Esempio n. 1
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 /** Sets the cursor based on the current tool and cursor location. */
 public void setCursor(int sx, int sy, int ox, int oy) {
   xMouse = ox;
   yMouse = oy;
   mouseExited = false;
   Roi roi = imp.getRoi();
   ImageWindow win = imp.getWindow();
   if (win == null) return;
   if (IJ.spaceBarDown()) {
     setCursor(handCursor);
     return;
   }
   int id = Toolbar.getToolId();
   switch (Toolbar.getToolId()) {
     case Toolbar.MAGNIFIER:
       setCursor(moveCursor);
       break;
     case Toolbar.HAND:
       setCursor(handCursor);
       break;
     default: // selection tool
       if (id == Toolbar.SPARE1 || id >= Toolbar.SPARE2) {
         if (Prefs.usePointerCursor) setCursor(defaultCursor);
         else setCursor(crosshairCursor);
       } else if (roi != null && roi.getState() != roi.CONSTRUCTING && roi.isHandle(sx, sy) >= 0)
         setCursor(handCursor);
       else if (Prefs.usePointerCursor
           || (roi != null && roi.getState() != roi.CONSTRUCTING && roi.contains(ox, oy)))
         setCursor(defaultCursor);
       else setCursor(crosshairCursor);
   }
 }
Esempio n. 2
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 public void mouseMoved(MouseEvent e) {
   // if (ij==null) return;
   int sx = e.getX();
   int sy = e.getY();
   int ox = offScreenX(sx);
   int oy = offScreenY(sy);
   flags = e.getModifiers();
   setCursor(sx, sy, ox, oy);
   IJ.setInputEvent(e);
   Roi roi = imp.getRoi();
   if (roi != null
       && (roi.getType() == Roi.POLYGON
           || roi.getType() == Roi.POLYLINE
           || roi.getType() == Roi.ANGLE)
       && roi.getState() == roi.CONSTRUCTING) {
     PolygonRoi pRoi = (PolygonRoi) roi;
     pRoi.handleMouseMove(ox, oy);
   } else {
     if (ox < imageWidth && oy < imageHeight) {
       ImageWindow win = imp.getWindow();
       // Cursor must move at least 12 pixels before text
       // displayed using IJ.showStatus() is overwritten.
       if ((sx - sx2) * (sx - sx2) + (sy - sy2) * (sy - sy2) > 144) showCursorStatus = true;
       if (win != null && showCursorStatus) win.mouseMoved(ox, oy);
     } else IJ.showStatus("");
   }
 }
Esempio n. 3
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  /*------------------------------------------------------------------*/
  void setupProgressBar() {
    int height = imp.getHeight();
    int width = imp.getWidth();

    completed = 0;
    lastTime = System.currentTimeMillis();
    switch (operation) {
      case GRADIENT_MAGNITUDE:
        processDuration = stackSize * (width + 2 * height);
        break;
      case GRADIENT_DIRECTION:
        processDuration = stackSize * (width + 2 * height);
        break;
      case LAPLACIAN:
        processDuration = stackSize * (width + 2 * height);
        break;
      case LARGEST_HESSIAN:
        processDuration = stackSize * (2 * width + 3 * height);
        break;
      case SMALLEST_HESSIAN:
        processDuration = stackSize * (2 * width + 3 * height);
        break;
      case HESSIAN_ORIENTATION:
        processDuration = stackSize * (2 * width + 3 * height);
        break;
      default:
        throw new IllegalArgumentException("Invalid operation");
    }
  } /* end setupProgressBar */
Esempio n. 4
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 boolean validDialogValues() {
   Calibration cal = imp.getCalibration();
   double pw = cal.pixelWidth, ph = cal.pixelHeight;
   if (width / pw < 1 || height / ph < 1) return false;
   if (xRoi / pw > imp.getWidth() || yRoi / ph > imp.getHeight()) return false;
   return true;
 }
Esempio n. 5
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 /**
  * Creates a dialog box, allowing the user to enter the requested width, height, x & y
  * coordinates, slice number for a Region Of Interest, option for oval, and option for whether x &
  * y coordinates to be centered.
