/**
* For the first time a curation page is opened, create a MergeCas that contains only agreeing
* annotations Using the CAS of the curator user.
*
* @param aProject the project
* @param randomAnnotationDocument an annotation document.
* @param jCases the JCases
* @param aAnnotationLayers the layers.
* @return the JCas.
* @throws IOException if an I/O error occurs.
*/
public JCas createCurationCas(
Project aProject,
AnnotationDocument randomAnnotationDocument,
Map<String, JCas> jCases,
List<AnnotationLayer> aAnnotationLayers)
throws IOException {
User userLoggedIn =
userRepository.get(SecurityContextHolder.getContext().getAuthentication().getName());
JCas mergeJCas = repository.readAnnotationCas(randomAnnotationDocument);
jCases.put(CurationPanel.CURATION_USER, mergeJCas);
List<Type> entryTypes = getEntryTypes(mergeJCas, aAnnotationLayers, annotationService);
DiffResult diff =
CasDiff2.doDiffSingle(
annotationService,
aProject,
entryTypes,
jCases,
0,
mergeJCas.getDocumentText().length());
for (Entry<Position, ConfigurationSet> diffEntry :
diff.getDifferingConfigurationSets().entrySet()) {
// Remove FSes with differences from the merge CAS
List<Configuration> cfgsForCurationUser =
diffEntry.getValue().getConfigurations(CurationPanel.CURATION_USER);
for (Configuration cfg : cfgsForCurationUser) {
FeatureStructure fs = cfg.getFs(CurationPanel.CURATION_USER, jCases);
mergeJCas.removeFsFromIndexes(fs);
}
}
repository.writeCurationCas(mergeJCas, randomAnnotationDocument.getDocument(), userLoggedIn);
return mergeJCas;
}
