@Override
public void setup(Context context) {
this.context = context;
classIndex = ClassIndex.getInstance();
Configuration conf = context.getConfiguration();
float threshold = conf.getFloat(Util.CONF_MINIMUM_DF_OF_HOSTS, 0);
try {
Path headerPath = new Path(conf.get(Util.CONF_HEADER_PATH));
LOG.info("Reading dataset header..." + headerPath.toString());
header = new DataSetHeader(conf, headerPath);
if (!classIndex.isPopulated()) {
classIndex.init(conf);
classIndex.populateIndex();
}
if (threshold > 0.0) {
LOG.info("loading DF values");
hostsWithMinimumDF = Util.getHostsWithDocumentFrequencies(conf, threshold);
}
LOG.info("loading training data...");
loadTrainingInstances(conf.get(Util.CONF_TRAINING_DATE));
} catch (Exception e) {
LOG.error("setup failed with an exception!");
e.printStackTrace();
setupFailedException = e;
}
}
public void loadTrainingInstances(String date) throws IOException, ClassNotFoundException {
String line = null;
// TIntByteHashMap map = null;
Path file = null;
Configuration conf = context.getConfiguration();
Path trainingPath =
new Path(
conf.get(Util.CONF_DATASET_PATH)
+ "/"
+ conf.get(Util.CONF_SESSION_DURATION)
+ "/"
+ conf.get(Util.CONF_OPTIONS)
+ "/"
+ date);
FileSystem fs = FileSystem.get(conf);
trainingInstances = new TLinkedHashSet<Instance>();
for (FileStatus fileStatus : fs.listStatus(trainingPath)) {
if (fileStatus.isDir()) {
continue;
}
file = fileStatus.getPath();
LOG.info("reading from " + file + "...");
FSDataInputStream in = fs.open(file);
BufferedReader reader = new BufferedReader(new InputStreamReader(in));
int i = 0;
while (true) {
line = reader.readLine();
if (i++ % 10000 == 0) {
Util.ping(context, JaccardTestMapper.class);
i = 0;
}
if (line == null) {
break;
}
Instance instance;
try {
instance = Instance.fromString(header, line, context);
} catch (Exception e) {
LOG.warn("Skipping invalid instance: " + line);
continue;
}
trainingInstances.add(instance);
}
}
line = null;
LOG.info("training day has " + trainingInstances.size() + " classes/instances");
Util.getMemoryInfo(JaccardTestMapper.class);
}
/** The main entry point if this class is called as a {@link Tool}. */
@Override
public int run(String[] args) throws Exception {
Path inputPath = null;
Path outputPath = null;
Configuration conf = getConf();
// retrieve our paths from the configuration
inputPath = new Path(conf.get(Util.CONF_LOGDATA_PATH));
outputPath = new Path(conf.get(Util.CONF_CACHING_SIMULATOR_PATH));
final int numCores = conf.getInt(Util.CONF_NUM_CORES, Util.DEFAULT_NUM_CORES);
final int numNodes = conf.getInt(Util.CONF_NUM_NODES, Util.DEFAULT_NUM_NODES);
NUM_OF_REDUCE_TASKS = numCores * numNodes;
// set the jobname
String jobName =
Util.JOB_NAME
+ " ["
+ CachingTool.ACTION
+ "] {logdata="
+ inputPath.getName()
+ ", session="
+ conf.get(Util.CONF_SESSION_DURATION)
+ "}";
Util.showStatus("Running " + jobName);
conf.set("hadoop.job.ugi", Util.HADOOP_USER);
conf.set("mapred.child.java.opts", "-Xmx1500M -XX:+UseConcMarkSweepGC -XX:+CMSIncrementalMode");
conf.set("mapred.task.timeout", "1800000");
conf.set("mapred.map.tasks.speculative.execution", "false");
conf.set("mapred.reduce.tasks.speculative.execution", "false");
FileSystem fs = FileSystem.get(conf);
Job job = new Job(conf, jobName);
// set number of reduce tasks
job.setNumReduceTasks(NUM_OF_REDUCE_TASKS);
// set mapper, reducer, partitioner and grouping comperator
job.setJarByClass(CachingTool.class);
job.setMapperClass(CachingMapper.class);
job.setReducerClass(CachingReducer.class);
// GroupingComperator used for Secondary-Sort
job.setGroupingComparatorClass(TextPair.FirstComparator.class);
job.setPartitionerClass(TextPair.FirstPartitioner.class);
job.setOutputKeyClass(TextPair.class);
job.setOutputValueClass(Text.class);
// set input and output format
job.setInputFormatClass(TextInputFormat.class);
job.setOutputFormatClass(TextOutputFormat.class);
FileInputFormat.setMaxInputSplitSize(job, Util.DATASET_MB_SPLIT * 25);
FileInputFormat.setMinInputSplitSize(job, Util.DATASET_MB_SPLIT * 25);
// add input path subdirectories if there are any
ArrayList<Path> inputPaths = Util.getInputDirectories(fs, inputPath);
int pathsAdded = 0;
if (inputPaths.size() > 0) {
for (Path p : inputPaths) {
if (!p.getName().contains(".") && !p.getName().contains("_")) {
Util.showStatus("Adding input paths " + p);
FileInputFormat.addInputPath(job, p);
pathsAdded++;
}
}
}
if (pathsAdded == 0) {
Util.showStatus("Adding input path " + inputPath);
FileInputFormat.addInputPath(job, inputPath);
}
// clear output dir
fs.delete(outputPath.suffix("/" + conf.get(Util.CONF_SESSION_DURATION)), true);
FileOutputFormat.setOutputPath(
job, outputPath.suffix("/" + conf.get(Util.CONF_SESSION_DURATION)));
// run the job and wait for it to be completed
boolean b = job.waitForCompletion(true);
// NOTE! The counters will be written HERE
// retrieve the counters
Counter numNewInCache = job.getCounters().findCounter(CachingReducer.CacheCounter.NEW_TO_CACHE);
Counter numRenewCache = job.getCounters().findCounter(CachingReducer.CacheCounter.RENEW_CACHE);
Counter numUsedFromCache =
job.getCounters().findCounter(CachingReducer.CacheCounter.USED_FROM_CACHE);
// write the counters to the metadata file
Path headerPath = new Path(conf.get(Util.CONF_CACHING_SIMULATOR_PATH));
FSDataOutputStream out =
fs.create(headerPath.suffix("/" + DataSetHeader.SIMULATE_CACHING_METADATA_FILE));
PrintWriter w = new PrintWriter(out);
// the sum of all counters equals the sum of all queries in the log file
w.println("hostnametypeAddedToCache=" + numNewInCache.getValue());
w.println("queriesAddedAgainToCache=" + numRenewCache.getValue());
w.println("queriesAnsweredFromCache=" + numUsedFromCache.getValue());
w.close();
out.close();
// Delete all empty output files
Util.deleteEmptyFiles(fs, outputPath.suffix("/" + conf.get(Util.CONF_SESSION_DURATION)));
return b ? 1 : 0;
}