  */
 void showDialog() {
   Calibration cal = imp.getCalibration();
   int digits = 0;
   if (scaledUnits && cal.scaled()) digits = 2;
   Roi roi = imp.getRoi();
   if (roi == null) drawRoi();
   GenericDialog gd = new GenericDialog("Specify");
   gd.addNumericField("Width:", width, digits);
   gd.addNumericField("Height:", height, digits);
   gd.addNumericField("X coordinate:", xRoi, digits);
   gd.addNumericField("Y coordinate:", yRoi, digits);
   if (stackSize > 1) gd.addNumericField("Slice:", iSlice, 0);
   gd.addCheckbox("Oval", oval);
   gd.addCheckbox("Constrain square/circle", square);
   gd.addCheckbox("Centered", centered);
   if (cal.scaled()) {
     boolean unitsMatch = cal.getXUnit().equals(cal.getYUnit());
     String units = unitsMatch ? cal.getUnits() : cal.getXUnit() + " x " + cal.getYUnit();
     gd.addCheckbox("Scaled units (" + units + ")", scaledUnits);
   }
   fields = gd.getNumericFields();
   gd.addDialogListener(this);
   gd.showDialog();
   if (gd.wasCanceled()) {
     if (roi == null) imp.deleteRoi();
     else // *ALWAYS* restore initial ROI when cancelled
     imp.setRoi(roi);
   }
 }
Esempio n. 6
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  /** Generate output image whose type is same as input image. */
  private ImagePlus makeOutputImage(ImagePlus imp, FloatProcessor fp, int ptype) {
    int width = imp.getWidth();
    int height = imp.getHeight();
    float[] pixels = (float[]) fp.getPixels();
    ImageProcessor oip = null;

    // Create output image consistent w/ type of input image.
    int size = pixels.length;
    switch (ptype) {
      case BYTE_TYPE:
        oip = imp.getProcessor().createProcessor(width, height);
        byte[] pixels8 = (byte[]) oip.getPixels();
        for (int i = 0; i < size; i++) pixels8[i] = (byte) pixels[i];
        break;
      case SHORT_TYPE:
        oip = imp.getProcessor().createProcessor(width, height);
        short[] pixels16 = (short[]) oip.getPixels();
        for (int i = 0; i < size; i++) pixels16[i] = (short) pixels[i];
        break;
      case FLOAT_TYPE:
        oip = new FloatProcessor(width, height, pixels, null);
        break;
    }

    // Adjust for display.
    // Calling this on non-ByteProcessors ensures image
    // processor is set up to correctly display image.
    oip.resetMinAndMax();

    // Create new image plus object. Don't use
    // ImagePlus.createImagePlus here because there may be
    // attributes of input image that are not appropriate for
    // projection.
    return new ImagePlus(makeTitle(), oip);
  }
Esempio n. 7
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 // Added by Marcel Boeglin 2013.09.22
 private Overlay projectHyperStackRois(Overlay overlay) {
   if (overlay == null) return null;
   int t1 = imp.getFrame();
   int channels = projImage.getNChannels();
   int slices = 1;
   int frames = projImage.getNFrames();
   Overlay overlay2 = new Overlay();
   Roi roi;
   int c, z, t;
   int size = channels * slices * frames;
   for (Roi r : overlay.toArray()) {
     c = r.getCPosition();
     z = r.getZPosition();
     t = r.getTPosition();
     roi = (Roi) r.clone();
     if (size == channels) { // current time frame
       if (z >= startSlice && z <= stopSlice && t == t1 || c == 0) {
         roi.setPosition(c);
         overlay2.add(roi);
       }
     } else if (size == frames * channels) { // all time frames
       if (z >= startSlice && z <= stopSlice) roi.setPosition(c, 1, t);
       else if (z == 0) roi.setPosition(c, 0, t);
       else continue;
       overlay2.add(roi);
     }
   }
   return overlay2;
 }
Esempio n. 8
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 /**
  * Adds a checkbox labelled "Preview" for "automatic" preview. The reference to this checkbox can
  * be retrieved by getPreviewCheckbox() and it provides the additional method previewRunning for
  * optical feedback while preview is prepared. PlugInFilters can have their "run" method
  * automatically called for preview under the following conditions: - the PlugInFilter must pass a
  * reference to itself (i.e., "this") as an argument to the AddPreviewCheckbox - it must implement
  * the DialogListener interface and set the filter parameters in the dialogItemChanged method. -
  * it must have DIALOG and PREVIEW set in its flags. A previewCheckbox is always off when the
  * filter is started and does not get recorded by the Macro Recorder.
