public GLMModelV3 make_model(int version, MakeGLMModelV3 args) {
GLMModel model = DKV.getGet(args.model.key());
if (model == null) throw new IllegalArgumentException("missing source model " + args.model);
String[] names = model._output.coefficientNames();
Map<String, Double> coefs = model.coefficients();
for (int i = 0; i < args.names.length; ++i) coefs.put(args.names[i], args.beta[i]);
double[] beta = model.beta().clone();
for (int i = 0; i < beta.length; ++i) beta[i] = coefs.get(names[i]);
GLMModel m =
new GLMModel(
args.dest != null ? args.dest.key() : Key.make(),
model._parms,
null,
new double[] {.5},
Double.NaN,
Double.NaN,
-1);
DataInfo dinfo = model.dinfo();
dinfo.setPredictorTransform(TransformType.NONE);
// GLMOutput(DataInfo dinfo, String[] column_names, String[][] domains, String[]
// coefficient_names, boolean binomial) {
m._output =
new GLMOutput(
model.dinfo(),
model._output._names,
model._output._domains,
model._output.coefficientNames(),
model._output._binomial,
beta);
DKV.put(m._key, m);
GLMModelV3 res = new GLMModelV3();
res.fillFromImpl(m);
return res;
}
public DataInfo(
Frame train,
Frame valid,
int nResponses,
boolean useAllFactorLevels,
TransformType predictor_transform,
TransformType response_transform,
boolean skipMissing,
boolean imputeMissing,
boolean missingBucket,
boolean weight,
boolean offset,
boolean fold) {
super(Key.<DataInfo>make());
_valid = false;
assert predictor_transform != null;
assert response_transform != null;
_offset = offset;
_weights = weight;
_fold = fold;
assert !(skipMissing && imputeMissing) : "skipMissing and imputeMissing cannot both be true";
_skipMissing = skipMissing;
_imputeMissing = imputeMissing;
_predictor_transform = predictor_transform;
_response_transform = response_transform;
_responses = nResponses;
_useAllFactorLevels = useAllFactorLevels;
_permutation = new int[train.numCols()];
final Vec[] tvecs = train.vecs();
// Count categorical-vs-numerical
final int n = tvecs.length - _responses - (offset ? 1 : 0) - (weight ? 1 : 0) - (fold ? 1 : 0);
int[] nums = MemoryManager.malloc4(n);
int[] cats = MemoryManager.malloc4(n);
int nnums = 0, ncats = 0;
for (int i = 0; i < n; ++i)
if (tvecs[i].isCategorical()) cats[ncats++] = i;
else nums[nnums++] = i;
_nums = nnums;
_cats = ncats;
_catLvls = new int[_cats][];
// sort the cats in the decreasing order according to their size
for (int i = 0; i < ncats; ++i)
for (int j = i + 1; j < ncats; ++j)
if (tvecs[cats[i]].domain().length < tvecs[cats[j]].domain().length) {
int x = cats[i];
cats[i] = cats[j];
cats[j] = x;
}
String[] names = new String[train.numCols()];
Vec[] tvecs2 = new Vec[train.numCols()];
// Compute the cardinality of each cat
_catModes = new int[_cats];
_catOffsets = MemoryManager.malloc4(ncats + 1);
_catMissing = new int[ncats];
int len = _catOffsets[0] = 0;
for (int i = 0; i < ncats; ++i) {
_catModes[i] = imputeCat(train.vec(cats[i]));
_permutation[i] = cats[i];
names[i] = train._names[cats[i]];
Vec v = (tvecs2[i] = tvecs[cats[i]]);
_catMissing[i] = missingBucket ? 1 : 0; // needed for test time
_catOffsets[i + 1] =
(len +=
v.domain().length
- (useAllFactorLevels ? 0 : 1)
+ (missingBucket ? 1 : 0)); // missing values turn into a new factor level
}
_numMeans = new double[_nums];
for (int i = 0; i < _nums; ++i) {
names[i + _cats] = train._names[nums[i]];
tvecs2[i + _cats] = train.vec(nums[i]);
_numMeans[i] = train.vec(nums[i]).mean();
_permutation[i + _cats] = nums[i];
}
for (int i = names.length - nResponses - (weight ? 1 : 0) - (offset ? 1 : 0) - (fold ? 1 : 0);
i < names.length;
++i) {
names[i] = train._names[i];
tvecs2[i] = train.vec(i);
}
_adaptedFrame = new Frame(names, tvecs2);
train.restructure(names, tvecs2);
if (valid != null) valid.restructure(names, valid.vecs(names));
// _adaptedFrame = train;
setPredictorTransform(predictor_transform);
if (_responses > 0) setResponseTransform(response_transform);
}
/**
* The train/valid Frame instances are sorted by categorical (themselves sorted by cardinality
* greatest to least) with all numerical columns following. The response column(s) are placed at
* the end.
*
* <p>Interactions: 1. Num-Num (Note: N(0,1) * N(0,1) ~ N(0,1) ) 2. Num-Enum 3. Enum-Enum
*
* <p>Interactions are produced on the fly and are dense (in all 3 cases). Consumers of DataInfo
* should not have to care how these interactions are generated. Any heuristic using the fullN
* value should continue functioning the same.
*
* <p>Interactions are specified in two ways: A. As a list of pairs of column indices. B. As a
* list of pairs of column indices with limited enums.
