/** Tests searching by gene id with case sensitivity enabled. */
@Test
public void searchGeneId() {
action.getSearchParameters().setSearchType(SearchType.GENE_ID);
action.getSearchParameters().setInputValues("1,2,3,4");
action.getSearchParameters().setCaseSensitiveSearch(true);
assertEquals(GENE_RESULT, action.search());
assertTrue(action.getGeneResults().size() > 0);
Db2DbParams expectedInput = new Db2DbParams();
expectedInput.setInputValues("1,2,3,4");
verify(bioDbNetRemoteService).db2db(refEq(expectedInput, ignoredParams));
}
/** Tests searching by gene pathways with case sensitivity disabled. */
@Test
public void searchPathwaysCaseInsensitive() {
action.getSearchParameters().setSearchType(SearchType.PATHWAY);
action.getSearchParameters().setInputValues(PATHWAY_NAME);
action.getSearchParameters().setCaseSensitiveSearch(false);
assertEquals(GENE_RESULT, action.search());
assertTrue(action.getGeneResults().size() > 0);
Db2DbParams expectedInput = new Db2DbParams();
expectedInput.setInputValues("H_BARD1PATHWAY,H_bard1Pathway,h_bard1Pathway,h_bard1pathway");
verify(bioDbNetRemoteService).db2db(refEq(expectedInput, ignoredParams));
}
/** Tests searching by gene alias with case sensitivity enabled. */
@Test
public void searchGeneSymbolCaseInsensitive() {
action.getSearchParameters().setSearchType(SearchType.GENE_SYMBOL);
action.getSearchParameters().setInputValues("BRCA1,BRCA2");
action.getSearchParameters().setCaseSensitiveSearch(false);
assertEquals(GENE_RESULT, action.search());
assertTrue(action.getGeneResults().size() > 0);
Db2DbParams expectedInput = new Db2DbParams();
expectedInput.setInputValues("BRCA1,BRCA2,brca1,brca2");
verify(bioDbNetRemoteService).db2db(refEq(expectedInput, ignoredParams));
}
/** Tests search of pathways by genes with case sensitivity disabled. */
@Test
public void searchPathwaysByGeneCaseInsensitive() {
action.getSearchParameters().setSearchType(SearchType.PATHWAY_BY_GENE);
action.getSearchParameters().setInputValues("BRCA1");
action.getSearchParameters().setCaseSensitiveSearch(false);
assertEquals(PATHWAY_RESULTS, action.search());
assertTrue(action.getGeneResults().isEmpty());
assertFalse(action.getPathwayResults().isEmpty());
assertEquals(5, action.getPathwayResults().size());
Db2DbParams expectedInput = new Db2DbParams();
expectedInput.setInputValues("BRCA1,brca1");
verify(bioDbNetRemoteService).db2db(refEq(expectedInput, ignoredParams));
}