Esempio n. 1
0
    private static void loadPairs(
        HMapIV<ArrayListOfIntsWritable> pwsimMapping, int langID, JobConf job, Reporter reporter) {
      try {
        Path[] localFiles = DistributedCache.getLocalCacheFiles(job);
        String pwsimFile = job.get("PwsimPairs");
        for (Path localFile : localFiles) {
          if (localFile.toString().contains(getFilename(pwsimFile))) {
            SequenceFile.Reader reader =
                new SequenceFile.Reader(FileSystem.getLocal(job), localFile, job);

            PairOfInts key = (PairOfInts) reader.getKeyClass().newInstance();
            IntWritable value = (IntWritable) reader.getValueClass().newInstance();
            int cnt = 0;
            while (reader.next(key, value)) {
              int fDocno = key.getRightElement();
              int eDocno = key.getLeftElement();
              if ((eDocno == 6127 && fDocno == 1000000074)
                  || (eDocno == 6127 && fDocno == 1000000071)) {
                sLogger.info(key);
              }
              if (langID == CLIRUtils.E) {
                if (!pwsimMapping.containsKey(eDocno)) {
                  pwsimMapping.put(eDocno, new ArrayListOfIntsWritable());
                }
                pwsimMapping
                    .get(eDocno)
                    .add(
                        fDocno); // we add 1000000000 to foreign docnos to distinguish them during
                                 // pwsim algo
              } else {
                if (!pwsimMapping.containsKey(fDocno)) {
                  pwsimMapping.put(fDocno, new ArrayListOfIntsWritable());
                }
                pwsimMapping
                    .get(fDocno)
                    .add(
                        eDocno); // we add 1000000000 to foreign docnos to distinguish them during
                                 // pwsim algo
              }
              cnt++;
              key = (PairOfInts) reader.getKeyClass().newInstance();
              value = (IntWritable) reader.getValueClass().newInstance();
            }
            reader.close();
            sLogger.info(pwsimMapping.size() + "," + cnt + " pairs loaded from " + localFile);
          }
        }
      } catch (Exception e) {
        throw new RuntimeException(e);
      }
    }
Esempio n. 2
0
    public void map(
        IntWritable docnoKey,
        WikipediaPage p,
        OutputCollector<PairOfInts, PairOfIntString> output,
        Reporter reporter)
        throws IOException {
      int docno = docnoKey.get();
      String title = p.getTitle();
      String lang = p.getLanguage();
      int langID = lang.equals(srcLang) ? CLIRUtils.F : CLIRUtils.E;

      if (langID == CLIRUtils.F) {
        docno += 1000000000;
        if (samplesMap != null && !samplesMap.containsKey(docno)) {
          return;
        }
      }

      // we only load the mapping once, during the first map() call of a mapper.
      // this works b/c all input kv pairs of a given mapper will have same lang id (reason
      // explained above)
      if (pwsimMapping.isEmpty()) {
        loadPairs(pwsimMapping, langID, mJob, reporter);
        sLogger.info("Mapping loaded: " + pwsimMapping.size());
      }

      // if no similar docs for docno, return
      if (pwsimMapping.containsKey(docno)) {
        similarDocnos = pwsimMapping.get(docno);
      } else {
        return;
      }

      for (int similarDocno : similarDocnos) {
        if (langID == CLIRUtils.E) {
          if (samplesMap != null && !samplesMap.containsKey(similarDocno)) {
            continue;
          }
          keyOut.set(similarDocno, docno);
        } else {
          keyOut.set(docno, similarDocno);
        }
        valOut.set(langID, title);
        output.collect(keyOut, valOut);
      }
    }
Esempio n. 3
0
    public void map(
        ArrayListOfLongsWritable key,
        ArrayListWritable<IntWritable> sentenceList,
        OutputCollector<PairOfInts, IntWritable> output,
        Reporter reporter)
        throws IOException {
      IntWritable s1;
      IntWritable s2;
      int s1line;
      int s2line;
      for (int i = 0; i < sentenceList.size() && i < MAXSIZE; i++) {
        s1 = sentenceList.get(i);
        s1line = s1.get() / nSamples;
        for (int j = i + 1; j < sentenceList.size() && j < MAXSIZE; j++) {
          s2 = sentenceList.get(j);
          s2line = s2.get() / nSamples;
          pairOut = new PairOfInts();
          if (s1line == s2line) {
            continue;
          }
          /*
          if(((s1.get()/nSamples)%2 == 0 && (s2.get()/nSamples)%2 == 0) ||
                  ((s1.get()/nSamples)%2 != 0 && (s2.get()/nSamples)%2 != 0)){
              continue;
          }
          */
          if (s1.get() < s2.get()) {
            // pairOut.set(s1.get(), s2.get());
            pairOut.set(s1line, s2line);
          } else {
            // pairOut.set(s2.get(), s1.get());
            pairOut.set(s2line, s1line);
          }

