Esempio n. 1
0
  private void updateFields() {
    deLongNameValueLabel.setText(tempDE.getLongName());
    deIdValueLabel.setText(ConventionUtil.publicIdVersion(tempDE));
    if (tempDE.getContext() != null) deContextNameValueLabel.setText(tempDE.getContext().getName());
    else deContextNameValueLabel.setText("");

    if (tempDE.getValueDomain() != null)
      vdLongNameValueLabel.setText(tempDE.getValueDomain().getLongName());
    else vdLongNameValueLabel.setText("");

    if (prefs.getShowConceptCodeNameSummary()) {
      List<gov.nih.nci.ncicb.cadsr.domain.Concept> concepts =
          cadsrModule.getConcepts(tempDE.getDataElementConcept().getProperty());
      if (concepts != null && concepts.size() > 0) {
        StringBuffer conceptCodeSummary = new StringBuffer();
        StringBuffer conceptNameSummary = new StringBuffer();
        for (Concept con : concepts) {
          conceptCodeSummary.append(con.getPreferredName());
          conceptCodeSummary.append(" ");
          conceptNameSummary.append(con.getLongName());
          conceptNameSummary.append(" ");
        }
        conceptCodeSummaryValue.setText(conceptCodeSummary.toString());
        conceptNameSummaryValue.setText(conceptNameSummary.toString());
      }
    }
    enableCDELinks();
  }
  private DataElementConcept existingMapping(DataElementConcept dec) {

    List<String> eager = new ArrayList<String>();
    eager.add(EagerConstants.AC_CS_CSI);

    List<DataElementConcept> l = dataElementConceptDAO.find(dec, eager);

    if (l.size() == 0)
      throw new PersisterException(
          PropertyAccessor.getProperty("dec.existing.error", ConventionUtil.publicIdVersion(dec)));

    DataElementConcept existingDec = l.get(0);

    return existingDec;
  }
  public void persist() {
    DataElementConcept dec = DomainObjectFactory.newDataElementConcept();
    List<DataElementConcept> decs = elements.getElements(dec);
    logger.debug("***** Inside DEC Persist ");
    int count = 0;
    sendProgressEvent(count++, decs.size(), "DECs");

    logger.debug("decs... ");
    if (decs != null) {
      for (ListIterator<DataElementConcept> it = decs.listIterator(); it.hasNext(); ) {
        DataElementConcept newDec = DomainObjectFactory.newDataElementConcept();
        dec = it.next();

        sendProgressEvent(count++, decs.size(), "DEC : " + dec.getLongName());

        List<AlternateName> passedAltNames = new ArrayList<AlternateName>();
        for (AlternateName _an : dec.getAlternateNames()) passedAltNames.add(_an);

        List<Definition> modelDefinitions = new ArrayList<Definition>();
        for (Definition _def : dec.getDefinitions()) modelDefinitions.add(_def);

        List<AdminComponentClassSchemeClassSchemeItem> passedACCSCSI = dec.getAcCsCsis();

        dec.removeDefinitions();
        dec.removeAlternateNames();

        if (!StringUtil.isEmpty(dec.getPublicId()) && dec.getVersion() != null) {
          newDec = existingMapping(dec);
          dec.setId(newDec.getId());
          for (AlternateName _an : passedAltNames) {
            persisterUtil.addAlternateName(dec, _an);
          }
          it.set(newDec);
          persisterUtil.addPackageClassification(dec);
          logger.info(PropertyAccessor.getProperty("mapped.to.existing.dec"));
          continue;
        }

        // update object class with persisted one
        if (dec.getObjectClass().getPublicId() == null)
          dec.setObjectClass(LookupUtil.lookupObjectClass(dec.getObjectClass().getPreferredName()));
        else
          dec.setObjectClass(
              LookupUtil.lookupObjectClass(
                  dec.getObjectClass().getPublicId(), dec.getObjectClass().getVersion()));

        newDec.setObjectClass(dec.getObjectClass());

