private void mergeProfiles(int p100Length, int gcpLength) {
log.info("Merging profiles");
ArrayList<AssayType> dummyAssay = new ArrayList<>();
dummyAssay.add(AssayType.GCP);
dummyAssay.add(AssayType.P100);
List<Profile> profiles = profileRepository.findByAssayTypeInOrderByConcatDesc(dummyAssay);
String prevConcat = null;
String curConcat;
List<Profile> bunchOfProfiles = null;
for (Profile profile : profiles) {
curConcat =
profile.getReplicateAnnotation().getCellId()
+ profile.getReplicateAnnotation().getPertiname();
if (prevConcat == null) {
prevConcat = curConcat;
bunchOfProfiles = new ArrayList<>();
}
if (!curConcat.equals(prevConcat)) {
prevConcat = curConcat;
MergedProfile mergedProfile =
UtilsTransform.mergeProfiles(bunchOfProfiles, p100Length, gcpLength);
mergedProfileRepository.save(mergedProfile);
bunchOfProfiles = new ArrayList<>();
} else {
bunchOfProfiles.add(profile);
}
}
}
