@Override
  public VirtualFile[] getSourceRoots(Module module) {
    VirtualFile[] cachedRoots = myModuleToRootsCache.get(module);
    if (cachedRoots != null) {
      if (areFilesValid(cachedRoots)) {
        return cachedRoots;
      } else {
        myModuleToRootsCache.remove(
            module); // clear cache for this module and rebuild list of roots
      }
    }

    Set<VirtualFile> additionalRoots = myModuleToRootsMap.get(module);
    VirtualFile[] moduleRoots = ModuleRootManager.getInstance(module).getSourceRoots();
    if (additionalRoots == null || additionalRoots.isEmpty()) {
      myModuleToRootsCache.put(module, moduleRoots);
      return moduleRoots;
    }

    final VirtualFile[] allRoots = new VirtualFile[additionalRoots.size() + moduleRoots.length];
    System.arraycopy(moduleRoots, 0, allRoots, 0, moduleRoots.length);
    int index = moduleRoots.length;
    for (final VirtualFile additionalRoot : additionalRoots) {
      allRoots[index++] = additionalRoot;
    }
    myModuleToRootsCache.put(module, allRoots);
    return allRoots;
  }
 private String getOutputDir(final Module module) {
   if (myModuleToOutput.containsKey(module)) {
     return myModuleToOutput.get(module);
   }
   final VirtualFile outputDirectory = myCompileContext.getModuleOutputDirectory(module);
   final String out = outputDirectory != null ? outputDirectory.getPath() : null;
   myModuleToOutput.put(module, out);
   return out;
 }
 private VirtualFile getTempDir(Module module) throws IOException {
   VirtualFile tempDir = myModuleToTempDirMap.get(module);
   if (tempDir == null) {
     final String projectName = myProject.getName();
     final String moduleName = module.getName();
     File tempDirectory = FileUtil.createTempDirectory(projectName, moduleName);
     tempDir = LocalFileSystem.getInstance().refreshAndFindFileByIoFile(tempDirectory);
     if (tempDir == null) {
       LOG.error("Cannot locate temp directory " + tempDirectory.getPath());
     }
     myModuleToTempDirMap.put(module, tempDir);
   }
   return tempDir;
 }
 @Override
 public Module getModuleByFile(VirtualFile file) {
   final Module module = myProjectFileIndex.getModuleForFile(file);
   if (module != null) {
     LOG.assertTrue(!module.isDisposed());
     return module;
   }
   for (final VirtualFile root : myRootToModuleMap.keySet()) {
     if (VfsUtil.isAncestor(root, file, false)) {
       final Module mod = myRootToModuleMap.get(root);
       if (mod != null) {
         LOG.assertTrue(!mod.isDisposed());
       }
       return mod;
     }
   }
   return null;
 }
  private void runTransformingCompilers(final ModuleChunk chunk) {
    final JavaSourceTransformingCompiler[] transformers =
        CompilerManager.getInstance(myProject).getCompilers(JavaSourceTransformingCompiler.class);
    if (transformers.length == 0) {
      return;
    }
    if (LOG.isDebugEnabled()) {
      LOG.debug("Running transforming compilers...");
    }
    final Module[] modules = chunk.getModules();
    for (final JavaSourceTransformingCompiler transformer : transformers) {
      final Map<VirtualFile, VirtualFile> originalToCopyFileMap =
          new HashMap<VirtualFile, VirtualFile>();
      final Application application = ApplicationManager.getApplication();
      application.invokeAndWait(
          new Runnable() {
            public void run() {
              for (final Module module : modules) {
                for (final VirtualFile file : chunk.getFilesToCompile(module)) {
                  final VirtualFile untransformed = chunk.getOriginalFile(file);
                  if (transformer.isTransformable(untransformed)) {
                    application.runWriteAction(
                        new Runnable() {
                          public void run() {
                            try {
                              // if untransformed != file, the file is already a (possibly
                              // transformed) copy of the original 'untransformed' file.
                              // If this is the case, just use already created copy and do not copy
                              // file content once again
                              final VirtualFile fileCopy =
                                  untransformed.equals(file)
                                      ? createFileCopy(getTempDir(module), file)
                                      : file;
                              originalToCopyFileMap.put(file, fileCopy);
                            } catch (IOException e) {
                              // skip it
                            }
                          }
                        });
                  }
                }
              }
            }
          },
          myCompileContext.getProgressIndicator().getModalityState());

      // do actual transform
      for (final Module module : modules) {
        final List<VirtualFile> filesToCompile = chunk.getFilesToCompile(module);
        for (int j = 0; j < filesToCompile.size(); j++) {
          final VirtualFile file = filesToCompile.get(j);
          final VirtualFile fileCopy = originalToCopyFileMap.get(file);
          if (fileCopy != null) {
            final boolean ok =
                transformer.transform(myCompileContext, fileCopy, chunk.getOriginalFile(file));
            if (ok) {
              chunk.substituteWithTransformedVersion(module, j, fileCopy);
            }
          }
        }
      }
    }
  }