  *
  * @param pfr A reference to the PlugInFilterRunner calling the PlugInFilter if automatic preview
  *     is desired, null otherwise.
  */
 public void addPreviewCheckbox(PlugInFilterRunner pfr) {
   if (previewCheckbox != null) return;
   ImagePlus imp = WindowManager.getCurrentImage();
   if (imp != null && imp.isComposite() && ((CompositeImage) imp).getMode() == IJ.COMPOSITE)
     return;
   this.pfr = pfr;
   addCheckbox(previewLabel, false, true);
 }
Esempio n. 9
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 /**
  * Zooms out by making the source rectangle (srcRect) larger and centering it on (x,y). If we
  * can't make it larger, then make the window smaller.
  */
 public void zoomOut(int x, int y) {
   if (magnification <= 0.03125) return;
   double oldMag = magnification;
   double newMag = getLowerZoomLevel(magnification);
   double srcRatio = (double) srcRect.width / srcRect.height;
   double imageRatio = (double) imageWidth / imageHeight;
   double initialMag = imp.getWindow().getInitialMagnification();
   if (Math.abs(srcRatio - imageRatio) > 0.05) {
     double scale = oldMag / newMag;
     int newSrcWidth = (int) Math.round(srcRect.width * scale);
     int newSrcHeight = (int) Math.round(srcRect.height * scale);
     if (newSrcWidth > imageWidth) newSrcWidth = imageWidth;
     if (newSrcHeight > imageHeight) newSrcHeight = imageHeight;
     int newSrcX = srcRect.x - (newSrcWidth - srcRect.width) / 2;
     int newSrcY = srcRect.y - (newSrcHeight - srcRect.height) / 2;
     if (newSrcX < 0) newSrcX = 0;
     if (newSrcY < 0) newSrcY = 0;
     srcRect = new Rectangle(newSrcX, newSrcY, newSrcWidth, newSrcHeight);
     // IJ.log(newMag+" "+srcRect+" "+dstWidth+" "+dstHeight);
     int newDstWidth = (int) (srcRect.width * newMag);
     int newDstHeight = (int) (srcRect.height * newMag);
     setMagnification(newMag);
     setMaxBounds();
     // IJ.log(newDstWidth+" "+dstWidth+" "+newDstHeight+" "+dstHeight);
     if (newDstWidth < dstWidth || newDstHeight < dstHeight) {
       // IJ.log("pack");
       setDrawingSize(newDstWidth, newDstHeight);
       imp.getWindow().pack();
     } else repaint();
     return;
   }
   if (imageWidth * newMag > dstWidth) {
     int w = (int) Math.round(dstWidth / newMag);
     if (w * newMag < dstWidth) w++;
     int h = (int) Math.round(dstHeight / newMag);
     if (h * newMag < dstHeight) h++;
     x = offScreenX(x);
     y = offScreenY(y);
     Rectangle r = new Rectangle(x - w / 2, y - h / 2, w, h);
     if (r.x < 0) r.x = 0;
     if (r.y < 0) r.y = 0;
     if (r.x + w > imageWidth) r.x = imageWidth - w;
     if (r.y + h > imageHeight) r.y = imageHeight - h;
     srcRect = r;
   } else {
     srcRect = new Rectangle(0, 0, imageWidth, imageHeight);
     setDrawingSize((int) (imageWidth * newMag), (int) (imageHeight * newMag));
     // setDrawingSize(dstWidth/2, dstHeight/2);
     imp.getWindow().pack();
   }
   // IJ.write(newMag + " " + srcRect.x+" "+srcRect.y+" "+srcRect.width+" "+srcRect.height+"
   // "+dstWidth + " " + dstHeight);
   setMagnification(newMag);
   // IJ.write(srcRect.x + " " + srcRect.width + " " + dstWidth);
   setMaxBounds();
   repaint();
 }
Esempio n. 10
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 /**
  * Builds dialog to query users for projection parameters.
