public void temporarilyCloseStudySiteToAccrualAndTreatment(Message message)
throws RemoteException {
List arguments = xmUtils.getArguments(message);
List<Identifier> identifiers = xmUtils.getDomainObjectsFromList(Identifier.class, arguments);
if (identifiers.size() == 0) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is atleast one identifier in the message.");
}
List<HealthcareSite> heaList =
xmUtils.getDomainObjectsFromList(HealthcareSite.class, arguments);
if (heaList.size() != 1) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is atleast one healtcare site defination in the message.");
}
WebRequest webRequest =
SessionAndAuditHelper.setupHibernateSessionAndAudit(
interceptor, "C3PR Admin", "Coordinating Center", new Date(), "Coordinating Center");
try {
// TODO fix it later
// studyRepository.temporarilyCloseStudySiteToAccrualAndTreatment(identifiers,
// heaList.get(0).getPrimaryIdentifier());
} catch (Exception e) {
throw new RemoteException(e.getMessage());
} finally {
SessionAndAuditHelper.tearDownHibernateSession(interceptor, webRequest);
}
}
public void createStudyDefinition(Message message) throws RemoteException {
List<Study> objects =
xmUtils.getDomainObjectsFromList(Study.class, xmUtils.getArguments(message));
if (objects.size() != 1) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is exactly one study defination in the message.");
}
WebRequest webRequest =
SessionAndAuditHelper.setupHibernateSessionAndAudit(
interceptor, "C3PR Admin", "Coordinating Center", new Date(), "Coordinating Center");
try {
Study study = objects.get(0);
studyFactory.buildStudy(study);
for (StudySite studySite : study.getStudySites()) {
studySite.setHostedMode(false);
// TODO fix it later
// studySite.setSiteStudyStatus(SiteStudyStatus.PENDING);
}
for (StudyCoordinatingCenter studyCoordinatingCenter : study.getStudyCoordinatingCenters()) {
studyCoordinatingCenter.setHostedMode(false);
}
study.setCoordinatingCenterStudyStatus(CoordinatingCenterStudyStatus.PENDING);
studyDao.save(study);
studyRepository.createStudy(study.getIdentifiers());
} catch (C3PRCodedException e) {
throw new RemoteException("error building the study", e);
} finally {
SessionAndAuditHelper.tearDownHibernateSession(interceptor, webRequest);
}
}
public void activateStudySite(gov.nih.nci.cabig.ccts.domain.Message message)
throws RemoteException {
List arguments = xmUtils.getArguments(message);
List<Identifier> identifiers = xmUtils.getDomainObjectsFromList(Identifier.class, arguments);
if (identifiers.size() == 0) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is atleast one identifier in the message.");
}
List<StudySite> studySiteList = xmUtils.getDomainObjectsFromList(StudySite.class, arguments);
if (studySiteList.size() != 1) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is atleast one study site defination in the message.");
}
WebRequest webRequest =
SessionAndAuditHelper.setupHibernateSessionAndAudit(
interceptor, "C3PR Admin", "Coordinating Center", new Date(), "Coordinating Center");
try {
StudySite studySite =
studyRepository
.getUniqueStudy(identifiers)
.getStudySite(studySiteList.get(0).getHealthcareSite().getPrimaryIdentifier());
studySite.setIrbApprovalDate(studySiteList.get(0).getIrbApprovalDate());
// TODO fix it later
// studySite.setStartDate(studySiteList.get(0).getStartDate());
studySiteDao.save(studySite);
// TODO fix it later
// studyRepository.activateStudySite(identifiers,
// studySiteList.get(0).getHealthcareSite().getPrimaryIdentifier());
} catch (Exception e) {
throw new RemoteException(e.getMessage());
} finally {
SessionAndAuditHelper.tearDownHibernateSession(interceptor, webRequest);
}
}
public void temporarilyCloseStudyToAccrualAndTreatment(Message message) throws RemoteException {
List<Identifier> objects =
xmUtils.getDomainObjectsFromList(Identifier.class, xmUtils.getArguments(message));
if (objects.size() == 0) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is atleast one identifier in the message.");
}
WebRequest webRequest =
SessionAndAuditHelper.setupHibernateSessionAndAudit(
interceptor, "C3PR Admin", "Coordinating Center", new Date(), "Coordinating Center");
try {
studyRepository.temporarilyCloseStudyToAccrualAndTreatment(objects);
} catch (Exception e) {
throw new RemoteException(e.getMessage());
} finally {
SessionAndAuditHelper.tearDownHibernateSession(interceptor, webRequest);
}
}
/**
* Gets the correlation nodes from payload xml.
*
* @param correlationNodeXmlPayload the correlation node xml payload
* @return the correlation nodes from payload xml
*/
public List<CorrelationNode> getCorrelationNodesFromPayloadXml(String correlationNodeXmlPayload) {
String correlationNodeArrayXml = "";
try {
correlationNodeArrayXml =
personOrganizationResolverUtils.broadcastSearchCorrelationsWithEntities(
correlationNodeXmlPayload, true, true);
} catch (Exception e) {
log.error(e.getStackTrace());
}
List<String> correlationNodes = XMLUtils.getObjectsFromCoppaResponse(correlationNodeArrayXml);
List<CorrelationNode> correlationNodeList = new ArrayList<CorrelationNode>();
// creating a list of correlationNodes
for (String correlationNode : correlationNodes) {
correlationNodeList.add(CoppaObjectFactory.getCorrelationNodeObjectFromXml(correlationNode));
}
return correlationNodeList;
}
/**
* Search role based on organization.
*
* @param organizationNciIdentifier the organization nci identifier
* @param role the role
* @return the list
* @return
*/
protected List<Object> searchRoleBasedOnOrganization(
String organizationNciIdentifier, gov.nih.nci.coppa.po.Correlation role) {
// Get IdentifiedOrganization by ctepId
IdentifiedOrganization identifiedOrganizationSearchCriteria =
CoppaObjectFactory.getCoppaIdentfiedOrganizationSearchCriteriaOnCTEPId(
organizationNciIdentifier);
String payload =
CoppaObjectFactory.getCoppaIdentfiedOrganization(identifiedOrganizationSearchCriteria);
String results = null;
try {
results = personOrganizationResolverUtils.broadcastIdentifiedOrganizationSearch(payload);
} catch (C3PRCodedException e) {
log.error(e.getMessage());
}
// Assuming here that the ctepCode search yields exactly one organization
List<String> resultObjects = XMLUtils.getObjectsFromCoppaResponse(results);
if (resultObjects.size() == 0) {
return new ArrayList<Object>();
}
if (resultObjects.size() > 1) {
log.error(
"searchStaffBasedOnOrganization: The ctep code matches more than one organization. The current implementation uses only the first match as it"
+ "assumes the ctep code search to always yield one exact match.");
}
IdentifiedOrganization coppaIdOrganization =
CoppaObjectFactory.getCoppaIdentfiedOrganization(resultObjects.get(0));
II organizationIdentifier = coppaIdOrganization.getPlayerIdentifier();
Organization organization =
CoppaObjectFactory.getCoppaOrganizationFromII(organizationIdentifier);
String correlationNodeXmlPayload =
CoppaObjectFactory.getCorrelationNodePayload(role, null, organization);
List<CorrelationNode> correlationNodeList =
personOrganizationResolverUtils.getCorrelationNodesFromPayloadXml(
correlationNodeXmlPayload);
List<Object> remoteStaffList =
getRemoteRolesFromCorrelationNodesList(correlationNodeList, coppaIdOrganization, null);
return remoteStaffList;
}