          output.collect(pairOut, ONE);
        }
      }
    }
  /** Runs this tool. */
  @SuppressWarnings({"static-access"})
  public int run(String[] args) throws Exception {
    Options options = new Options();

    options.addOption(
        OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INDEX));
    options.addOption(
        OptionBuilder.withArgName("path")
            .hasArg()
            .withDescription("output path")
            .create(COLLECTION));

    CommandLine cmdline = null;
    CommandLineParser parser = new GnuParser();

    try {
      cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
      System.err.println("Error parsing command line: " + exp.getMessage());
      System.exit(-1);
    }

    if (!cmdline.hasOption(INDEX) || !cmdline.hasOption(COLLECTION)) {
      System.out.println("args: " + Arrays.toString(args));
      HelpFormatter formatter = new HelpFormatter();
      formatter.setWidth(120);
      formatter.printHelp(LookupPostingsCompressed.class.getName(), options);
      ToolRunner.printGenericCommandUsage(System.out);
      System.exit(-1);
    }

    String indexPath = cmdline.getOptionValue(INDEX);
    String collectionPath = cmdline.getOptionValue(COLLECTION);

    if (collectionPath.endsWith(".gz")) {
      System.out.println("gzipped collection is not seekable: use compressed version!");
      System.exit(-1);
    }

    Configuration config = new Configuration();
    FileSystem fs = FileSystem.get(config);
    MapFile.Reader reader = new MapFile.Reader(new Path(indexPath + "/part-r-00000"), config);

    FSDataInputStream collection = fs.open(new Path(collectionPath));
    BufferedReader d = new BufferedReader(new InputStreamReader(collection));

    Text key = new Text();
    ArrayListWritable<PairOfInts> postings;
    BytesWritable bytesValue = new BytesWritable();

    System.out.println("Looking up postings for the term \"starcross'd\"");
    key.set("starcross'd");

    reader.get(key, bytesValue);
    postings = deserializePosting(bytesValue);

    // ArrayListWritable<PairOfVInts> postings = value;
    for (PairOfInts pair : postings) {
      System.out.println(pair);
      collection.seek(pair.getLeftElement());
      System.out.println(d.readLine());
    }

    bytesValue = new BytesWritable();
    key.set("gold");
    reader.get(key, bytesValue);
    postings = deserializePosting(bytesValue);
    System.out.println(
        "Complete postings list for 'gold': (" + postings.size() + ", " + postings + ")");

    Int2IntFrequencyDistribution goldHist = new Int2IntFrequencyDistributionEntry();
    // postings = value;
    for (PairOfInts pair : postings) {
      goldHist.increment(pair.getRightElement());
    }

    System.out.println("histogram of tf values for gold");
    for (PairOfInts pair : goldHist) {
      System.out.println(pair.getLeftElement() + "\t" + pair.getRightElement());
    }

    bytesValue = new BytesWritable();
    key.set("silver");
    reader.get(key, bytesValue);
    postings = deserializePosting(bytesValue);
    System.out.println(
        "Complete postings list for 'silver': (" + postings.size() + ", " + postings + ")");

    Int2IntFrequencyDistribution silverHist = new Int2IntFrequencyDistributionEntry();
    // postings = value;
    for (PairOfInts pair : postings) {
      silverHist.increment(pair.getRightElement());
    }

