/**
* Construct new configuration information source
*
* @param xmlFile xml file associated with configuration info
*/
public PropertyConfig(String prefix, String tag) {
// Get the prefix.tag property (and all of its children) from Cytoscape properties
this.prefix = prefix;
Properties props = CytoscapeInit.getProperties();
String xml = props.getProperty(prefix + "." + tag);
// System.out.println("Property "+prefix+"."+tag+" from Cytoscape = "+xml);
this.root = xmlParse(xml, tag);
if (this.root == null) this.root = new PropertyConfigNode(tag);
}
/** Store current configuration data structure into property sheet */
public void store() {
// The configuration data is stored in a non-binary tree where
// each node in the tree can have children and a value. In order
// to serialize this, and avoid potential naming problems, I've
// added indices to indicate children.
Properties props = CytoscapeInit.getProperties();
String config = getProperty(root);
// System.out.println("Setting property "+prefix+"."+root.getName()+" to "+config);
props.setProperty(prefix + "." + root.getName(), config);
}
/** Contains a CyNetworkView. */
protected void createContainer(final CyNetworkView view) {
if (networkViewMap.containsKey(view.getNetwork().getIdentifier())) return;
// create a new InternalFrame and put the CyNetworkViews Component into
// it
final JInternalFrame iframe = new JInternalFrame(view.getTitle(), true, true, true, true);
iframe.addInternalFrameListener(
new InternalFrameAdapter() {
public void internalFrameClosing(InternalFrameEvent e) {
Cytoscape.destroyNetworkView(view);
}
});
desktopPane.add(iframe);
// code added to support layered canvas for each CyNetworkView
if (view instanceof DGraphView) {
final InternalFrameComponent internalFrameComp =
new InternalFrameComponent(iframe.getLayeredPane(), (DGraphView) view);
iframe.getContentPane().add(internalFrameComp);
internalFrameComponentMap.put(view.getNetwork().getIdentifier(), internalFrameComp);
} else {
logger.info("NetworkViewManager.createContainer() - DGraphView not found!");
iframe.getContentPane().add(view.getComponent());
}
iframe.pack();
int x = 0;
int y = 0;
JInternalFrame refFrame = null;
JInternalFrame[] allFrames = desktopPane.getAllFrames();
if (allFrames.length > 1) {
refFrame = allFrames[0];
}
if (refFrame != null) {
x = refFrame.getLocation().x + 20;
y = refFrame.getLocation().y + 20;
}
if (x > (desktopPane.getWidth() - MINIMUM_WIN_WIDTH)) {
x = desktopPane.getWidth() - MINIMUM_WIN_WIDTH;
}
if (y > (desktopPane.getHeight() - MINIMUM_WIN_HEIGHT)) {
y = desktopPane.getHeight() - MINIMUM_WIN_HEIGHT;
}
if (x < 0) {
x = 0;
}
if (y < 0) {
y = 0;
}
iframe.setBounds(x, y, 400, 400);
// maximize the frame if the specified property is set
try {
String max = CytoscapeInit.getProperties().getProperty("maximizeViewOnCreate");
if ((max != null) && Boolean.parseBoolean(max)) iframe.setMaximum(true);
} catch (PropertyVetoException pve) {
logger.warn("Unable to maximize internal frame: " + pve.getMessage());
}
iframe.setVisible(true);
iframe.addInternalFrameListener(this);
iframe.setResizable(true);
networkViewMap.put(view.getNetwork().getIdentifier(), iframe);
componentMap.put(iframe, view.getNetwork().getIdentifier());
firePropertyChange(
CytoscapeDesktop.NETWORK_VIEW_FOCUSED, null, view.getNetwork().getIdentifier());
}