  *
  * @param start starting slice to display
  * @param stop last slice
  */
 protected GenericDialog buildControlDialog(int start, int stop) {
   GenericDialog gd = new GenericDialog("ZProjection", IJ.getInstance());
   gd.addNumericField("Start slice:", startSlice, 0 /*digits*/);
   gd.addNumericField("Stop slice:", stopSlice, 0 /*digits*/);
   gd.addChoice("Projection type", METHODS, METHODS[method]);
   if (isHyperstack && imp.getNFrames() > 1 && imp.getNSlices() > 1)
     gd.addCheckbox("All time frames", allTimeFrames);
   return gd;
 }
Esempio n. 11
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 /** Sets the color used used for the ROI Manager "Show All" mode. */
 public static void setShowAllColor(Color c) {
   if (c == null) return;
   showAllColor = c;
   labelColor = null;
   ImagePlus img = WindowManager.getCurrentImage();
   if (img != null) {
     ImageCanvas ic = img.getCanvas();
     if (ic != null && ic.getShowAllROIs()) img.draw();
   }
 }
Esempio n. 12
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 void updateImage(ImagePlus imp) {
   this.imp = imp;
   int width = imp.getWidth();
   int height = imp.getHeight();
   imageWidth = width;
   imageHeight = height;
   srcRect = new Rectangle(0, 0, imageWidth, imageHeight);
   setDrawingSize(imageWidth, (int) imageHeight);
   magnification = 1.0;
 }
Esempio n. 13
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 void addScrollbars(ImagePlus imp) {
   ImageStack s = imp.getStack();
   int stackSize = s.getSize();
   nSlices = stackSize;
   hyperStack = imp.getOpenAsHyperStack();
   // imp.setOpenAsHyperStack(false);
   int[] dim = imp.getDimensions();
   int nDimensions = 2 + (dim[2] > 1 ? 1 : 0) + (dim[3] > 1 ? 1 : 0) + (dim[4] > 1 ? 1 : 0);
   if (nDimensions <= 3 && dim[2] != nSlices) hyperStack = false;
   if (hyperStack) {
     nChannels = dim[2];
     nSlices = dim[3];
     nFrames = dim[4];
   }
   // IJ.log("StackWindow: "+hyperStack+" "+nChannels+" "+nSlices+" "+nFrames);
   if (nSlices == stackSize) hyperStack = false;
   if (nChannels * nSlices * nFrames != stackSize) hyperStack = false;
   if (cSelector != null || zSelector != null || tSelector != null) removeScrollbars();
   ImageJ ij = IJ.getInstance();
   if (nChannels > 1) {
     cSelector = new ScrollbarWithLabel(this, 1, 1, 1, nChannels + 1, 'c');
     add(cSelector);
     if (ij != null) cSelector.addKeyListener(ij);
     cSelector.addAdjustmentListener(this);
     cSelector.setFocusable(false); // prevents scroll bar from blinking on Windows
     cSelector.setUnitIncrement(1);
     cSelector.setBlockIncrement(1);
   }
   if (nSlices > 1) {
     char label = nChannels > 1 || nFrames > 1 ? 'z' : 't';
     if (stackSize == dim[2] && imp.isComposite()) label = 'c';
     zSelector = new ScrollbarWithLabel(this, 1, 1, 1, nSlices + 1, label);
     if (label == 't') animationSelector = zSelector;
     add(zSelector);
     if (ij != null) zSelector.addKeyListener(ij);
     zSelector.addAdjustmentListener(this);
     zSelector.setFocusable(false);
     int blockIncrement = nSlices / 10;
     if (blockIncrement < 1) blockIncrement = 1;
     zSelector.setUnitIncrement(1);
