@Override
public boolean run(JEXEntry optionalEntry) {
if (imageData == null || !imageData.getTypeName().getType().equals(JEXData.IMAGE)) {
return false;
}
// Run the function
TreeMap<DimensionMap, String> images = ImageReader.readObjectToImagePathTable(imageData);
TreeMap<DimensionMap, String> outputMap = new TreeMap<DimensionMap, String>();
int count = 0;
int total = images.size();
for (DimensionMap dim : images.keySet()) {
if (this.isCanceled()) {
return false;
}
String path = images.get(dim);
// File f = new File(path);
// get the image
ImagePlus im = new ImagePlus(path);
ij.process.ImageProcessor imProc = im.getProcessor();
if (imProc == null) continue;
FloatProcessor imp =
(FloatProcessor) im.getProcessor().convertToFloat(); // should be a float processor
int newWidth = (int) (imp.getWidth() * scale);
imp.setInterpolationMethod(ImageProcessor.BILINEAR);
imp = (FloatProcessor) imp.resize(newWidth);
ImagePlus toSave = FunctionUtility.makeImageToSave(imp, "false", bitDepth);
String finalPath = JEXWriter.saveImage(toSave);
outputMap.put(dim.copy(), finalPath);
Logs.log("Finished processing " + count + " of " + total + ".", 1, this);
count++;
// Status bar
int percentage = (int) (100 * ((double) count / (double) images.size()));
JEXStatics.statusBar.setProgressPercentage(percentage);
}
// Set the outputs
output = ImageWriter.makeImageStackFromPaths("temp", outputMap);
output.setDataObjectInfo("Stack binned using binning function");
// Return status
return true;
}