    System.out.println("histogram of tf values for silver");
    for (PairOfInts pair : silverHist) {
      System.out.println(pair.getLeftElement() + "\t" + pair.getRightElement());
    }

    bytesValue = new BytesWritable();
    key.set("bronze");
    Writable w = reader.get(key, bytesValue);

    if (w == null) {
      System.out.println("the term bronze does not appear in the collection");
    }

    collection.close();
    reader.close();

    return 0;
  }
  @Test
  public void testIterable() {
    Int2IntFrequencyDistribution fd = new Int2IntFrequencyDistributionOpen();

    fd.set(1, 1);
    fd.set(4, 3);
    fd.set(2, 4);
    fd.set(5, 7);
    fd.set(6, 9);
    fd.set(3, 2);

    assertEquals(6, fd.getNumberOfEvents());
    assertEquals(26, fd.getSumOfCounts());

    SortedSet<PairOfInts> list = new TreeSet<PairOfInts>();

    for (PairOfInts pair : fd) {
      list.add(pair.clone());
    }

    assertEquals(6, list.size());

    Iterator<PairOfInts> iter = list.iterator();
    PairOfInts e = iter.next();
    assertEquals(1, e.getLeftElement());
    assertEquals(1, e.getRightElement());
    e = iter.next();
    assertEquals(2, e.getLeftElement());
    assertEquals(4, e.getRightElement());
    e = iter.next();
    assertEquals(3, e.getLeftElement());
    assertEquals(2, e.getRightElement());
    e = iter.next();
    assertEquals(4, e.getLeftElement());
    assertEquals(3, e.getRightElement());
    e = iter.next();
    assertEquals(5, e.getLeftElement());
    assertEquals(7, e.getRightElement());
    e = iter.next();
    assertEquals(6, e.getLeftElement());
    assertEquals(9, e.getRightElement());
  }
Esempio n. 6
0
  @SuppressWarnings("static-access")
  @Override
  public int run(String[] args) throws Exception {
    Options options = new Options();
    options.addOption(
        OptionBuilder.withArgName("path")
            .hasArg()
            .withDescription("output path")
            .create(matchOutput));
    options.addOption(
        OptionBuilder.withArgName("path")
            .hasArg()
            .withDescription("output path")
            .create(nomatchOutput));
    options.addOption(
        OptionBuilder.withArgName("integer")
            .hasArg()
            .withDescription("number of samples")
            .create(nSamplesOption));

    CommandLine cmdline;
    CommandLineParser parser = new GnuParser();
    try {
      cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
      System.err.println("Error parsing command line: " + exp.getMessage());
      return -1;
    }

    if (!cmdline.hasOption(matchOutput)
        || !cmdline.hasOption(nomatchOutput)
        || !cmdline.hasOption(nSamplesOption)) {
      HelpFormatter formatter = new HelpFormatter();
      formatter.setWidth(120);
      formatter.printHelp(this.getClass().getName(), options);
      ToolRunner.printGenericCommandUsage(System.out);
      return -1;
    }

    String matchOutputPath = cmdline.getOptionValue(matchOutput);
    String nomatchOutputPath = cmdline.getOptionValue(nomatchOutput);
    String nSamplesIn = cmdline.getOptionValue(nSamplesOption);

    LOG.info("Tool name: " + this.getClass().getName());
    // LOG.info(" - input file: " + inputPath);
    // LOG.info(" - output file: " + outputPath);

    JobConf conf = new JobConf(getConf(), JaccardCompare.class);
    conf.setJobName(String.format("JaccardCompare"));

    //        FileInputFormat.setInputPaths(conf, new Path(inputPath));
    //        FileOutputFormat.setOutputPath(conf, new Path(outputPath));

    int nSentences = 1000;
    int nSamples = Integer.parseInt(nSamplesIn);
    try {

      File matchFile = new File(matchOutputPath);
      File nomatchFile = new File(nomatchOutputPath);
      FileOutputStream fosM = null, fosNM = null;
      BufferedWriter dosM = null, dosNM = null;

      fosM = new FileOutputStream(matchFile);
      fosNM = new FileOutputStream(nomatchFile);
      dosM = new BufferedWriter(new OutputStreamWriter(fosM));
      dosNM = new BufferedWriter(new OutputStreamWriter(fosNM));

      MapFile.Reader id2sentenceReader =
          new MapFile.Reader(new Path("id2sentence.map/part-00000"), conf);
      HashMap<Integer, ArrayListWritable<Text>> id2sentence =
          new HashMap<Integer, ArrayListWritable<Text>>();
      IntWritable key = new IntWritable();
      ArrayListWritable<Text> val = new ArrayListWritable<Text>();
      while (id2sentenceReader.next(key, val)) {
        id2sentence.put(key.get(), val);
        val = new ArrayListWritable<Text>();
      }