     zSelector.setBlockIncrement(blockIncrement);
     sliceSelector = zSelector.bar;
   }
   if (nFrames > 1) {
     animationSelector = tSelector = new ScrollbarWithLabel(this, 1, 1, 1, nFrames + 1, 't');
     add(tSelector);
     if (ij != null) tSelector.addKeyListener(ij);
     tSelector.addAdjustmentListener(this);
     tSelector.setFocusable(false);
     int blockIncrement = nFrames / 10;
     if (blockIncrement < 1) blockIncrement = 1;
     tSelector.setUnitIncrement(1);
     tSelector.setBlockIncrement(blockIncrement);
   }
 }
Esempio n. 14
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  /** Performs actual projection using specified method. */
  public void doProjection() {
    if (imp == null) return;
    sliceCount = 0;
    if (method < AVG_METHOD || method > MEDIAN_METHOD) method = AVG_METHOD;
    for (int slice = startSlice; slice <= stopSlice; slice += increment) sliceCount++;
    if (method == MEDIAN_METHOD) {
      projImage = doMedianProjection();
      return;
    }

    // Create new float processor for projected pixels.
    FloatProcessor fp = new FloatProcessor(imp.getWidth(), imp.getHeight());
    ImageStack stack = imp.getStack();
    RayFunction rayFunc = getRayFunction(method, fp);
    if (IJ.debugMode == true) {
      IJ.log("\nProjecting stack from: " + startSlice + " to: " + stopSlice);
    }

    // Determine type of input image. Explicit determination of
    // processor type is required for subsequent pixel
    // manipulation.  This approach is more efficient than the
    // more general use of ImageProcessor's getPixelValue and
    // putPixel methods.
    int ptype;
    if (stack.getProcessor(1) instanceof ByteProcessor) ptype = BYTE_TYPE;
    else if (stack.getProcessor(1) instanceof ShortProcessor) ptype = SHORT_TYPE;
    else if (stack.getProcessor(1) instanceof FloatProcessor) ptype = FLOAT_TYPE;
    else {
      IJ.error("Z Project", "Non-RGB stack required");
      return;
    }

    // Do the projection.
    for (int n = startSlice; n <= stopSlice; n += increment) {
      IJ.showStatus("ZProjection " + color + ": " + n + "/" + stopSlice);
      IJ.showProgress(n - startSlice, stopSlice - startSlice);
      projectSlice(stack.getPixels(n), rayFunc, ptype);
    }

    // Finish up projection.
    if (method == SUM_METHOD) {
      fp.resetMinAndMax();
      projImage = new ImagePlus(makeTitle(), fp);
    } else if (method == SD_METHOD) {
      rayFunc.postProcess();
      fp.resetMinAndMax();
      projImage = new ImagePlus(makeTitle(), fp);
    } else {
      rayFunc.postProcess();
      projImage = makeOutputImage(imp, fp, ptype);
    }

    if (projImage == null) IJ.error("Z Project", "Error computing projection.");
  }
Esempio n. 15
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 private boolean ignoreArrowKeys(ImagePlus imp) {
   Frame frame = WindowManager.getFrontWindow();
   String title = frame.getTitle();
   if (title != null && title.equals("ROI Manager")) return true;
   // Control Panel?
   if (frame != null && frame instanceof javax.swing.JFrame) return true;
   ImageWindow win = imp.getWindow();
   // LOCI Data Browser window?
