBoolean()) options |= INCLUDE_HOLES;
    else options &= ~INCLUDE_HOLES;
    if (gd.getNextBoolean()) options |= DISPLAY_SUMMARY;
    else options &= ~DISPLAY_SUMMARY;
    if (gd.getNextBoolean()) options |= RECORD_STARTS;
    else options &= ~RECORD_STARTS;
    if (gd.getNextBoolean()) options |= ADD_TO_MANAGER;
    else options &= ~ADD_TO_MANAGER;
    if (gd.getNextBoolean()) options |= IN_SITU_SHOW;
    else options &= ~IN_SITU_SHOW;
    staticOptions = options;
    options |= SHOW_PROGRESS;
    if ((options & DISPLAY_SUMMARY) != 0)
      Analyzer.setMeasurements(Analyzer.getMeasurements() | AREA);
    return true;
  }
Esempio n. 5
0
  public boolean dialogItemChanged(GenericDialog gd, AWTEvent e) {
    if (IJ.isMacOSX()) IJ.wait(50);
    Calibration cal = imp.getCalibration();
    width = gd.getNextNumber();
    height = gd.getNextNumber();
    xRoi = gd.getNextNumber();
    yRoi = gd.getNextNumber();
    if (stackSize > 1) iSlice = (int) gd.getNextNumber();
    oval = gd.getNextBoolean();
    square = gd.getNextBoolean();
    centered = gd.getNextBoolean();
    if (cal.scaled()) scaledUnits = gd.getNextBoolean();
    if (gd.invalidNumber() || width <= 0 || height <= 0) return false;
    //
    Vector numFields = gd.getNumericFields();
    Vector checkboxes = gd.getCheckboxes();
    boolean newWidth = false, newHeight = false, newXY = false;
    if (e != null && e.getSource() == checkboxes.get(SQUARE) && square) {
      width = 0.5 * (width + height); // make square: same width&height
      height = width;
      newWidth = true;
      newHeight = true;
    }
    if (e != null && e.getSource() == checkboxes.get(CENTERED)) {
      double shiftBy = centered ? 0.5 : -0.5; // 'centered' changed:
      xRoi += shiftBy * width; // shift x, y to keep roi the same
      yRoi += shiftBy * height;
      newXY = true;
    }
    if (square && width != height && e != null) { // in 'square' mode, synchronize width&height
      if (e.getSource() == numFields.get(WIDTH)) {
        height = width;
        newHeight = true;
      } else if (e.getSource() == numFields.get(HEIGHT)) {
        width = height;
        newWidth = true;
      }
    }
    if (e != null && cal.scaled() && e.getSource() == checkboxes.get(SCALED_UNITS)) {
      double xFactor = scaledUnits ? cal.pixelWidth : 1. / cal.pixelWidth;
      double yFactor = scaledUnits ? cal.pixelHeight : 1. / cal.pixelHeight;
      width *= xFactor; // transform everything to keep roi the same
      height *= yFactor;
      xRoi *= xFactor;
      yRoi *= yFactor;
      newWidth = true;
      newHeight = true;
      newXY = true;
    }
    int digits = (scaledUnits || (int) width != width) ? 2 : 0;
    if (newWidth) ((TextField) (numFields.get(WIDTH))).setText(IJ.d2s(width, digits));
    if (newHeight) ((TextField) (numFields.get(HEIGHT))).setText(IJ.d2s(height, digits));
    digits = (scaledUnits || (int) xRoi != xRoi || (int) yRoi != yRoi) ? 2 : 0;
    if (newXY) {
      ((TextField) (numFields.get(X_ROI))).setText(IJ.d2s(xRoi, digits));
      ((TextField) (numFields.get(Y_ROI))).setText(IJ.d2s(yRoi, digits));
    }

    if (stackSize > 1 && iSlice > 0 && iSlice <= stackSize) imp.setSlice(iSlice);
    if (!newWidth && !newHeight && !newXY) // don't draw if an update will come immediately
    drawRoi();
    return true;
  }