public static MetaResourceSet getPatientAndMedicationStatementEg()
throws DatatypeConfigurationException {
MetaResourceSet s1 = new MetaResourceSet();
Patient p = new Patient();
p.setId("Patient/1000000005");
MedicationStatement ms = new MedicationStatement();
ms.setId("MedicationStatement/1000000005-1");
ms.setPatient(FhirUtil.getResourceReferenceForRessource(p));
MetaResource mr1 = new MetaResource();
MetaData md1 = new MetaData();
// md1.setId(p.getId());
mr1.setResource(p);
mr1.setMetaData(md1);
GregorianCalendar gc = new GregorianCalendar();
md1.setLastUpdated(DatatypeFactory.newInstance().newXMLGregorianCalendar(gc));
s1.getMetaResource().add(mr1);
MetaResource mr2 = new MetaResource();
MetaData md2 = new MetaData();
// md2.setId(ms.getId());
mr2.setResource(ms);
mr2.setMetaData(md2);
md2.setLastUpdated(DatatypeFactory.newInstance().newXMLGregorianCalendar(gc));
s1.getMetaResource().add(mr2);
return s1;
}
private void fetchPatientList(
String i2b2User, String i2b2Token, String i2b2Url, String i2b2Domain, String projectId)
throws FhirServerException {
status.markProcessing(projectId);
try {
logger.trace("fetching all Patients for project:" + projectId);
String i2b2Xml = null;
Bundle b = new Bundle();
ArrayList<String> list = null;
if (serverConfigs.GetString(ConfigParameter.patientFetchMin) != null
&& serverConfigs.GetString(ConfigParameter.patientFetchMin).equals("true")) {
logger.debug("min call");
i2b2Xml = I2b2Util.getAllPatientsMin(i2b2User, i2b2Token, i2b2Url, i2b2Domain, projectId);
list = I2b2Util.getAllPatientsAsList(i2b2Xml);
for (String id : list) {
Patient p = new Patient();
p = (Patient) FhirUtil.setId(p, id);
BundleEntry be = new BundleEntry();
be.setResource(FhirUtil.getResourceContainer(p));
b.getEntry().add(be);
}
} else {
logger.debug("max call");
i2b2Xml = I2b2Util.getAllPatients(i2b2User, i2b2Token, i2b2Url, i2b2Domain, projectId);
list = I2b2Util.getAllPatientsAsList(i2b2Xml);
b = I2b2Util.getAllPatientsAsFhirBundle(i2b2Xml);
}
String bundleXml = JAXBUtil.toXml(b);
service.put(projectId, list, bundleXml);
} catch (Exception e) {
logger.error(e.getMessage(), e);
throw new FhirServerException("Could not fetch patient list from i2b2 server");
}
status.markComplete(projectId);
}
@Test
public void test() {
FhirUtil.initResourceClassList();
}