   if (imp.getStackSize() > 1 && win != null && win.getClass().getName().startsWith("loci"))
     return true;
   return false;
 }
Esempio n. 16
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 /** Implements the Image/Zoom/Original Scale command. */
 public void unzoom() {
   double imag = imp.getWindow().getInitialMagnification();
   if (magnification == imag) return;
   srcRect = new Rectangle(0, 0, imageWidth, imageHeight);
   ImageWindow win = imp.getWindow();
   setDrawingSize((int) (imageWidth * imag), (int) (imageHeight * imag));
   setMagnification(imag);
   setMaxBounds();
   win.pack();
   setMaxBounds();
   repaint();
 }
Esempio n. 17
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 public ImageCanvas(ImagePlus imp) {
   this.imp = imp;
   ij = IJ.getInstance();
   int width = imp.getWidth();
   int height = imp.getHeight();
   imageWidth = width;
   imageHeight = height;
   srcRect = new Rectangle(0, 0, imageWidth, imageHeight);
   setDrawingSize(imageWidth, (int) (imageHeight));
   magnification = 1.0;
   addMouseListener(this);
   addMouseMotionListener(this);
   addKeyListener(ij); // ImageJ handles keyboard shortcuts
   setFocusTraversalKeysEnabled(false);
 }
Esempio n. 18
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 public void mouseExited(MouseEvent e) {
   // autoScroll(e);
   ImageWindow win = imp.getWindow();
   if (win != null) setCursor(defaultCursor);
   IJ.showStatus("");
   mouseExited = true;
 }
Esempio n. 19
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 void resetMaxBounds() {
   ImageWindow win = imp.getWindow();
   if (win != null && (System.currentTimeMillis() - win.setMaxBoundsTime) > 500L) {
     win.setMaximizedBounds(win.maxWindowBounds);
     maxBoundsReset = true;
   }
 }
Esempio n. 20
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 /** Enlarge the canvas if the user enlarges the window. */
 void resizeCanvas(int width, int height) {
   ImageWindow win = imp.getWindow();
   // IJ.log("resizeCanvas: "+srcRect+" "+imageWidth+"  "+imageHeight+" "+width+"  "+height+"
   // "+dstWidth+"  "+dstHeight+" "+win.maxBounds);
   if (!maxBoundsReset
       && (width > dstWidth || height > dstHeight)
       && win != null
       && win.maxBounds != null
       && width != win.maxBounds.width - 10) {
     if (resetMaxBoundsCount != 0)
       resetMaxBounds(); // Works around problem that prevented window from being larger than
                         // maximized size
     resetMaxBoundsCount++;
   }
   if (IJ.altKeyDown()) {
     fitToWindow();
     return;
   }
   if (srcRect.width < imageWidth || srcRect.height < imageHeight) {
     if (width > imageWidth * magnification) width = (int) (imageWidth * magnification);
     if (height > imageHeight * magnification) height = (int) (imageHeight * magnification);
     setDrawingSize(width, height);
     srcRect.width = (int) (dstWidth / magnification);
     srcRect.height = (int) (dstHeight / magnification);
     if ((srcRect.x + srcRect.width) > imageWidth) srcRect.x = imageWidth - srcRect.width;
     if ((srcRect.y + srcRect.height) > imageHeight) srcRect.y = imageHeight - srcRect.height;
     repaint();
   }
   // IJ.log("resizeCanvas2: "+srcRect+" "+dstWidth+"  "+dstHeight+" "+width+"  "+height);
 }
Esempio n. 21
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 protected void handleRoiMouseDown(MouseEvent e) {
   int sx = e.getX();
   int sy = e.getY();
   int ox = offScreenX(sx);
   int oy = offScreenY(sy);
   Roi roi = imp.getRoi();
   int handle = roi != null ? roi.isHandle(sx, sy) : -1;
   boolean multiPointMode =
       roi != null
           && (roi instanceof PointRoi)
           && handle == -1
           && Toolbar.getToolId() == Toolbar.POINT
           && Toolbar.getMultiPointMode();
   if (multiPointMode) {
     imp.setRoi(((PointRoi) roi).addPoint(ox, oy));
     return;
   }
   setRoiModState(e, roi, handle);
   if (roi != null) {
     if (handle >= 0) {
