@Override
public SpecimenRequirement createSpecimenRequirement(SpecimenRequirementDetail detail) {
SpecimenRequirement requirement = new SpecimenRequirement();
OpenSpecimenException ose = new OpenSpecimenException(ErrorType.USER_ERROR);
requirement.setId(detail.getId());
requirement.setName(detail.getName());
requirement.setLineage(Specimen.NEW);
setCode(detail, requirement, ose);
setLabelFormat(detail, requirement, ose);
setLabelAutoPrintMode(detail, requirement, ose);
setSpecimenClass(detail, requirement, ose);
setSpecimenType(detail, requirement, ose);
setAnatomicSite(detail, requirement, ose);
setLaterality(detail, requirement, ose);
setPathologyStatus(detail, requirement, ose);
setStorageType(detail, requirement, ose);
setInitialQty(detail, requirement, ose);
setConcentration(detail, requirement, ose);
setCollector(detail, requirement, ose);
setCollectionProcedure(detail, requirement, ose);
setCollectionContainer(detail, requirement, ose);
setReceiver(detail, requirement, ose);
setCpe(detail, requirement, ose);
requirement.setSortOrder(detail.getSortOrder());
requirement.setActivityStatus(Status.ACTIVITY_STATUS_ACTIVE.getStatus());
ose.checkAndThrow();
setSpecimenPoolReqs(detail, requirement, ose);
return requirement;
}
@Override
public SpecimenRequirement createDerived(DerivedSpecimenRequirement req) {
OpenSpecimenException ose = new OpenSpecimenException(ErrorType.USER_ERROR);
Long parentId = req.getParentSrId();
if (parentId == null) {
ose.addError(PARENT_REQ_REQUIRED);
throw ose;
}
SpecimenRequirement parent = daoFactory.getSpecimenRequirementDao().getById(parentId);
if (parent == null) {
ose.addError(SrErrorCode.PARENT_NOT_FOUND);
throw ose;
}
SpecimenRequirement derived = parent.copy();
derived.setLabelFormat(null);
derived.setLineage(Specimen.DERIVED);
setSpecimenClass(req.getSpecimenClass(), derived, ose);
setSpecimenType(req.getSpecimenClass(), req.getType(), derived, ose);
setInitialQty(req.getQuantity(), derived, ose);
setStorageType(req.getStorageType(), derived, ose);
setConcentration(req.getConcentration(), derived, ose);
setPathologyStatus(req.getPathology(), derived, ose);
setLabelFormat(req.getLabelFmt(), derived, ose);
setLabelAutoPrintMode(req.getLabelAutoPrintMode(), derived, ose);
setCode(req.getCode(), derived, ose);
derived.setName(req.getName());
ose.checkAndThrow();
derived.setParentSpecimenRequirement(parent);
return derived;
}
@Override
public List<SpecimenRequirement> createAliquots(AliquotSpecimensRequirement req) {
OpenSpecimenException ose = new OpenSpecimenException(ErrorType.USER_ERROR);
Long parentSrId = req.getParentSrId();
if (parentSrId == null) {
ose.addError(PARENT_REQ_REQUIRED);
throw ose;
}
SpecimenRequirement parent = daoFactory.getSpecimenRequirementDao().getById(parentSrId);
if (parent == null) {
ose.addError(SrErrorCode.PARENT_NOT_FOUND);
throw ose;
}
if (req.getNoOfAliquots() == null || req.getNoOfAliquots() < 1L) {
ose.addError(SrErrorCode.INVALID_ALIQUOT_CNT);
throw ose;
}
if (req.getQtyPerAliquot() == null || NumUtil.lessThanEqualsZero(req.getQtyPerAliquot())) {
ose.addError(SrErrorCode.INVALID_QTY);
}
BigDecimal total = NumUtil.multiply(req.getQtyPerAliquot(), req.getNoOfAliquots());
if (NumUtil.greaterThan(total, parent.getQtyAfterAliquotsUse())) {
ose.addError(SrErrorCode.INSUFFICIENT_QTY);
}
List<SpecimenRequirement> aliquots = new ArrayList<SpecimenRequirement>();
for (int i = 0; i < req.getNoOfAliquots(); ++i) {
SpecimenRequirement aliquot = parent.copy();
aliquot.setLabelFormat(null);
aliquot.setLineage(Specimen.ALIQUOT);
setStorageType(req.getStorageType(), aliquot, ose);
setLabelFormat(req.getLabelFmt(), aliquot, ose);
setLabelAutoPrintMode(req.getLabelAutoPrintMode(), aliquot, ose);
aliquot.setInitialQuantity(req.getQtyPerAliquot());
aliquot.setParentSpecimenRequirement(parent);
aliquots.add(aliquot);
ose.checkAndThrow();
}
return aliquots;
}