*/
public DataInfo(
Frame train,
Frame valid,
int nResponses,
boolean useAllFactorLevels,
TransformType predictor_transform,
TransformType response_transform,
boolean skipMissing,
boolean imputeMissing,
boolean missingBucket,
boolean weight,
boolean offset,
boolean fold,
Model.InteractionPair[] interactions) {
super(Key.<DataInfo>make());
_valid = valid != null;
assert predictor_transform != null;
assert response_transform != null;
_offset = offset;
_weights = weight;
_fold = fold;
assert !(skipMissing && imputeMissing) : "skipMissing and imputeMissing cannot both be true";
_skipMissing = skipMissing;
_imputeMissing = imputeMissing;
_predictor_transform = predictor_transform;
_response_transform = response_transform;
_responses = nResponses;
_useAllFactorLevels = useAllFactorLevels;
_interactions = interactions;
// create dummy InteractionWrappedVecs and shove them onto the front
if (_interactions != null) {
_interactionVecs = new int[_interactions.length];
train =
Model.makeInteractions(
train,
false,
_interactions,
_useAllFactorLevels,
_skipMissing,
predictor_transform == TransformType.STANDARDIZE)
.add(train);
if (valid != null)
valid =
Model.makeInteractions(
valid,
true,
_interactions,
_useAllFactorLevels,
_skipMissing,
predictor_transform == TransformType.STANDARDIZE)
.add(valid); // FIXME: should be using the training subs/muls!
}
_permutation = new int[train.numCols()];
final Vec[] tvecs = train.vecs();
// Count categorical-vs-numerical
final int n = tvecs.length - _responses - (offset ? 1 : 0) - (weight ? 1 : 0) - (fold ? 1 : 0);
int[] nums = MemoryManager.malloc4(n);
int[] cats = MemoryManager.malloc4(n);
int nnums = 0, ncats = 0;
for (int i = 0; i < n; ++i)
if (tvecs[i].isCategorical()) cats[ncats++] = i;
else nums[nnums++] = i;
_nums = nnums;
_cats = ncats;
_catLvls = new int[ncats][];
// sort the cats in the decreasing order according to their size
for (int i = 0; i < ncats; ++i)
for (int j = i + 1; j < ncats; ++j)
if (tvecs[cats[i]].domain().length < tvecs[cats[j]].domain().length) {
int x = cats[i];
cats[i] = cats[j];
cats[j] = x;
}
String[] names = new String[train.numCols()];
Vec[] tvecs2 = new Vec[train.numCols()];
// Compute the cardinality of each cat
_catModes = new int[ncats];
_catOffsets = MemoryManager.malloc4(ncats + 1);
_catMissing = new boolean[ncats];
int len = _catOffsets[0] = 0;
int interactionIdx = 0; // simple index into the _interactionVecs array
ArrayList<Integer> interactionIds;
if (_interactions == null) {
interactionIds = new ArrayList<>();
for (int i = 0; i < tvecs.length; ++i)
if (tvecs[i] instanceof InteractionWrappedVec) {
interactionIds.add(i);
}
_interactionVecs = new int[interactionIds.size()];
for (int i = 0; i < _interactionVecs.length; ++i) _interactionVecs[i] = interactionIds.get(i);
}
for (int i = 0; i < ncats; ++i) {
names[i] = train._names[cats[i]];
Vec v = (tvecs2[i] = tvecs[cats[i]]);
_catMissing[i] = missingBucket; // needed for test time
if (v instanceof InteractionWrappedVec) {
if (_interactions != null) _interactions[interactionIdx].vecIdx = i;
_interactionVecs[interactionIdx++] =
i; // i (and not cats[i]) because this is the index in _adaptedFrame
_catOffsets[i + 1] = (len += v.domain().length + (missingBucket ? 1 : 0));
} else
_catOffsets[i + 1] =
(len +=
v.domain().length
- (useAllFactorLevels ? 0 : 1)
+ (missingBucket ? 1 : 0)); // missing values turn into a new factor level
_catModes[i] =
imputeMissing ? imputeCat(train.vec(cats[i])) : _catMissing[i] ? v.domain().length : -100;
_permutation[i] = cats[i];
}
_numMeans = new double[nnums];
_numOffsets = MemoryManager.malloc4(nnums + 1);
_numOffsets[0] = len;
boolean isIWV; // is InteractionWrappedVec?
for (int i = 0; i < nnums; ++i) {
names[i + ncats] = train._names[nums[i]];
Vec v = train.vec(nums[i]);
tvecs2[i + ncats] = v;
isIWV = v instanceof InteractionWrappedVec;
if (isIWV) {
if (null != _interactions) _interactions[interactionIdx].vecIdx = i + ncats;
_interactionVecs[interactionIdx++] = i + ncats;
}
_numOffsets[i + 1] = (len += (isIWV ? ((InteractionWrappedVec) v).expandedLength() : 1));
_numMeans[i] = train.vec(nums[i]).mean();
_permutation[i + ncats] = nums[i];
}
for (int i = names.length - nResponses - (weight ? 1 : 0) - (offset ? 1 : 0) - (fold ? 1 : 0);
i < names.length;
++i) {
names[i] = train._names[i];
tvecs2[i] = train.vec(i);
}
_adaptedFrame = new Frame(names, tvecs2);
train.restructure(names, tvecs2);
if (valid != null) valid.restructure(names, valid.vecs(names));
// _adaptedFrame = train;
setPredictorTransform(predictor_transform);
if (_responses > 0) setResponseTransform(response_transform);
}