       roi.mouseDownInHandle(handle, sx, sy);
       return;
     }
     Rectangle r = roi.getBounds();
     int type = roi.getType();
     if (type == Roi.RECTANGLE
         && r.width == imp.getWidth()
         && r.height == imp.getHeight()
         && roi.getPasteMode() == Roi.NOT_PASTING
         && !(roi instanceof ImageRoi)) {
       imp.killRoi();
       return;
     }
     if (roi.contains(ox, oy)) {
       if (roi.modState == Roi.NO_MODS) roi.handleMouseDown(sx, sy);
       else {
         imp.killRoi();
         imp.createNewRoi(sx, sy);
       }
       return;
     }
     if ((type == Roi.POLYGON || type == Roi.POLYLINE || type == Roi.ANGLE)
         && roi.getState() == roi.CONSTRUCTING) return;
     int tool = Toolbar.getToolId();
     if ((tool == Toolbar.POLYGON || tool == Toolbar.POLYLINE || tool == Toolbar.ANGLE)
         && !(IJ.shiftKeyDown() || IJ.altKeyDown())) {
       imp.killRoi();
       return;
     }
   }
   imp.createNewRoi(sx, sy);
 }
Esempio n. 22
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 private void doHSRGBProjection(ImagePlus rgbImp) {
   ImageStack stack = rgbImp.getStack();
   ImageStack stack2 = new ImageStack(stack.getWidth(), stack.getHeight());
   for (int i = startSlice; i <= stopSlice; i++) stack2.addSlice(null, stack.getProcessor(i));
   startSlice = 1;
   stopSlice = stack2.getSize();
   doRGBProjection(stack2);
 }
Esempio n. 23
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 public StackWindow(ImagePlus imp, ImageCanvas ic) {
   super(imp, ic);
   addScrollbars(imp);
   addMouseWheelListener(this);
   if (sliceSelector == null && this.getClass().getName().indexOf("Image5D") != -1)
     sliceSelector = new Scrollbar(); // prevents Image5D from crashing
   // IJ.log(nChannels+" "+nSlices+" "+nFrames);
   pack();
   ic = imp.getCanvas();
   if (ic != null) ic.setMaxBounds();
   show();
   int previousSlice = imp.getCurrentSlice();
   if (previousSlice > 1 && previousSlice <= imp.getStackSize()) imp.setSlice(previousSlice);
   else imp.setSlice(1);
   thread = new Thread(this, "zSelector");
   thread.start();
 }
Esempio n. 24
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 public void run(String arg) {
   imp = IJ.getImage();
   Roi roi = imp.getRoi();
   if (roi != null && !roi.isArea()) imp.killRoi(); // ignore any line selection
   ImageProcessor ip = imp.getProcessor();
   if (!showDialog(ip)) return;
   if (ip.getWidth() > 1 && ip.getHeight() > 1) ip.setInterpolate(interpolate);
   else ip.setInterpolate(false);
   ip.setBackgroundValue(bgValue);
   imp.startTiming();
   try {
     if (newWindow && imp.getStackSize() > 1 && processStack) createNewStack(imp, ip);
     else scale(ip);
   } catch (OutOfMemoryError o) {
     IJ.outOfMemory("Scale");
   }
   IJ.showProgress(1.0);
 }
Esempio n. 25
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 void setMaxBounds() {
   if (maxBoundsReset) {
     maxBoundsReset = false;
     ImageWindow win = imp.getWindow();
     if (win != null && !IJ.isLinux() && win.maxBounds != null) {
       win.setMaximizedBounds(win.maxBounds);
       win.setMaxBoundsTime = System.currentTimeMillis();
     }
   }
 }
Esempio n. 26
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 public void run(String arg) {
   ImagePlus imp = WindowManager.getImage(id);
   if (imp != null && imp.getWindow() != null) {
     imp.getWindow().toFront();
     return;
   }
   int colorWidth = 22;
   int colorHeight = 16;
   int columns = 5;
   int rows = 20;
   int width = columns * colorWidth;
   int height = rows * colorHeight;
   ColorGenerator cg = new ColorGenerator(width, height, new int[width * height], this);
   cg.drawColors(colorWidth, colorHeight, columns, rows);
   setProcessor("CP", cg);
   id = getID();
   show();
   IJ.register(ColorPicker.class);
 }
Esempio n. 27
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 // Use double buffer to reduce flicker when drawing complex ROIs.
