public List<String> getNames() {
final List<String> names = Lists.newArrayList();
for (final TreeItem treeItem : getTreeItems()) {
names.add(treeItem.getName());
}
return names;
}
public void startUpload() {
final List<FileSource> fileSources = Lists.newArrayList();
for (final TreeItem treeItem : getTreeItems()) {
final FileSource fileSource = new FileSource(treeItem.getId(), treeItem.getName(), false);
fileSources.add(fileSource);
}
options.getCompletionCallback().onSuccess(fileSources);
}
public List<ScaffoldSample> getScaffoldSamples() {
final List<ScaffoldSample> samples = Lists.newArrayListWithCapacity(records.size());
for (final ListGridRecord record : records) {
final ScaffoldSample sample = new ScaffoldSample();
@SuppressWarnings("unchecked")
final Collection<TreeItem> selectionItems =
(Collection<TreeItem>) record.getAttributeAsObject("Selection");
final List<String> analysisIds = Lists.newArrayListWithCapacity(selectionItems.size());
for (final TreeItem treeItem : selectionItems) {
analysisIds.add(treeItem.getId());
}
final String sampleName = record.getAttributeAsString("Name");
final String categoryName = record.getAttributeAsString("Category");
final boolean analyzeAsMudpit = (Boolean) record.getAttributeAsBoolean("Mudpit");
sample.setIdentificationAnalysisIds(IdList.forIterable(analysisIds));
sample.setSampleName(sampleName);
sample.setAnalyzeAsMudpit(analyzeAsMudpit);
if (StringUtils.hasText(categoryName)) {
sample.setCategory(categoryName);
}
samples.add(sample);
}
return samples;
}