@Override
public void setProtocolStatus(
Protocol protocol,
ProtocolStatusEnum protocolStatusEnum,
User user,
Committee committee,
String note) {
try {
ProtocolStatus protocolStatus = new ProtocolStatus();
protocolStatus.setCauseByUser(user);
protocolStatus.setCausedByCommittee(committee);
protocolStatus.setModified(new Date());
protocolStatus.setNote(note);
protocolStatus.setProtocol(protocol);
protocolStatus.setProtocolStatus(protocolStatusEnum);
protocolStatus.setRetired(Boolean.FALSE);
protocolStatusDao.saveOrUpdate(protocolStatus);
String protocolMetaDataXml = protocol.getMetaDataXml();
protocolMetaDataXml =
xmlProcessor.replaceOrAddNodeValueByPath(
"/protocol/status",
protocolMetaDataXml,
org.apache.commons.lang.StringEscapeUtils.escapeXml(
protocolStatusEnum.getDescription()));
Map<String, String> attributes = Maps.newHashMap();
attributes.put("priority", protocolStatusEnum.getPriorityLevel());
protocolMetaDataXml =
xmlProcessor.addAttributesByPath("/protocol/status", protocolMetaDataXml, attributes);
protocol.setMetaDataXml(protocolMetaDataXml);
protocolDao.saveOrUpdate(protocol);
} catch (Exception e) {
e.printStackTrace();
}
}
@Override
public Protocol consolidateProtocol(Protocol protocol, List<String> xPathList) {
String protocolMetaData = protocol.getMetaDataXml();
Map<String, Object> resultMap = Maps.newHashMap();
for (String xPath : xPathList) {
try {
resultMap = xmlProcessor.deleteElementByPath(xPath, protocolMetaData);
} catch (Exception e) {
}
if (resultMap != null && !resultMap.isEmpty())
protocolMetaData = resultMap.get("finalXml").toString();
}
protocol.setMetaDataXml(protocolMetaData);
protocol = protocolDao.saveOrUpdate(protocol);
return protocol;
}
@Override
public void addPushedToEpic(Protocol protocol) {
try {
String protocolMetaData = protocol.getMetaDataXml();
protocolMetaData =
xmlProcessor.replaceOrAddNodeValueByPath(
"/protocol/pushed-to-epic", protocolMetaData, "y");
protocolMetaData =
xmlProcessor.replaceOrAddNodeValueByPath(
"/protocol/pushed-to-epic-date",
protocolMetaData,
DateFormatUtil.formateDateToMDY(new Date()));
protocol.setMetaDataXml(protocolMetaData);
protocol = protocolDao.saveOrUpdate(protocol);
} catch (Exception e) {
// don't care
}
}
@Override
public ProtocolFormXmlData creatNewProtocol(ProtocolFormType protocolFormType)
throws XPathExpressionException, IOException, SAXException {
Protocol p = new Protocol();
Date created = new Date();
p.setCreated(created);
p.setLocked(false);
p = protocolDao.saveOrUpdate(p);
p.setProtocolIdentifier(Long.toString(baseProtocolIdentifier + p.getId()));
// protocol.metadataxml always start with /protocol/
// String protocolMetaDataXmlString = "<protocol id=\"" + p.getId() + "\" identifier=\"" +
// p.getProtocolIdentifier() + "\" type=\""+ protocolFormType.getDescription()
// +"\"></protocol>";
String protocolMetaDataXmlString =
(protocolFormType.equals(ProtocolFormType.NEW_SUBMISSION))
? "<protocol id=\""
+ p.getId()
+ "\" identifier=\""
+ p.getProtocolIdentifier()
+ "\"></protocol>"
: "<protocol id=\""
+ p.getId()
+ "\" identifier=\""
+ p.getProtocolIdentifier()
+ "\" type=\""
+ protocolFormType.getDescription()
+ "\"></protocol>";
;
p.setMetaDataXml(protocolMetaDataXmlString);
p = protocolDao.saveOrUpdate(p);
String protocolFormXmlString =
"<"
+ protocolFormType.getBaseTag()
+ " id=\""
+ p.getId()
+ "\" identifier=\""
+ p.getProtocolIdentifier()
+ "\" type=\""
+ protocolFormType.getDescription()
+ "\"></"
+ protocolFormType.getBaseTag()
+ ">";
ProtocolForm f = new ProtocolForm();
f.setProtocolFormType(protocolFormType);
f.setProtocol(p);
f.setCreated(created);
f.setMetaDataXml(protocolFormXmlString);
f.setParent(f);
f.setLocked(false);
f = protocolFormDao.saveOrUpdate(f);
ProtocolFormXmlData fxd = new ProtocolFormXmlData();
fxd.setProtocolForm(f);
fxd.setXmlData(protocolFormXmlString);
fxd.setProtocolFormXmlDataType(protocolFormType.getDefaultProtocolFormXmlDataType());
fxd.setParent(fxd);
fxd.setCreated(created);
fxd = protocolFormXmlDataDao.saveOrUpdate(fxd);
Map<ProtocolFormXmlDataType, ProtocolFormXmlData> protocolFormXmlDatas =
new HashMap<ProtocolFormXmlDataType, ProtocolFormXmlData>(0);
protocolFormXmlDatas.put(protocolFormType.getDefaultProtocolFormXmlDataType(), fxd);
f.setTypedProtocolFormXmlDatas(protocolFormXmlDatas);
User currentUser = userService.getCurrentUser();
protocolFormService.triggerPIAction("CREATE", f, currentUser, null);
objectAclService.updateObjectAclByUser(Protocol.class, p.getId(), currentUser);
return fxd;
}