        // update property with persisted one
        if (dec.getProperty().getPublicId() == null)
          dec.setProperty(LookupUtil.lookupProperty(dec.getProperty().getPreferredName()));
        else
          dec.setProperty(
              LookupUtil.lookupProperty(
                  dec.getProperty().getPublicId(), dec.getProperty().getVersion()));

        newDec.setProperty(dec.getProperty());

        logger.debug("dec name: " + dec.getLongName());
        //        logger.debug("alt Name: " + ne);

        List<String> eager = new ArrayList<String>();
        eager.add("definitions");

        // does this dec exist?
        List l = dataElementConceptDAO.find(newDec, eager);
        logger.debug("***** decs size : " + l.size());
        if (l.size() == 0) {
          logger.debug("***** one or more decs ");
          if (dec.getConceptualDomain() == null)
            dec.setConceptualDomain(defaults.getConceptualDomain());
          dec.setContext(defaults.getContext());
          dec.setLongName(
              dec.getObjectClass().getLongName() + " " + dec.getProperty().getLongName());
          dec.setPreferredDefinition(
              dec.getObjectClass().getPreferredDefinition()
                  + DEC_PREFERRED_DEF_CONCAT_CHAR
                  + dec.getProperty().getPreferredDefinition());

          dec.setPreferredName(
              ConventionUtil.publicIdVersion(dec.getObjectClass())
                  + DEC_PREFERRED_NAME_CONCAT_CHAR
                  + ConventionUtil.publicIdVersion(dec.getProperty()));

          dec.setVersion(new Float(1.0f));
          dec.setWorkflowStatus(defaults.getWorkflowStatus());

          dec.setProperty(LookupUtil.lookupProperty(dec.getProperty().getPreferredName()));

          dec.setAudit(defaults.getAudit());
          dec.setLifecycle(defaults.getLifecycle());

          StringBuilder builder = new StringBuilder();
          for (char currentChar : dec.getPreferredDefinition().toCharArray()) {
            Character replacementChar = charReplacementMap.get(currentChar);
            builder.append(replacementChar != null ? replacementChar : currentChar);
          }
          dec.setPreferredDefinition(builder.toString());
          logger.debug(
              "***** preferred name " + dec.getPreferredName() + " public ID " + dec.getPublicId());
          newDec = dataElementConceptDAO.create(dec);
          logger.info(PropertyAccessor.getProperty("created.dec"));

        } else {
          newDec = (DataElementConcept) l.get(0);
          logger.info(PropertyAccessor.getProperty("existed.dec"));

          /* if DEC alreay exists, check context
           * If context is different, add Used_by alt_name
           */
          dec.setId(newDec.getId());

          if (!newDec.getContext().getId().equals(defaults.getContext().getId())) {
            AlternateName _an = DomainObjectFactory.newAlternateName();
            _an.setName(defaults.getContext().getName());
            _an.setType(AlternateName.TYPE_USED_BY);
            persisterUtil.addAlternateName(dec, _an);
          }
        }

        dec.setId(newDec.getId());
        for (AlternateName _an : passedAltNames) {
          persisterUtil.addAlternateName(dec, _an);
        }

        for (Definition def : modelDefinitions) {
          persisterUtil.addAlternateDefinition(dec, def);
        }

        LogUtil.logAc(newDec, logger);
        logger.info("-- Public ID: " + newDec.getPublicId());
        logger.info(
            PropertyAccessor.getProperty("oc.longName", newDec.getObjectClass().getLongName()));
        logger.info(
            PropertyAccessor.getProperty("prop.longName", newDec.getProperty().getLongName()));

        dec.setAcCsCsis(passedACCSCSI);
        persisterUtil.addPackageClassification(dec);
        it.set(newDec);

        // dec still referenced in DE. Need ID to retrieve it in DEPersister.
        dec.setId(newDec.getId());
      }
    }
    logger.debug("***** End DEC persist");
  }