      MapFile.Reader sentence2translationReader =
          new MapFile.Reader(new Path("sentence2translation.map/part-00000"), conf);
      HashMap<Integer, ArrayListOfIntsWritable> sentence2translation =
          new HashMap<Integer, ArrayListOfIntsWritable>();
      IntWritable key2 = new IntWritable();
      ArrayListOfIntsWritable val2 = new ArrayListOfIntsWritable();
      while (sentence2translationReader.next(key2, val2)) {
        sentence2translation.put(key2.get(), val2);
        val2 = new ArrayListOfIntsWritable();
      }

      MapFile.Reader sentencematchReader =
          new MapFile.Reader(new Path("sentencematchpairs.map/part-00000"), conf);
      HashSet<PairOfInts> sentencematchpairs = new HashSet<PairOfInts>();
      PairOfInts key3 = new PairOfInts();
      IntWritable val3 = new IntWritable();
      while (sentencematchReader.next(key3, val3)) {
        sentencematchpairs.add(key3);
        key3 = new PairOfInts();
      }

      System.out.println("Done reading");
      PairOfInts p = new PairOfInts();
      IntWritable match;
      IntWritable eLineNum = new IntWritable();
      IntWritable eLineId = new IntWritable();
      ArrayListWritable<Text> eSentence = new ArrayListWritable<Text>();
      for (int i = 0; i < nSentences; i++) {
        if (i % 100 == 0) System.out.println("eLine " + i);
        // eLineNum.set(2*i);
        ArrayListOfIntsWritable transIdList = sentence2translation.get(2 * i);
        // ArrayListOfIntsWritable transIdList = new ArrayListOfIntsWritable();
        // sentence2translationReader.get(eLineNum, transIdList);
        // System.out.println("transIdList " + transIdList);
        for (int j = 0; j < nSentences; j++) {
          // System.out.println("fLine " + j);
          ArrayListWritable<Text> fSentence = id2sentence.get((2 * j + 1) * nSamples);
          // ArrayListWritable<Text> fSentence = new ArrayListWritable<Text>();
          // IntWritable fLineId = new IntWritable();
          // fLineId.set((2*j+1)*nSamples);
          // id2sentenceReader.get(fLineId, fSentence);
          // System.out.println("fLineId " + (2*j+1)*nSamples + " FSentence " + fSentence);
          float jsimMax = -1.0f;
          float jsimAvg = 0.0f;
          for (int id : transIdList) {

            eSentence = id2sentence.get(id);
            // eLineId.set(id);
            // id2sentenceReader.get(eLineId, eSentence);
            float jsim = JaccardSim.jaccardSim(eSentence, fSentence);
            // System.out.println("\teSentence " + eSentence + " " + jsim);
            jsimAvg += jsim;
            if (jsim > jsimMax) {
              jsimMax = jsim;
            }
          }
          jsimAvg = jsimAvg / transIdList.size();
          if (2 * i < 2 * j + 1) {
            p.set(2 * i, 2 * j + 1);
          } else {
            p.set(2 * j + 1, 2 * i);
          }
          // match = new IntWritable();
          // match = (IntWritable) sentencematchReader.get(p, match);
          // if(match != null){
          if (sentencematchpairs.contains(p)) {
            if (jsimMax < .5) {
              System.out.println("Low match: ");
              System.out.println("\teSentence: " + i + " " + eSentence);
              System.out.println("\tfSentence: " + j + " " + fSentence);
            }
            // System.out.println("match");
            dosM.write(Float.toString(jsimMax));
            // dosM.write(Float.toString(jsimAvg));
            dosM.write("\n");
          } else {
            // System.out.println("no match");
            dosNM.write(Float.toString(jsimMax));
            // dosNM.write(Float.toString(jsimAvg));
            dosNM.write("\n");
          }
        }
      }
      sentencematchReader.close();
      sentence2translationReader.close();
      id2sentenceReader.close();
      dosM.close();
      dosNM.close();

    } catch (IOException e2) {
      // TODO Auto-generated catch block
      e2.printStackTrace();
    }

    // Delete the output directory if it exists already.
    //        Path outputDir = new Path(outputPath);
    // FileSystem.get(conf).delete(outputDir, true);

    // JobClient.runJob(conf);

    return 0;
  }