 // Author: Erik Meijering
 void paintDoubleBuffered(Graphics g) {
   final int srcRectWidthMag = (int) (srcRect.width * magnification);
   final int srcRectHeightMag = (int) (srcRect.height * magnification);
   if (offScreenImage == null
       || offScreenWidth != srcRectWidthMag
       || offScreenHeight != srcRectHeightMag) {
     offScreenImage = createImage(srcRectWidthMag, srcRectHeightMag);
     offScreenWidth = srcRectWidthMag;
     offScreenHeight = srcRectHeightMag;
   }
   Roi roi = imp.getRoi();
   try {
     if (imageUpdated) {
       imageUpdated = false;
       imp.updateImage();
     }
     Graphics offScreenGraphics = offScreenImage.getGraphics();
     Java2.setBilinearInterpolation(offScreenGraphics, Prefs.interpolateScaledImages);
     Image img = imp.getImage();
     if (img != null)
       offScreenGraphics.drawImage(
           img,
           0,
           0,
           srcRectWidthMag,
           srcRectHeightMag,
           srcRect.x,
           srcRect.y,
           srcRect.x + srcRect.width,
           srcRect.y + srcRect.height,
           null);
     if (overlay != null) drawOverlay(offScreenGraphics);
     if (showAllROIs) drawAllROIs(offScreenGraphics);
     if (roi != null) drawRoi(roi, offScreenGraphics);
     if (srcRect.width < imageWidth || srcRect.height < imageHeight)
       drawZoomIndicator(offScreenGraphics);
     if (IJ.debugMode) showFrameRate(offScreenGraphics);
     g.drawImage(offScreenImage, 0, 0, null);
   } catch (OutOfMemoryError e) {
     IJ.outOfMemory("Paint");
   }
 }
Esempio n. 28
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 private boolean deleteOverlayRoi(ImagePlus imp) {
   if (imp == null) return false;
   Overlay overlay = null;
   ImageCanvas ic = imp.getCanvas();
   if (ic != null) overlay = ic.getShowAllList();
   if (overlay == null) overlay = imp.getOverlay();
   if (overlay == null) return false;
   Roi roi = imp.getRoi();
   for (int i = 0; i < overlay.size(); i++) {
     Roi roi2 = overlay.get(i);
     if (roi2 == roi) {
       overlay.remove(i);
       imp.deleteRoi();
       ic = imp.getCanvas();
       if (ic != null) ic.roiManagerSelect(roi, true);
       return true;
     }
   }
   return false;
 }
Esempio n. 29
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 public void refreshForeground() {
   // Boundary for Foreground Selection
   setColor(0x444444);
   drawRect(8, 266, (w * 2) + 4, (h * 2) + 4);
   setColor(0x999999);
   drawRect(9, 267, (w * 2) + 2, (h * 2) + 2);
   setRoi(10, 268, w * 2, h * 2); // Paints the Foreground Color
   setColor(Toolbar.getForegroundColor());
   fill();
   imp.updateAndDraw();
 }
Esempio n. 30
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 public void refreshBackground() {
   // Boundary for Background Selection
   setColor(0x444444);
   drawRect((w * 2) - 12, 276, (w * 2) + 4, (h * 2) + 4);
   setColor(0x999999);
   drawRect((w * 2) - 11, 277, (w * 2) + 2, (h * 2) + 2);
   setRoi((w * 2) - 10, 278, w * 2, h * 2); // Paints the Background Color
   setColor(Toolbar.getBackgroundColor());
   fill();
   imp.updateAndDraw();
 }