/**
* Activate rules for accruals. Called for new registrations only. Checks if accrual notifications
* are configured. Fires rules if thresholds are met.
*
* @param studySubjectObj the study subject obj
*/
private void activateRulesForAccruals(Object studySubjectObj) {
StudySubject studySubject = null;
StudyOrganization studyOrg = null;
StudySite studySite = null;
if (studySubjectObj instanceof StudySubject) {
studySubject = (StudySubject) studySubjectObj;
} else {
return;
}
List<Object> objects = new ArrayList<Object>();
objects.add(studySubject);
int studyAccruals = 0;
int threshold = 0;
List<HealthcareSite> hcsList = getSites(studySubject);
for (PlannedNotification pn : getPlannedNotifications(hcsList)) {
if (pn.getEventName().equals(NotificationEventTypeEnum.STUDY_ACCRUAL_EVENT)) {
Iterator<StudyOrganization> iter =
studySubject.getStudySite().getStudy().getStudyOrganizations().iterator();
while (iter.hasNext()) {
studyOrg = iter.next();
// ensure that the host org is in the studyOrg list for the study
if (studyOrg
.getHealthcareSite()
.getPrimaryIdentifier()
.equalsIgnoreCase(configuration.get(Configuration.LOCAL_NCI_INSTITUTE_CODE))) {
studyAccruals = calculateStudyAccrual(studySubject);
threshold = studySubject.getStudySite().getStudy().getTargetAccrualNumber().intValue();
// if accruals exceed specified threshold value then send out email
if (studyAccruals * 100 / threshold >= pn.getStudyThreshold()) {
objects.add(pn);
rulesDelegationService.activateRules(
NotificationEventTypeEnum.STUDY_ACCRUAL_EVENT, objects);
}
}
}
}
if (pn.getEventName().equals(NotificationEventTypeEnum.STUDY_SITE_ACCRUAL_EVENT)) {
studySite = studySubject.getStudySite();
// ensure that the host org is in the studySite list for the study
if (studySite
.getHealthcareSite()
.getPrimaryIdentifier()
.equalsIgnoreCase(configuration.get(Configuration.LOCAL_NCI_INSTITUTE_CODE))) {
studyAccruals = calculateStudySiteAccrual(studySubject);
threshold = studySubject.getStudySite().getTargetAccrualNumber().intValue();
// if accruals exceed specified threshold value then send out email
if ((studyAccruals / threshold) * 100 >= pn.getStudySiteThreshold()) {
objects.add(pn);
rulesDelegationService.activateRules(
NotificationEventTypeEnum.STUDY_SITE_ACCRUAL_EVENT, objects);
}
}
}
}
}
@Override
public boolean checkAuthorization(
Authentication authentication, String privilege, Object object) {
boolean authorize = false;
StudyOrganization studyOrganization = null;
StudyOrganization studyCoordinatingCenter = null;
if (object instanceof StudyOrganization) {
studyOrganization = (StudyOrganization) object;
studyCoordinatingCenter = studyOrganization.getStudy().getStudyCoordinatingCenter();
}
// super.checkAuthorization will enforce that the logged in user only sees his organization.
// however if the logged in user is a Coordinating center for the study being viewed the he
// shud be able to see all sites
if (studyCoordinatingCenter != null) {
authorize = super.checkAuthorization(authentication, privilege, studyCoordinatingCenter);
}
return authorize ? authorize : super.checkAuthorization(authentication, privilege, object);
}
/**
* Gets the sites. Returns the list of sites associated with the
* study/studySite/studySubject(depending on the event).
*
* @param entity the entity
* @return the sites
*/
private List<HealthcareSite> getSites(Object entity) {
List<HealthcareSite> hcsList = new ArrayList<HealthcareSite>();
if (entity instanceof StudySubject) {
// Original code, commented out for the time-being.
/*if(((StudySubject)entity).getStudySite() != null){
hcsList.add(((StudySubject)entity).getStudySite().getHealthcareSite());
hcsList.add(((StudySubject)entity).getStudySite().getStudy().getStudyCoordinatingCenter().getHealthcareSite());
}*/
// Try this if the above doesn't work
StudySubject studySubject = (StudySubject) entity;
if (studySubject.getStudySubjectStudyVersion() != null
&& studySubject.getStudySubjectStudyVersion().getStudySiteStudyVersion() != null) {
hcsList.add(
studySubject
.getStudySubjectStudyVersion()
.getStudySiteStudyVersion()
.getStudySite()
.getHealthcareSite());
hcsList.add(
studySubject
.getStudySiteVersion()
.getStudyVersion()
.getStudy()
.getStudyCoordinatingCenter()
.getHealthcareSite());
}
}
if (entity instanceof StudySubjectStudyVersion) {
StudySubjectStudyVersion studySubjectStudyVersion = (StudySubjectStudyVersion) entity;
hcsList.add(
studySubjectStudyVersion.getStudySiteStudyVersion().getStudySite().getHealthcareSite());
hcsList.add(
studySubjectStudyVersion
.getStudySiteStudyVersion()
.getStudySite()
.getStudy()
.getStudyCoordinatingCenter()
.getHealthcareSite());
}
if (entity instanceof SiteStatusHistory) {
hcsList.add(((SiteStatusHistory) entity).getStudySite().getHealthcareSite());
hcsList.add(
((SiteStatusHistory) entity)
.getStudySite()
.getStudy()
.getStudyCoordinatingCenter()
.getHealthcareSite());
}
if (entity instanceof StudySite) {
hcsList.add(((StudySite) entity).getHealthcareSite());
hcsList.add(((StudySite) entity).getStudy().getStudyCoordinatingCenter().getHealthcareSite());
}
if (entity instanceof Study) {
for (StudyOrganization so : ((Study) entity).getStudyOrganizations()) {
hcsList.add(so.getHealthcareSite());
}
}
// defaulting to the hosting site if nothing is found
if (hcsList.size() == 0) {
String localNciCode = this.configuration.get(Configuration.LOCAL_NCI_INSTITUTE_CODE);
hcsList.add(healthcareSiteDao.getByPrimaryIdentifierFromLocal(localNciCode));
}
removeDuplicates(hcsList);
return hcsList;
}